# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2oq2A	261	2.45e-23		
2goyA	275	5.85e-23		
1surA	215	1.08e-21	c.26.2.2	31620
1sur	215	5.13e-21		
1zunA	325	8.62e-18	c.26.2.2	125676
1wy5A	317	2.19e-14	c.26.2.5,d.229.1.1	121428,121429
1ni5A	433	1.30e-13	b.153.1.2,d.229.1.1,c.26.2.5	111592,111593,80533
1xngA	268	6.02e-11	c.26.2.1	122186
1k92A	455	8.68e-11	c.26.2.1,d.210.1.1	68325,68326
2dplA	308	8.82e-11		
1wxiA	275	4.09e-10	c.26.2.1	121400
1kqpA	271	8.00e-10	c.26.2.1	72883
2hmaA	376	9.54e-10		
1vl2A	421	1.58e-09	c.26.2.1,d.210.1.1	108708,108709
1korA	400	3.08e-09	c.26.2.1,d.210.1.1	72824,72825
1ru8A	232	5.08e-09	c.26.2.1	97849
2pg3A	232	2.48e-08		
2e18A	257	2.71e-07		
1m1zA	513	4.63e-07	c.26.2.1,d.153.1.1	78457,78458
2d13A	227	1.46e-06	c.26.2.1	131121
2c5sA	413	1.53e-06	c.26.2.6,d.308.1.1	129950,129951
1ct9A	553	4.65e-05	c.26.2.1,d.153.1.1	31616,41834
1q15A	503	0.004151	c.26.2.1,d.153.1.1	95538,95539
1gpmA	525	0.006246	c.23.16.1,c.26.2.1,d.52.2.1	31405,31608,38826
2dxnA	274	1.076		
2bkxA	242	1.090		
2nxfA	322	1.502		
2q8uA	336	1.712		
1ne7A	289	1.735	c.124.1.1	91833
2blnA	305	3.247	b.46.1.1,c.65.1.1	128734,128735
1j8yF	297	3.518	a.24.13.1,c.37.1.10	62747,62748
2pfsA	150	3.818		
1tq8A	163	4.219	c.26.2.4	107204
1xm7A	195	4.353	d.159.1.8	115473
2j0eA	266	4.763		
2hy1A	280	4.818		
1ipaA	274	5.762	c.116.1.1,d.79.3.3	71254,71255
2bw0A	329	6.296	b.46.1.1,c.65.1.1	129303,129304
1eg5A	384	6.750	c.67.1.3	34429
1jmvA	141	7.082	c.26.2.4	66897
2gdjA	264	7.431	c.37.1.11	135018
1y8cA	246	7.771	c.66.1.43	116563
1vbkA	307	8.001	c.26.2.6,d.308.1.1	119957,119958
1y89A	238	8.061		
1wjgA	137	8.616	c.26.2.4	114696
1w24A	182	8.770	d.159.1.7	120579
1s3iA	310	9.120	b.46.1.1,c.65.1.1	98435,98436
1wyuA	438	9.144	c.67.1.7	121452
1fmtA	314	10.27	b.46.1.1,c.65.1.1	25758,34174
1t3iA	420	10.34	c.67.1.3	106354
1jf9A	408	10.35	c.67.1.3	62931
1eluA	390	10.74	c.67.1.3	34434
3ch7A	266	12.18		
2z08A	137	13.99		
1u32A	293	14.52	d.159.1.3	107631
1elqA	390	15.33	c.67.1.3	34436
1fs5A	266	16.10	c.124.1.1	65044
1vl1A	232	16.24	c.124.1.1	108707
1iugA	352	17.62	c.67.1.3	90699
1zwxA	301	19.13	d.151.1.3	125752
1vp8A	201	19.84	c.49.1.2	113947
1nnwA	252	20.59	d.159.1.5	80674
2o0mA	345	22.33		
2i1qA	322	22.35	a.60.4.1,c.37.1.11	136984,136985
2ac2A	309	23.52		
1z2wA	192	24.70	d.159.1.7	124390
1m32A	366	25.10	c.67.1.3	78508
2b9eA	303	26.19	c.66.1.38	128124
3cssA	267	26.26		
1jsxA	207	27.77	c.66.1.20	71846
1vmaA	306	28.17	a.24.13.1,c.37.1.10	108887,108888
1pmmA	466	28.52	c.67.1.6	94901
1ta8A	332	28.79	d.142.2.2	112375
2hejA	323	30.29		
1i60A	278	30.93	c.1.15.4	71118
2vlbA	251	33.75		
2qe6A	274	34.96		
1dozA	309	34.97	c.92.1.1	35592
1v73A	342	35.86		
2o2gA	223	36.34		
2aotA	292	36.38	c.66.1.19	127098
1zuaX	317	36.64		
1s95A	333	36.85	d.159.1.3	105375
2e5fA	325	37.73		
1fyeA	229	40.22	c.23.16.4	31477
1fjmA	330	40.67	d.159.1.3	42082
1jk7A	323	40.68	d.159.1.3	63144
2ax3A	502	41.86	c.72.1.4,c.104.1.1	127477,127478
1frb	315	43.61		
1vicA	262	43.76	c.68.1.13	100756
2a22A	215	44.41	d.159.1.7	126025
1dl5A	317	44.81	c.66.1.7,d.197.1.1	64720,64721
3b9qA	302	44.89		
2bx2L	517	45.20		
1a4mA	349	45.50	c.1.9.1	29014
2pjdA	343	45.82		
1hw6A	278	47.54	c.1.7.1	61296
2h1vA	310	48.44		
1af7A	274	48.72	a.58.1.1,c.66.1.8	17928,34203
1ads	315	49.32		
1vjoA	393	50.66	c.67.1.3	100827
1j96A	323	50.76	c.1.7.1	71616
1gggA	226	50.84	c.94.1.1	35817
2bekA	257	50.88		
1xdzA	240	52.04	c.66.1.20	115196
1uf3A	228	53.88	d.159.1.6	99317
1mi3A	322	54.07	c.1.7.1	91274
1ujqA	305	54.89	c.1.12.7	99463
1i5gA	144	54.95	c.47.1.10	61784
1vid	221	55.72		
2df8A	325	57.11		
2yvtA	260	57.33		
2a0nA	265	57.52	c.1.2.1	125961
3ciwA	348	58.58		
1bc5A	269	58.75	a.58.1.1,c.66.1.8	17929,34204
1luaA	287	59.17	c.2.1.7,c.58.1.4	78216,78217
2nxcA	254	59.82	c.66.1.39	138739
2a3nA	355	60.55		
1h5yA	253	61.14	c.1.2.1	65638
3b6nA	187	61.15		
1uwcA	261	61.22	c.69.1.17	100101
2dgkA	452	61.46		
1jeoA	180	62.06	c.80.1.3	66611
2pyyA	228	63.04		
2eg6A	347	64.40		
2okgA	255	66.23		
2hrcA	359	67.45	c.92.1.1	136687
1w8gA	234	67.73		
1cb0A	283	67.92	c.56.2.1	33790
2qvcA	313	69.80		
1xtpA	254	70.73	c.66.1.42	116031
1ek4A	418	71.36	c.95.1.1,c.95.1.1	59436,59437
1ecpA	238	71.73	c.56.2.1	33775
1qtwA	285	73.70	c.1.15.1	29392
1npyA	271	74.81	c.2.1.7,c.58.1.5	85995,85996
2hk0A	309	77.41		
1zu4A	320	77.77		
1jztA	246	78.28	c.104.1.1	63319
2hlsA	243	78.81		
1wdnA	226	80.96	c.94.1.1	35816
2qy9A	309	82.18		
2bkwA	385	82.27	c.67.1.3	128714
2dumA	170	83.37		
2ac7A	235	83.85	c.56.2.1	126543
2rjbA	455	83.96		
1zczA	464	83.97	c.24.1.3,c.97.1.4	124923,124924
1b9hA	388	84.05	c.67.1.4	34488
1z5nA	242	87.11		
2v3aA	384	87.44		
1o54A	277	87.65	c.66.1.13	92482
1zgdA	312	87.79		
2qulA	290	88.93		
1tfr	305	89.14