# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.70e-23 2goyA 275 1.02e-22 1surA 215 1.44e-21 c.26.2.2 31620 1sur 215 7.88e-21 1zunA 325 8.33e-18 c.26.2.2 125676 1wy5A 317 4.96e-14 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.48e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 8.86e-11 c.26.2.1 122186 1k92A 455 9.94e-11 c.26.2.1,d.210.1.1 68325,68326 2dplA 308 1.18e-10 1wxiA 275 4.06e-10 c.26.2.1 121400 1kqpA 271 7.98e-10 c.26.2.1 72883 1vl2A 421 1.29e-09 c.26.2.1,d.210.1.1 108708,108709 1korA 400 1.48e-09 c.26.2.1,d.210.1.1 72824,72825 2hmaA 376 1.97e-09 1ru8A 232 7.77e-09 c.26.2.1 97849 2pg3A 232 2.67e-08 2e18A 257 3.03e-07 1m1zA 513 4.25e-07 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 8.73e-07 c.26.2.1 131121 2c5sA 413 1.86e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 4.26e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.002823 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.005384 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.8954 1ne7A 289 1.292 c.124.1.1 91833 2dxnA 274 1.451 2q8uA 336 1.738 2nxfA 322 2.194 1ipaA 274 2.527 c.116.1.1,d.79.3.3 71254,71255 2blnA 305 2.873 b.46.1.1,c.65.1.1 128734,128735 2pfsA 150 3.034 1tq8A 163 3.304 c.26.2.4 107204 2hy1A 280 4.400 2j0eA 266 4.826 1y89A 238 5.290 2bw0A 329 5.405 b.46.1.1,c.65.1.1 129303,129304 1jmvA 141 5.500 c.26.2.4 66897 1xm7A 195 5.690 d.159.1.8 115473 1j8yF 297 6.052 a.24.13.1,c.37.1.10 62747,62748 1t3iA 420 7.167 c.67.1.3 106354 3ch7A 266 7.349 1wjgA 137 7.797 c.26.2.4 114696 1vbkA 307 8.409 c.26.2.6,d.308.1.1 119957,119958 1eg5A 384 9.091 c.67.1.3 34429 2gdjA 264 9.202 c.37.1.11 135018 1wyuA 438 9.912 c.67.1.7 121452 1jf9A 408 9.95 c.67.1.3 62931 1fmtA 314 10.02 b.46.1.1,c.65.1.1 25758,34174 1s3iA 310 10.31 b.46.1.1,c.65.1.1 98435,98436 1iugA 352 10.54 c.67.1.3 90699 1zwxA 301 12.18 d.151.1.3 125752 2z08A 137 12.24 1fs5A 266 12.25 c.124.1.1 65044 2o0mA 345 12.41 1eluA 390 13.68 c.67.1.3 34434 1u32A 293 15.99 d.159.1.3 107631 1elqA 390 16.04 c.67.1.3 34436 1w24A 182 16.19 d.159.1.7 120579 2i1qA 322 17.05 a.60.4.1,c.37.1.11 136984,136985 1vl1A 232 17.32 c.124.1.1 108707 1y8cA 246 17.66 c.66.1.43 116563 1v73A 342 21.92 1vp8A 201 22.45 c.49.1.2 113947 3cssA 267 23.13 2a22A 215 24.75 d.159.1.7 126025 1z2wA 192 24.85 d.159.1.7 124390 2hejA 323 25.68 1j96A 323 26.17 c.1.7.1 71616 2b9eA 303 27.25 c.66.1.38 128124 1jsxA 207 27.54 c.66.1.20 71846 1pmmA 466 28.06 c.67.1.6 94901 2vlbA 251 29.45 1m32A 366 30.48 c.67.1.3 78508 1fjmA 330 30.53 d.159.1.3 42082 1uwcA 261 31.87 c.69.1.17 100101 1s95A 333 32.09 d.159.1.3 105375 1a4mA 349 32.85 c.1.9.1 29014 2ac2A 309 33.43 2qe6A 274 34.68 1vmaA 306 35.99 a.24.13.1,c.37.1.10 108887,108888 2e5fA 325 36.08 2o2gA 223 36.20 3b6nA 187 36.20 1i5gA 144 36.22 c.47.1.10 61784 1fyeA 229 37.01 c.23.16.4 31477 1ta8A 332 38.96 d.142.2.2 112375 1frb 315 39.30 1ujqA 305 40.98 c.1.12.7 99463 1dozA 309 41.05 c.92.1.1 35592 1jk7A 323 42.08 d.159.1.3 63144 2okgA 255 43.13 1zuaX 317 43.55 1i60A 278 44.83 c.1.15.4 71118 1jeoA 180 45.12 c.80.1.3 66611 1ads 315 46.62 1vicA 262 47.43 c.68.1.13 100756 2ax3A 502 47.65 c.72.1.4,c.104.1.1 127477,127478 2h1vA 310 48.28 3ciwA 348 48.76 2ri0A 234 48.82 1ecpA 238 50.83 c.56.2.1 33775 2bx2L 517 51.15 2bekA 257 52.63 1luaA 287 58.06 c.2.1.7,c.58.1.4 78216,78217 1hw6A 278 58.42 c.1.7.1 61296 2gwgA 350 59.07 c.1.9.15 135805 2pjdA 343 60.40 2df8A 325 60.87 2z9wA 392 60.93 1w8gA 234 61.17 2aotA 292 61.28 c.66.1.19 127098 1us0A 316 61.79 c.1.7.1 99850 1nnwA 252 62.37 d.159.1.5 80674 1cr1A 296 62.81 c.37.1.11 32286 2pgfA 371 64.62 2hrcA 359 64.94 c.92.1.1 136687 2eg6A 347 66.24 2ac7A 235 66.82 c.56.2.1 126543 1gggA 226 67.59 c.94.1.1 35817 1vjoA 393 67.63 c.67.1.3 100827 2bkwA 385 67.77 c.67.1.3 128714 2hlsA 243 67.79 2eq5A 228 67.87 2dgkA 452 68.18 2e2oA 299 69.60 1dl5A 317 70.01 c.66.1.7,d.197.1.1 64720,64721 2ggtA 164 70.36 c.47.1.10 135156 1zjjA 263 74.14 1vid 221 75.19 2uzhA 165 76.70 1af7A 274 79.49 a.58.1.1,c.66.1.8 17928,34203 1z5nA 242 80.90 1dvjA 246 81.71 c.1.2.3 28546 2dr3A 247 82.23 2pyyA 228 82.25 2qv5A 261 82.52 1uteA 313 82.92 d.159.1.1 42078 1xtpA 254 83.11 c.66.1.42 116031 2a3nA 355 84.49 1mi3A 322 85.31 c.1.7.1 91274 1h5yA 253 85.79 c.1.2.1 65638 1uf3A 228 87.09 d.159.1.6 99317 1ivnA 190 88.07 c.23.10.5 83719 1a76A 326 88.40 a.60.7.1,c.120.1.2 18091,33361 1pbtA 244 88.48 c.124.1.1 94416 2q09A 416 89.60