# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 4.95e-24 2goyA 275 1.40e-23 1surA 215 1.42e-22 c.26.2.2 31620 1sur 215 6.37e-22 1zunA 325 4.34e-18 c.26.2.2 125676 1wy5A 317 1.20e-14 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.82e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 3.28e-11 c.26.2.1 122186 2dplA 308 3.86e-11 1k92A 455 1.03e-10 c.26.2.1,d.210.1.1 68325,68326 1kqpA 271 1.15e-10 c.26.2.1 72883 1wxiA 275 1.83e-10 c.26.2.1 121400 2hmaA 376 1.48e-09 1vl2A 421 3.43e-09 c.26.2.1,d.210.1.1 108708,108709 1korA 400 3.63e-09 c.26.2.1,d.210.1.1 72824,72825 1ru8A 232 4.84e-09 c.26.2.1 97849 2pg3A 232 4.75e-08 2e18A 257 2.43e-07 2d13A 227 1.40e-06 c.26.2.1 131121 2c5sA 413 5.13e-06 c.26.2.6,d.308.1.1 129950,129951 1m1zA 513 5.22e-06 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 3.66e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.002394 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.002568 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.5922 1ne7A 289 1.058 c.124.1.1 91833 1tq8A 163 1.566 c.26.2.4 107204 2dxnA 274 2.119 2hy1A 280 2.536 2pfsA 150 2.582 1y8cA 246 2.870 c.66.1.43 116563 2blnA 305 3.819 b.46.1.1,c.65.1.1 128734,128735 1vbkA 307 4.010 c.26.2.6,d.308.1.1 119957,119958 1ipaA 274 4.109 c.116.1.1,d.79.3.3 71254,71255 2q8uA 336 4.248 1wyuA 438 4.718 c.67.1.7 121452 1jf9A 408 5.530 c.67.1.3 62931 2gdjA 264 6.556 c.37.1.11 135018 1t3iA 420 6.559 c.67.1.3 106354 2nxfA 322 7.114 1vl1A 232 7.452 c.124.1.1 108707 1y89A 238 7.737 1j8yF 297 7.761 a.24.13.1,c.37.1.10 62747,62748 1wjgA 137 8.953 c.26.2.4 114696 2z08A 137 9.201 1eg5A 384 9.236 c.67.1.3 34429 1fs5A 266 11.33 c.124.1.1 65044 1eluA 390 11.88 c.67.1.3 34434 2j0eA 266 12.23 1s3iA 310 12.76 b.46.1.1,c.65.1.1 98435,98436 2o0mA 345 13.47 1iugA 352 13.85 c.67.1.3 90699 1elqA 390 13.89 c.67.1.3 34436 1ta8A 332 14.24 d.142.2.2 112375 2vlbA 251 14.24 1jmvA 141 16.24 c.26.2.4 66897 1fmtA 314 16.26 b.46.1.1,c.65.1.1 25758,34174 1uf3A 228 16.46 d.159.1.6 99317 1zwxA 301 17.52 d.151.1.3 125752 2ri0A 234 17.65 1xm7A 195 18.18 d.159.1.8 115473 3ch7A 266 19.13 1pbtA 244 20.90 c.124.1.1 94416 2bw0A 329 22.25 b.46.1.1,c.65.1.1 129303,129304 3caiA 406 23.74 2gwgA 350 24.48 c.1.9.15 135805 2hejA 323 24.96 1v73A 342 26.34 3ciwA 348 27.70 1i60A 278 28.02 c.1.15.4 71118 1m32A 366 28.33 c.67.1.3 78508 2i1qA 322 30.71 a.60.4.1,c.37.1.11 136984,136985 1vp8A 201 31.06 c.49.1.2 113947 2ac2A 309 31.17 1wvfA 520 31.69 d.58.32.1,d.145.1.1 121337,121338 1vr6A 350 31.88 c.1.10.4 120439 1ujqA 305 34.05 c.1.12.7 99463 1vjoA 393 35.08 c.67.1.3 100827 1u32A 293 35.42 d.159.1.3 107631 1j96A 323 38.31 c.1.7.1 71616 2h1vA 310 39.58 1zuaX 317 40.31 3b6nA 187 41.16 1dozA 309 42.24 c.92.1.1 35592 1fyeA 229 42.37 c.23.16.4 31477 1us0A 316 42.66 c.1.7.1 99850 1ivnA 190 44.21 c.23.10.5 83719 1frb 315 45.25 3cssA 267 45.99 1s95A 333 46.12 d.159.1.3 105375 2qhsA 237 47.57 1nnwA 252 48.41 d.159.1.5 80674 2pjdA 343 50.74 1hw6A 278 50.85 c.1.7.1 61296 1ads 315 50.90 1w24A 182 55.96 d.159.1.7 120579 1vmaA 306 56.39 a.24.13.1,c.37.1.10 108887,108888 1luaA 287 57.45 c.2.1.7,c.58.1.4 78216,78217 1a76A 326 58.88 a.60.7.1,c.120.1.2 18091,33361 2nxcA 254 59.40 c.66.1.39 138739 1k77A 260 59.60 c.1.15.5 72096 2hk0A 309 61.28 2ac7A 235 61.79 c.56.2.1 126543 1fjmA 330 61.95 d.159.1.3 42082 1j32A 388 62.09 c.67.1.1 77067 1gz0A 253 63.87 c.116.1.1,d.79.3.3 76391,76392 2a3nA 355 64.08 1c7gA 456 64.55 c.67.1.2 90415 2h3hA 313 65.55 1xxlA 239 66.21 c.66.1.41 116203 1vicA 262 66.46 c.68.1.13 100756 2okgA 255 66.56 1ne9A 335 66.94 d.108.1.4,d.108.1.4 91839,91840 1jsxA 207 66.94 c.66.1.20 71846 1a4mA 349 69.03 c.1.9.1 29014 2aotA 292 69.15 c.66.1.19 127098 1qzzA 374 71.23 a.4.5.29,c.66.1.12 96719,96720 2yvtA 260 71.42 2h1rA 299 72.35 1w8gA 234 73.37 2gwdA 449 73.40 1jk7A 323 74.17 d.159.1.3 63144 3xis 387 74.31 1uwcA 261 74.89 c.69.1.17 100101 1ecpA 238 75.91 c.56.2.1 33775 2qe6A 274 76.27 1xdzA 240 76.58 c.66.1.20 115196 2uzhA 165 76.61 2o2gA 223 77.90 2a22A 215 80.85 d.159.1.7 126025 1jflA 228 81.45 c.78.2.1,c.78.2.1 71656,71657 1b8oA 284 81.48 c.56.2.1 33762 1gudA 288 84.37 c.93.1.1 83326 1gggA 226 84.56 c.94.1.1 35817 2dr3A 247 84.65 2b9eA 303 84.73 c.66.1.38 128124 1q6oA 216 84.82 c.1.2.3 95986 2qvcA 313 85.65 1qnf 484 86.73 2bx2L 517 87.01 1pmmA 466 88.85 c.67.1.6 94901 2e7jA 371 89.96