# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 7.36e-25 2goyA 275 1.79e-24 1surA 215 3.79e-23 c.26.2.2 31620 1sur 215 1.35e-22 1zunA 325 5.60e-19 c.26.2.2 125676 1wy5A 317 3.41e-15 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 4.08e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 9.12e-12 c.26.2.1 122186 2dplA 308 2.37e-11 1wxiA 275 3.22e-11 c.26.2.1 121400 1k92A 455 4.89e-11 c.26.2.1,d.210.1.1 68325,68326 1kqpA 271 6.00e-11 c.26.2.1 72883 2hmaA 376 6.99e-10 1vl2A 421 7.91e-10 c.26.2.1,d.210.1.1 108708,108709 1korA 400 1.68e-09 c.26.2.1,d.210.1.1 72824,72825 1ru8A 232 3.64e-09 c.26.2.1 97849 2pg3A 232 2.49e-08 2e18A 257 1.98e-07 1m1zA 513 4.37e-07 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 6.68e-07 c.26.2.1 131121 2c5sA 413 1.47e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 1.63e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.001026 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.004553 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.2744 2q8uA 336 0.5878 1ne7A 289 0.6652 c.124.1.1 91833 2dxnA 274 1.017 1ipaA 274 2.157 c.116.1.1,d.79.3.3 71254,71255 2hy1A 280 2.303 2j0eA 266 3.047 1tq8A 163 3.184 c.26.2.4 107204 1y89A 238 3.249 1fs5A 266 3.357 c.124.1.1 65044 2blnA 305 3.621 b.46.1.1,c.65.1.1 128734,128735 1j8yF 297 3.842 a.24.13.1,c.37.1.10 62747,62748 1xm7A 195 4.015 d.159.1.8 115473 2nxfA 322 4.117 3ch7A 266 5.903 2pfsA 150 6.603 1wjgA 137 6.837 c.26.2.4 114696 2gdjA 264 7.013 c.37.1.11 135018 1vbkA 307 8.769 c.26.2.6,d.308.1.1 119957,119958 1zwxA 301 9.541 d.151.1.3 125752 1jmvA 141 9.688 c.26.2.4 66897 1y8cA 246 10.11 c.66.1.43 116563 1w24A 182 11.06 d.159.1.7 120579 1eg5A 384 11.13 c.67.1.3 34429 1eluA 390 12.99 c.67.1.3 34434 3cssA 267 13.11 1vl1A 232 14.11 c.124.1.1 108707 2vlbA 251 15.14 1i60A 278 15.64 c.1.15.4 71118 1elqA 390 16.47 c.67.1.3 34436 2bw0A 329 17.34 b.46.1.1,c.65.1.1 129303,129304 1pmmA 466 17.63 c.67.1.6 94901 2z08A 137 17.92 1ta8A 332 19.85 d.142.2.2 112375 2ac2A 309 20.48 1vmaA 306 21.21 a.24.13.1,c.37.1.10 108887,108888 1s3iA 310 21.32 b.46.1.1,c.65.1.1 98435,98436 1t3iA 420 21.43 c.67.1.3 106354 1fmtA 314 22.31 b.46.1.1,c.65.1.1 25758,34174 2i1qA 322 25.79 a.60.4.1,c.37.1.11 136984,136985 1nnwA 252 26.23 d.159.1.5 80674 1z2wA 192 26.96 d.159.1.7 124390 1jsxA 207 28.59 c.66.1.20 71846 1k0mA 241 29.24 a.45.1.1,c.47.1.5 67949,67950 2pjdA 343 30.83 1uwcA 261 31.30 c.69.1.17 100101 1gggA 226 32.17 c.94.1.1 35817 1jf9A 408 32.17 c.67.1.3 62931 1wdnA 226 32.48 c.94.1.1 35816 1pbtA 244 32.73 c.124.1.1 94416 1wyuA 438 33.04 c.67.1.7 121452 1j96A 323 33.14 c.1.7.1 71616 1vp8A 201 33.48 c.49.1.2 113947 2hejA 323 33.50 1u32A 293 34.06 d.159.1.3 107631 1muwA 386 34.62 c.1.15.3 79495 1qtwA 285 36.38 c.1.15.1 29392 1dozA 309 37.20 c.92.1.1 35592 2cksA 306 37.66 4xis 387 39.72 2jh3A 474 40.32 1us0A 316 40.68 c.1.7.1 99850 1frb 315 40.98 1nsjA 205 41.39 c.1.2.4 28560 1iuqA 367 41.60 c.112.1.1 90703 2o0mA 345 41.85 1hw6A 278 42.94 c.1.7.1 61296 2ac7A 235 43.02 c.56.2.1 126543 1jflA 228 45.47 c.78.2.1,c.78.2.1 71656,71657 1uf3A 228 45.67 d.159.1.6 99317 3b9qA 302 46.26 2h1vA 310 46.28 1ivnA 190 47.06 c.23.10.5 83719 2dumA 170 47.06 2eg6A 347 47.48 2bekA 257 47.61 2yvtA 260 48.78 2dgkA 452 49.61 1ads 315 50.31 1a76A 326 50.58 a.60.7.1,c.120.1.2 18091,33361 1w8gA 234 50.59 3xis 387 50.61 2p1zA 180 51.08 3b6nA 187 52.33 1dl5A 317 52.41 c.66.1.7,d.197.1.1 64720,64721 1k77A 260 52.68 c.1.15.5 72096 2a22A 215 52.85 d.159.1.7 126025 1a4mA 349 53.79 c.1.9.1 29014 2hrcA 359 55.38 c.92.1.1 136687 1luaA 287 55.48 c.2.1.7,c.58.1.4 78216,78217 1i5gA 144 55.87 c.47.1.10 61784 1ek4A 418 56.01 c.95.1.1,c.95.1.1 59436,59437 2aheA 267 56.48 2dnjA 260 57.01 d.151.1.1 41790 1h1yA 228 58.10 c.1.2.2 76506 1vicA 262 58.90 c.68.1.13 100756 2o2gA 223 59.41 1mjhA 162 60.20 c.26.2.4 31639 2bx2L 517 62.30 2gwdA 449 64.31 1vl5A 260 64.81 c.66.1.41 108720 2pyyA 228 65.07 1v5xA 203 65.18 c.1.2.4 100377 2qe6A 274 65.64 1s95A 333 66.43 d.159.1.3 105375 1xdzA 240 66.63 c.66.1.20 115196 1wvfA 520 66.71 d.58.32.1,d.145.1.1 121337,121338 2b9eA 303 67.01 c.66.1.38 128124 2gsqA 202 67.43 a.45.1.1,c.47.1.5 17715,33009 2e5fA 325 67.57 1b9hA 388 68.57 c.67.1.4 34488 2h1rA 299 70.93 1q6oA 216 71.10 c.1.2.3 95986 1zuaX 317 71.39 1kngA 156 73.14 c.47.1.10 72777 2nwrA 267 73.45 1tu7A 208 73.52 a.45.1.1,c.47.1.5 112653,112654 1hd7A 318 73.91 d.151.1.1 41780 1gewA 356 74.25 c.67.1.1 60470 1cb0A 283 74.85 c.56.2.1 33790 2uzhA 165 75.21 1jvnA 555 75.76 c.1.2.1,c.23.16.1 67355,67356 2ordA 397 75.86 3cbuA 214 75.87 1dvjA 246 77.10 c.1.2.3 28546 2ah5A 210 77.26 c.108.1.6 126742 2qhsA 237 77.67 1cr1A 296 78.82 c.37.1.11 32286 1v0wA 506 78.95 d.136.1.2,d.136.1.2 108220,108221 1ujqA 305 79.05 c.1.12.7 99463 2qy9A 309 80.27 2eq5A 228 80.84 2qulA 290 81.71 2hlsA 243 83.00 1fyeA 229 83.32 c.23.16.4 31477 1ecpA 238 83.37 c.56.2.1 33775 1qzzA 374 84.68 a.4.5.29,c.66.1.12 96719,96720 1z5nA 242 86.69 2dri 271 87.38 1t8hA 277 87.59 d.194.1.2 106664 2hk0A 309 87.66 1vhwA 253 87.75 c.56.2.1 100706 1zczA 464 87.84 c.24.1.3,c.97.1.4 124923,124924 1h2eA 207 88.45 c.60.1.1 70857 1jeoA 180 89.94 c.80.1.3 66611