# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 1.22e-23 2goyA 275 3.95e-23 1surA 215 6.53e-22 c.26.2.2 31620 1sur 215 2.19e-21 1zunA 325 5.12e-18 c.26.2.2 125676 1wy5A 317 1.31e-14 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.69e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 3.02e-11 c.26.2.1 122186 2dplA 308 7.54e-11 1k92A 455 8.71e-11 c.26.2.1,d.210.1.1 68325,68326 1wxiA 275 8.74e-11 c.26.2.1 121400 1kqpA 271 1.88e-10 c.26.2.1 72883 1vl2A 421 1.45e-09 c.26.2.1,d.210.1.1 108708,108709 2hmaA 376 2.16e-09 1korA 400 2.96e-09 c.26.2.1,d.210.1.1 72824,72825 1ru8A 232 1.09e-08 c.26.2.1 97849 2pg3A 232 4.88e-08 2e18A 257 3.57e-07 1m1zA 513 4.80e-07 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 1.09e-06 c.26.2.1 131121 2c5sA 413 2.66e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 3.37e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.001600 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.006566 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.4180 1ne7A 289 0.9453 c.124.1.1 91833 2q8uA 336 1.126 2dxnA 274 1.429 1ipaA 274 2.246 c.116.1.1,d.79.3.3 71254,71255 2hy1A 280 2.529 1y89A 238 2.677 2blnA 305 3.077 b.46.1.1,c.65.1.1 128734,128735 2j0eA 266 3.104 1tq8A 163 3.161 c.26.2.4 107204 1j8yF 297 3.593 a.24.13.1,c.37.1.10 62747,62748 1fs5A 266 4.096 c.124.1.1 65044 2nxfA 322 4.242 3ch7A 266 5.751 2pfsA 150 6.849 1wjgA 137 6.874 c.26.2.4 114696 1xm7A 195 7.358 d.159.1.8 115473 1eg5A 384 9.638 c.67.1.3 34429 1jmvA 141 10.19 c.26.2.4 66897 1zwxA 301 10.31 d.151.1.3 125752 2gdjA 264 11.01 c.37.1.11 135018 1vmaA 306 11.48 a.24.13.1,c.37.1.10 108887,108888 1vbkA 307 11.52 c.26.2.6,d.308.1.1 119957,119958 1w24A 182 12.35 d.159.1.7 120579 1y8cA 246 12.38 c.66.1.43 116563 2bw0A 329 12.48 b.46.1.1,c.65.1.1 129303,129304 3cssA 267 13.16 1vl1A 232 14.31 c.124.1.1 108707 2vlbA 251 14.65 1pmmA 466 14.71 c.67.1.6 94901 1eluA 390 15.30 c.67.1.3 34434 2z08A 137 15.36 1s3iA 310 19.08 b.46.1.1,c.65.1.1 98435,98436 1ta8A 332 19.24 d.142.2.2 112375 1i60A 278 19.60 c.1.15.4 71118 1fmtA 314 21.02 b.46.1.1,c.65.1.1 25758,34174 1t3iA 420 22.15 c.67.1.3 106354 1elqA 390 22.81 c.67.1.3 34436 2ac2A 309 24.09 1nnwA 252 26.58 d.159.1.5 80674 1wyuA 438 26.62 c.67.1.7 121452 1jf9A 408 26.91 c.67.1.3 62931 1pbtA 244 28.64 c.124.1.1 94416 2i1qA 322 29.87 a.60.4.1,c.37.1.11 136984,136985 1jsxA 207 31.45 c.66.1.20 71846 1a76A 326 31.53 a.60.7.1,c.120.1.2 18091,33361 1z2wA 192 31.68 d.159.1.7 124390 1uwcA 261 32.00 c.69.1.17 100101 2dgkA 452 34.71 1muwA 386 36.82 c.1.15.3 79495 2pjdA 343 37.38 1nsjA 205 37.40 c.1.2.4 28560 4xis 387 37.75 1vp8A 201 38.06 c.49.1.2 113947 1iuqA 367 39.20 c.112.1.1 90703 1gggA 226 40.29 c.94.1.1 35817 2jh3A 474 40.58 1ek4A 418 42.22 c.95.1.1,c.95.1.1 59436,59437 2o0mA 345 42.38 1a4mA 349 43.77 c.1.9.1 29014 2o2gA 223 43.93 1wvfA 520 44.39 d.58.32.1,d.145.1.1 121337,121338 2b9eA 303 44.63 c.66.1.38 128124 1dl5A 317 44.65 c.66.1.7,d.197.1.1 64720,64721 3b9qA 302 45.51 2cksA 306 45.82 1dozA 309 46.12 c.92.1.1 35592 2p1zA 180 47.19 1qtwA 285 47.96 c.1.15.1 29392 1wdnA 226 48.06 c.94.1.1 35816 1k77A 260 48.21 c.1.15.5 72096 2bekA 257 48.75 2hrcA 359 48.91 c.92.1.1 136687 2hejA 323 49.52 2qhsA 237 49.78 2bx2L 517 50.08 1u32A 293 50.34 d.159.1.3 107631 2eg6A 347 50.47 3b6nA 187 51.42 2a22A 215 52.40 d.159.1.7 126025 1vicA 262 52.80 c.68.1.13 100756 1j96A 323 52.92 c.1.7.1 71616 2dumA 170 53.01 1us0A 316 53.01 c.1.7.1 99850 2h1vA 310 55.61 1jflA 228 56.61 c.78.2.1,c.78.2.1 71656,71657 1frb 315 59.36 1luaA 287 59.43 c.2.1.7,c.58.1.4 78216,78217 1i5gA 144 59.75 c.47.1.10 61784 1hw6A 278 59.99 c.1.7.1 61296 2e5fA 325 61.43 2ac7A 235 61.59 c.56.2.1 126543 1ads 315 62.34 3xis 387 62.41 2pyyA 228 62.42 1b9hA 388 63.00 c.67.1.4 34488 2ordA 397 64.67 1v0wA 506 64.74 d.136.1.2,d.136.1.2 108220,108221 2yvtA 260 64.92 1v5xA 203 66.59 c.1.2.4 100377 1d7uA 433 67.11 c.67.1.4 34439 2ah5A 210 67.86 c.108.1.6 126742 1tqyB 415 68.09 c.95.1.1,c.95.1.1 107247,107248 1h1yA 228 68.65 c.1.2.2 76506 1gewA 356 69.44 c.67.1.1 60470 1k0mA 241 69.48 a.45.1.1,c.47.1.5 67949,67950 1uf3A 228 69.54 d.159.1.6 99317 1h2eA 207 70.37 c.60.1.1 70857 2qe6A 274 71.25 1xdzA 240 71.90 c.66.1.20 115196 1jeoA 180 72.28 c.80.1.3 66611 2e2oA 299 74.13 1ujqA 305 75.37 c.1.12.7 99463 2gekA 406 76.00 1ivnA 190 76.91 c.23.10.5 83719 1cb0A 283 77.22 c.56.2.1 33790 2dri 271 79.08 2dnjA 260 79.23 d.151.1.1 41790 2eq5A 228 80.02 1zuaX 317 80.41 1af7A 274 80.52 a.58.1.1,c.66.1.8 17928,34203 2qvcA 313 81.14 1w8gA 234 82.15 2uzhA 165 84.71 2hk0A 309 85.17 2rjbA 455 85.94 2qv5A 261 86.32 2df8A 325 88.81 1ga8A 311 89.57 c.68.1.4 34516 1iugA 352 89.79 c.67.1.3 90699