# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.25e-24 2goyA 275 5.81e-24 1surA 215 1.47e-22 c.26.2.2 31620 1sur 215 5.41e-22 1zunA 325 1.18e-18 c.26.2.2 125676 1wy5A 317 6.59e-15 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 6.60e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 1.54e-11 c.26.2.1 122186 2dplA 308 3.65e-11 1wxiA 275 4.35e-11 c.26.2.1 121400 1k92A 455 5.80e-11 c.26.2.1,d.210.1.1 68325,68326 1kqpA 271 6.58e-11 c.26.2.1 72883 1vl2A 421 1.15e-09 c.26.2.1,d.210.1.1 108708,108709 2hmaA 376 1.19e-09 1korA 400 1.63e-09 c.26.2.1,d.210.1.1 72824,72825 1ru8A 232 7.63e-09 c.26.2.1 97849 2pg3A 232 2.96e-08 2e18A 257 2.43e-07 1m1zA 513 2.65e-07 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 7.11e-07 c.26.2.1 131121 2c5sA 413 1.48e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 2.00e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.001113 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.003413 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.2671 2q8uA 336 0.7723 1ne7A 289 0.8705 c.124.1.1 91833 2dxnA 274 0.8982 2hy1A 280 1.477 1ipaA 274 2.344 c.116.1.1,d.79.3.3 71254,71255 2blnA 305 2.420 b.46.1.1,c.65.1.1 128734,128735 1y89A 238 2.716 2j0eA 266 2.725 2nxfA 322 2.741 1tq8A 163 3.002 c.26.2.4 107204 1fs5A 266 3.926 c.124.1.1 65044 1j8yF 297 4.342 a.24.13.1,c.37.1.10 62747,62748 2pfsA 150 5.639 3ch7A 266 5.679 1xm7A 195 6.098 d.159.1.8 115473 1wjgA 137 8.174 c.26.2.4 114696 1jmvA 141 8.584 c.26.2.4 66897 1vbkA 307 8.957 c.26.2.6,d.308.1.1 119957,119958 1w24A 182 11.15 d.159.1.7 120579 1zwxA 301 11.21 d.151.1.3 125752 1eluA 390 11.45 c.67.1.3 34434 3cssA 267 11.96 1eg5A 384 12.02 c.67.1.3 34429 1vl1A 232 13.07 c.124.1.1 108707 1y8cA 246 13.41 c.66.1.43 116563 2gdjA 264 13.76 c.37.1.11 135018 2bw0A 329 14.14 b.46.1.1,c.65.1.1 129303,129304 1i60A 278 16.39 c.1.15.4 71118 1vmaA 306 16.39 a.24.13.1,c.37.1.10 108887,108888 1fmtA 314 17.37 b.46.1.1,c.65.1.1 25758,34174 2z08A 137 18.19 2vlbA 251 18.58 1pbtA 244 18.99 c.124.1.1 94416 1elqA 390 19.11 c.67.1.3 34436 1nnwA 252 19.90 d.159.1.5 80674 1pmmA 466 20.10 c.67.1.6 94901 2ac2A 309 21.12 1s3iA 310 22.52 b.46.1.1,c.65.1.1 98435,98436 1ta8A 332 23.30 d.142.2.2 112375 1t3iA 420 24.38 c.67.1.3 106354 1wyuA 438 28.41 c.67.1.7 121452 1ek4A 418 29.66 c.95.1.1,c.95.1.1 59436,59437 1a4mA 349 29.81 c.1.9.1 29014 1uwcA 261 30.46 c.69.1.17 100101 1z2wA 192 31.26 d.159.1.7 124390 2jh3A 474 31.89 1dozA 309 32.45 c.92.1.1 35592 1vp8A 201 32.87 c.49.1.2 113947 2pjdA 343 33.00 1a76A 326 33.34 a.60.7.1,c.120.1.2 18091,33361 1jsxA 207 33.42 c.66.1.20 71846 1u32A 293 33.61 d.159.1.3 107631 1muwA 386 35.59 c.1.15.3 79495 2o0mA 345 36.06 3b9qA 302 38.60 1vicA 262 40.15 c.68.1.13 100756 1hw6A 278 40.31 c.1.7.1 61296 1jflA 228 41.56 c.78.2.1,c.78.2.1 71656,71657 4xis 387 41.79 1jf9A 408 41.87 c.67.1.3 62931 2h1vA 310 42.23 1gggA 226 42.75 c.94.1.1 35817 1j96A 323 44.03 c.1.7.1 71616 1dl5A 317 44.93 c.66.1.7,d.197.1.1 64720,64721 2i1qA 322 45.17 a.60.4.1,c.37.1.11 136984,136985 2hejA 323 45.66 1nsjA 205 46.66 c.1.2.4 28560 2cksA 306 47.09 2qe6A 274 47.23 2dumA 170 47.47 2p1zA 180 48.39 1uf3A 228 48.85 d.159.1.6 99317 1k77A 260 49.36 c.1.15.5 72096 2bekA 257 50.29 1iuqA 367 50.50 c.112.1.1 90703 2eg6A 347 50.91 1wdnA 226 51.28 c.94.1.1 35816 2o2gA 223 51.40 2hrcA 359 52.14 c.92.1.1 136687 2dgkA 452 52.16 1w8gA 234 53.08 2qhsA 237 53.82 1i5gA 144 54.14 c.47.1.10 61784 2yvtA 260 54.15 2qvcA 313 54.37 3b6nA 187 54.64 1ivnA 190 55.45 c.23.10.5 83719 1v0wA 506 56.04 d.136.1.2,d.136.1.2 108220,108221 2b9eA 303 57.08 c.66.1.38 128124 1qtwA 285 58.13 c.1.15.1 29392 2pyyA 228 58.27 1luaA 287 59.77 c.2.1.7,c.58.1.4 78216,78217 1af7A 274 59.93 a.58.1.1,c.66.1.8 17928,34203 2a22A 215 60.70 d.159.1.7 126025 3xis 387 60.83 1ujqA 305 62.10 c.1.12.7 99463 1us0A 316 64.75 c.1.7.1 99850 1ads 315 64.90 1wvfA 520 65.65 d.58.32.1,d.145.1.1 121337,121338 2e5fA 325 65.68 1frb 315 65.71 1b9hA 388 66.26 c.67.1.4 34488 1k0mA 241 66.96 a.45.1.1,c.47.1.5 67949,67950 2eq5A 228 66.99 2dri 271 68.10 2qy9A 309 68.69 2ah5A 210 69.46 c.108.1.6 126742 1h1yA 228 69.61 c.1.2.2 76506 2gekA 406 70.48 1fyeA 229 70.95 c.23.16.4 31477 1h2eA 207 71.44 c.60.1.1 70857 1d7uA 433 72.25 c.67.1.4 34439 2bx2L 517 73.01 2e2oA 299 73.35 1tqyB 415 73.61 c.95.1.1,c.95.1.1 107247,107248 1s95A 333 75.52 d.159.1.3 105375 1jvnA 555 77.69 c.1.2.1,c.23.16.1 67355,67356 1xdzA 240 78.03 c.66.1.20 115196 1cb0A 283 79.30 c.56.2.1 33790 2hlsA 243 79.50 2dnjA 260 80.27 d.151.1.1 41790 1v5xA 203 80.65 c.1.2.4 100377 2ac7A 235 80.77 c.56.2.1 126543 1vl5A 260 81.26 c.66.1.41 108720 1mjhA 162 81.49 c.26.2.4 31639 2qulA 290 82.04 1zuaX 317 82.14 1fjmA 330 83.20 d.159.1.3 42082 1kngA 156 83.24 c.47.1.10 72777 1dvjA 246 83.63 c.1.2.3 28546 1qzzA 374 83.66 a.4.5.29,c.66.1.12 96719,96720 2db3A 434 84.54 2gwgA 350 84.79 c.1.9.15 135805 1jeoA 180 86.11 c.80.1.3 66611 1gudA 288 86.14 c.93.1.1 83326 1ii7A 333 86.17 d.159.1.4 62415 1gewA 356 86.63 c.67.1.1 60470 2qv5A 261 87.69 2efjA 384 88.21 2nwrA 267 89.29