# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 5.04e-22 2goyA 275 5.49e-22 1surA 215 1.43e-20 c.26.2.2 31620 1sur 215 5.71e-20 1zunA 325 1.17e-17 c.26.2.2 125676 1wy5A 317 2.92e-14 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 7.45e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 8.95e-11 c.26.2.1 122186 2dplA 308 9.83e-11 1kqpA 271 3.28e-10 c.26.2.1 72883 1k92A 455 2.21e-09 c.26.2.1,d.210.1.1 68325,68326 1wxiA 275 3.04e-09 c.26.2.1 121400 2hmaA 376 4.20e-09 1vl2A 421 2.18e-08 c.26.2.1,d.210.1.1 108708,108709 1ru8A 232 2.71e-08 c.26.2.1 97849 1korA 400 4.43e-08 c.26.2.1,d.210.1.1 72824,72825 2pg3A 232 1.44e-07 2e18A 257 1.72e-07 2d13A 227 7.00e-07 c.26.2.1 131121 2c5sA 413 5.39e-06 c.26.2.6,d.308.1.1 129950,129951 1m1zA 513 1.03e-05 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 0.000375 c.26.2.1,d.153.1.1 31616,41834 1gpmA 525 0.002534 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1q15A 503 0.008216 c.26.2.1,d.153.1.1 95538,95539 1eluA 390 0.9439 c.67.1.3 34434 1elqA 390 1.217 c.67.1.3 34436 2bkxA 242 1.269 1ne7A 289 2.201 c.124.1.1 91833 1vbkA 307 2.230 c.26.2.6,d.308.1.1 119957,119958 2hy1A 280 2.781 2gdjA 264 2.852 c.37.1.11 135018 2dxnA 274 2.919 1xm7A 195 3.542 d.159.1.8 115473 1y8cA 246 4.017 c.66.1.43 116563 2pfsA 150 4.291 1fs5A 266 4.535 c.124.1.1 65044 2blnA 305 4.609 b.46.1.1,c.65.1.1 128734,128735 1vl1A 232 5.154 c.124.1.1 108707 1u32A 293 5.439 d.159.1.3 107631 2q8uA 336 6.274 1wyuA 438 6.470 c.67.1.7 121452 2ac2A 309 7.361 1t3iA 420 7.728 c.67.1.3 106354 2h1vA 310 7.810 1tq8A 163 7.823 c.26.2.4 107204 1v73A 342 7.890 2i1qA 322 8.394 a.60.4.1,c.37.1.11 136984,136985 1jmvA 141 9.420 c.26.2.4 66897 2nxfA 322 9.568 2o0mA 345 9.654 2z08A 137 10.27 2j0eA 266 10.53 1dozA 309 12.59 c.92.1.1 35592 2ri0A 234 13.03 1wjgA 137 13.30 c.26.2.4 114696 1jsxA 207 13.30 c.66.1.20 71846 2hrcA 359 13.45 c.92.1.1 136687 1ipaA 274 13.69 c.116.1.1,d.79.3.3 71254,71255 1jflA 228 16.65 c.78.2.1,c.78.2.1 71656,71657 2o2gA 223 17.11 1jf9A 408 17.75 c.67.1.3 62931 1fmtA 314 18.94 b.46.1.1,c.65.1.1 25758,34174 1y89A 238 19.16 1fjmA 330 19.50 d.159.1.3 42082 2vlbA 251 21.25 2gzmA 267 22.67 1j8yF 297 23.31 a.24.13.1,c.37.1.10 62747,62748 4xis 387 23.43 1jk7A 323 23.85 d.159.1.3 63144 2yxdA 183 24.35 1hrkA 359 24.49 c.92.1.1 61228 1zwxA 301 25.67 d.151.1.3 125752 2dr1A 386 25.79 1w24A 182 26.58 d.159.1.7 120579 1ecpA 238 28.01 c.56.2.1 33775 2hdyA 440 29.16 2bw0A 329 29.80 b.46.1.1,c.65.1.1 129303,129304 1iugA 352 30.04 c.67.1.3 90699 2dumA 170 30.15 2nxcA 254 30.52 c.66.1.39 138739 2ac4A 309 31.07 1i5gA 144 32.52 c.47.1.10 61784 1hw6A 278 32.53 c.1.7.1 61296 2qe6A 274 32.58 1nnwA 252 32.93 d.159.1.5 80674 1kpgA 287 33.11 c.66.1.18 68735 1dl5A 317 33.66 c.66.1.7,d.197.1.1 64720,64721 1floA 422 33.69 a.60.9.1,d.163.1.1 18106,42166 1i60A 278 33.69 c.1.15.4 71118 2vd6A 503 34.33 2jh3A 474 35.10 2pjdA 343 35.38 1h5yA 253 36.45 c.1.2.1 65638 1s3iA 310 39.64 b.46.1.1,c.65.1.1 98435,98436 1o54A 277 40.02 c.66.1.13 92482 1tfr 305 40.71 2okgA 255 40.76 1s95A 333 42.46 d.159.1.3 105375 2b9eA 303 43.07 c.66.1.38 128124 1muwA 386 43.64 c.1.15.3 79495 1uf3A 228 43.92 d.159.1.6 99317 1vid 221 43.98 2o57A 297 44.10 2ei9A 240 44.44 1j96A 323 44.47 c.1.7.1 71616 2hejA 323 44.72 1k4iA 233 44.83 d.115.1.2 72056 3caiA 406 45.41 1pbtA 244 45.52 c.124.1.1 94416 2dr3A 247 45.86 2h3hA 313 46.20 1kmkA 406 47.90 c.67.1.3 68696 2yvtA 260 48.11 1qtwA 285 48.42 c.1.15.1 29392 1ujqA 305 49.89 c.1.12.7 99463 3xis 387 50.04 1w8gA 234 50.56 2r3sA 335 51.48 1eg5A 384 52.12 c.67.1.3 34429 2qvcA 313 52.13 3ch7A 266 52.51 1tfrA 305 52.80 a.60.7.1,c.120.1.2 18081,33351 1mnaA 298 53.74 c.69.1.22 79322 1g57A 217 55.69 d.115.1.2 60253 1ads 315 57.84 1vp8A 201 59.40 c.49.1.2 113947 1us0A 316 59.79 c.1.7.1 99850 2gwgA 350 59.84 c.1.9.15 135805 1l1eA 287 61.05 c.66.1.18 73454 1jg1A 235 61.46 c.66.1.7 66661 2j91A 503 61.83 1mjhA 162 61.84 c.26.2.4 31639 1kngA 156 67.14 c.47.1.10 72777 2a22A 215 67.17 d.159.1.7 126025 2pnfA 248 67.73 1m32A 366 68.86 c.67.1.3 78508 2h00A 254 69.38 c.66.1.54 135925 1k1eA 180 69.64 c.108.1.5 67995 2eq5A 228 70.36 1zgdA 312 73.33 3c6qA 311 73.34 2ax3A 502 74.27 c.72.1.4,c.104.1.1 127477,127478 1zuaX 317 74.58 1ur3M 319 74.95 c.1.7.1 99806 1npyA 271 76.30 c.2.1.7,c.58.1.5 85995,85996 2fiqA 420 76.46 c.1.10.7 133527 1byrA 155 77.22 d.136.1.1 41450 2gh1A 301 77.38 c.66.1.49 135170 2avdA 219 80.73 c.66.1.1 127377 1st9A 143 80.76 c.47.1.10 98987 1dvjA 246 81.27 c.1.2.3 28546 1gudA 288 81.79 c.93.1.1 83326 3cssA 267 84.40 1s1pA 331 84.47 c.1.7.1 98350 2qv5A 261 84.99 1fyeA 229 85.94 c.23.16.4 31477 2jfuA 291 86.54 1frb 315 86.60 1tksA 204 88.74 d.115.1.2 107114