# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 1.95e-22 2goyA 275 7.20e-22 1surA 215 8.46e-21 c.26.2.2 31620 1sur 215 3.17e-20 1zunA 325 2.16e-17 c.26.2.2 125676 1wy5A 317 1.37e-13 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 6.22e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 9.08e-11 c.26.2.1 122186 2dplA 308 1.99e-10 1wxiA 275 3.62e-10 c.26.2.1 121400 1k92A 455 4.63e-10 c.26.2.1,d.210.1.1 68325,68326 1kqpA 271 6.68e-10 c.26.2.1 72883 2hmaA 376 3.55e-09 1vl2A 421 4.96e-09 c.26.2.1,d.210.1.1 108708,108709 1korA 400 8.25e-09 c.26.2.1,d.210.1.1 72824,72825 1ru8A 232 1.55e-08 c.26.2.1 97849 2pg3A 232 9.63e-08 2e18A 257 4.59e-07 1m1zA 513 8.95e-07 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 1.85e-06 c.26.2.1 131121 2c5sA 413 4.49e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 5.55e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.000966 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.01960 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.5712 1ne7A 289 0.6163 c.124.1.1 91833 2q8uA 336 0.7884 2dxnA 274 1.050 1eluA 390 1.847 c.67.1.3 34434 2hy1A 280 1.886 2pfsA 150 2.730 1elqA 390 2.788 c.67.1.3 34436 1tq8A 163 3.045 c.26.2.4 107204 1wyuA 438 3.388 c.67.1.7 121452 2nxfA 322 3.628 1y8cA 246 4.517 c.66.1.43 116563 1fs5A 266 4.608 c.124.1.1 65044 1xm7A 195 4.881 d.159.1.8 115473 1eg5A 384 5.041 c.67.1.3 34429 2blnA 305 5.180 b.46.1.1,c.65.1.1 128734,128735 2gdjA 264 6.052 c.37.1.11 135018 1vl1A 232 6.541 c.124.1.1 108707 1y89A 238 6.605 1t3iA 420 6.707 c.67.1.3 106354 1ipaA 274 6.725 c.116.1.1,d.79.3.3 71254,71255 2j0eA 266 7.059 1vbkA 307 7.166 c.26.2.6,d.308.1.1 119957,119958 1jmvA 141 8.726 c.26.2.4 66897 1iugA 352 9.277 c.67.1.3 90699 2i1qA 322 10.84 a.60.4.1,c.37.1.11 136984,136985 2ac2A 309 11.15 1j8yF 297 14.51 a.24.13.1,c.37.1.10 62747,62748 3ch7A 266 14.97 2z08A 137 15.34 1w24A 182 16.55 d.159.1.7 120579 2bw0A 329 16.99 b.46.1.1,c.65.1.1 129303,129304 1jf9A 408 17.37 c.67.1.3 62931 1ta8A 332 17.45 d.142.2.2 112375 1pbtA 244 17.86 c.124.1.1 94416 1fmtA 314 17.93 b.46.1.1,c.65.1.1 25758,34174 1wjgA 137 18.12 c.26.2.4 114696 1zwxA 301 18.62 d.151.1.3 125752 2o0mA 345 19.75 1s3iA 310 20.07 b.46.1.1,c.65.1.1 98435,98436 1u32A 293 23.13 d.159.1.3 107631 1vp8A 201 23.68 c.49.1.2 113947 1uwcA 261 23.84 c.69.1.17 100101 1s95A 333 24.64 d.159.1.3 105375 1fyeA 229 26.02 c.23.16.4 31477 1i60A 278 28.73 c.1.15.4 71118 2h1vA 310 30.24 2hejA 323 31.35 2eg6A 347 32.11 1dozA 309 32.42 c.92.1.1 35592 1m32A 366 32.88 c.67.1.3 78508 1vicA 262 34.03 c.68.1.13 100756 2gwdA 449 34.18 3cssA 267 34.64 1ek4A 418 34.78 c.95.1.1,c.95.1.1 59436,59437 1pmmA 466 36.83 c.67.1.6 94901 1frb 315 36.88 2yvtA 260 37.98 2b9eA 303 38.02 c.66.1.38 128124 1fjmA 330 38.25 d.159.1.3 42082 1uf3A 228 39.79 d.159.1.6 99317 2cksA 306 41.87 2qulA 290 41.88 1us0A 316 42.52 c.1.7.1 99850 1ads 315 43.00 2vlbA 251 43.04 2hrcA 359 43.10 c.92.1.1 136687 2pyyA 228 44.48 1nnwA 252 47.03 d.159.1.5 80674 1j96A 323 48.65 c.1.7.1 71616 1z2wA 192 48.90 d.159.1.7 124390 1i5gA 144 50.20 c.47.1.10 61784 2dgkA 452 50.46 2dumA 170 50.93 2a22A 215 51.18 d.159.1.7 126025 1d7uA 433 52.24 c.67.1.4 34439 1jsxA 207 54.51 c.66.1.20 71846 1v73A 342 54.74 1a4mA 349 55.77 c.1.9.1 29014 1vr6A 350 55.90 c.1.10.4 120439 1ecpA 238 56.54 c.56.2.1 33775 1vjoA 393 57.41 c.67.1.3 100827 1c7gA 456 57.51 c.67.1.2 90415 2pjdA 343 58.13 1jeoA 180 58.42 c.80.1.3 66611 3caiA 406 58.75 3b6nA 187 58.89 1wvfA 520 58.99 d.58.32.1,d.145.1.1 121337,121338 1xxlA 239 59.09 c.66.1.41 116203 1zuaX 317 59.59 2hdyA 440 59.77 3bs5A 106 60.10 1ga8A 311 60.57 c.68.1.4 34516 1jk7A 323 62.31 d.159.1.3 63144 1ii7A 333 63.79 d.159.1.4 62415 1zgdA 312 64.23 1cs1A 386 64.32 c.67.1.3 34399 1luaA 287 65.12 c.2.1.7,c.58.1.4 78216,78217 1t8hA 277 66.09 d.194.1.2 106664 1qtwA 285 66.25 c.1.15.1 29392 2r3sA 335 68.37 1cr1A 296 68.54 c.37.1.11 32286 2qe6A 274 69.93 1gggA 226 71.08 c.94.1.1 35817 1af7A 274 72.06 a.58.1.1,c.66.1.8 17928,34203 1vid 221 72.89 2ac4A 309 74.34 1zczA 464 77.00 c.24.1.3,c.97.1.4 124923,124924 2agtA 319 77.16 2dr3A 247 77.65 2qvcA 313 77.72 1wdnA 226 77.73 c.94.1.1 35816 1a8rA 221 78.10 d.96.1.1 40587 2o2gA 223 78.98 1gewA 356 79.23 c.67.1.1 60470 2gwgA 350 79.52 c.1.9.15 135805 1ss9A 311 81.58 c.68.1.4 105978 1hw6A 278 83.32 c.1.7.1 61296 2ri0A 234 83.57 3grs 478 84.39 1nsjA 205 84.77 c.1.2.4 28560 1q6oA 216 84.99 c.1.2.3 95986 2okgA 255 87.03 1mi3A 322 88.02 c.1.7.1 91274 1xdzA 240 89.80 c.66.1.20 115196