# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.15e-18 2goyA 275 2.63e-18 1surA 215 4.47e-17 c.26.2.2 31620 1sur 215 1.45e-16 1zunA 325 3.36e-14 c.26.2.2 125676 1wy5A 317 2.57e-11 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 3.67e-11 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1k92A 455 1.27e-08 c.26.2.1,d.210.1.1 68325,68326 2dplA 308 2.13e-08 1wxiA 275 2.89e-08 c.26.2.1 121400 1vl2A 421 3.87e-08 c.26.2.1,d.210.1.1 108708,108709 1kqpA 271 4.33e-08 c.26.2.1 72883 1xngA 268 4.55e-08 c.26.2.1 122186 2hmaA 376 1.44e-07 1ru8A 232 2.99e-07 c.26.2.1 97849 1korA 400 4.40e-07 c.26.2.1,d.210.1.1 72824,72825 2pg3A 232 2.83e-06 2e18A 257 4.26e-06 2d13A 227 3.67e-05 c.26.2.1 131121 2c5sA 413 0.000137 c.26.2.6,d.308.1.1 129950,129951 1m1zA 513 0.000350 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 0.001322 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.005645 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.1466 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.7078 2hy1A 280 0.9597 2blnA 305 1.003 b.46.1.1,c.65.1.1 128734,128735 2q8uA 336 1.367 1ne7A 289 1.373 c.124.1.1 91833 2dxnA 274 2.229 2pfsA 150 2.452 1fs5A 266 3.118 c.124.1.1 65044 1pbtA 244 3.555 c.124.1.1 94416 1nnwA 252 4.317 d.159.1.5 80674 2o0mA 345 4.650 1jmvA 141 5.078 c.26.2.4 66897 1vl1A 232 5.363 c.124.1.1 108707 1ta8A 332 6.251 d.142.2.2 112375 1eluA 390 7.361 c.67.1.3 34434 1eg5A 384 8.011 c.67.1.3 34429 1tq8A 163 8.288 c.26.2.4 107204 1xm7A 195 9.273 d.159.1.8 115473 1y8cA 246 10.14 c.66.1.43 116563 1i60A 278 11.06 c.1.15.4 71118 1ipaA 274 11.06 c.116.1.1,d.79.3.3 71254,71255 2bw0A 329 11.08 b.46.1.1,c.65.1.1 129303,129304 1elqA 390 11.75 c.67.1.3 34436 2nxfA 322 12.12 1fmtA 314 12.13 b.46.1.1,c.65.1.1 25758,34174 1y89A 238 12.29 1ii7A 333 13.04 d.159.1.4 62415 2j0eA 266 13.72 1vbkA 307 14.10 c.26.2.6,d.308.1.1 119957,119958 1t3iA 420 14.53 c.67.1.3 106354 1s95A 333 14.94 d.159.1.3 105375 1fjmA 330 17.46 d.159.1.3 42082 2og2A 359 17.80 2yvtA 260 18.83 1s3iA 310 19.26 b.46.1.1,c.65.1.1 98435,98436 1iugA 352 19.31 c.67.1.3 90699 3ch7A 266 21.64 2i1qA 322 23.19 a.60.4.1,c.37.1.11 136984,136985 2gdjA 264 23.27 c.37.1.11 135018 1vmaA 306 23.48 a.24.13.1,c.37.1.10 108887,108888 2hejA 323 24.52 1jvnA 555 26.17 c.1.2.1,c.23.16.1 67355,67356 1tqyB 415 27.68 c.95.1.1,c.95.1.1 107247,107248 1m32A 366 27.84 c.67.1.3 78508 2hzgA 401 29.12 1frb 315 29.23 1qs0A 407 29.62 c.36.1.11 31829 3grs 478 29.93 2z08A 137 30.80 1wjgA 137 32.57 c.26.2.4 114696 1jk7A 323 34.06 d.159.1.3 63144 1uteA 313 35.50 d.159.1.1 42078 2ac2A 309 38.76 1u32A 293 38.99 d.159.1.3 107631 3cssA 267 40.19 2nq5A 755 40.30 3b9qA 302 40.76 1ek4A 418 41.08 c.95.1.1,c.95.1.1 59436,59437 1b04A 318 41.60 d.142.2.2 41579 1gesA 450 42.66 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1s8eA 333 42.91 d.159.1.4 105368 1kit 757 43.86 1ss9A 311 45.72 c.68.1.4 105978 1w24A 182 46.54 d.159.1.7 120579 1j8yF 297 46.80 a.24.13.1,c.37.1.10 62747,62748 1w9pA 433 47.25 c.1.8.5,d.26.3.1 114412,114413 1a76A 326 48.51 a.60.7.1,c.120.1.2 18091,33361 2gwdA 449 48.94 1ga8A 311 49.34 c.68.1.4 34516 1dozA 309 49.45 c.92.1.1 35592 1gsoA 431 49.54 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1twiA 434 49.63 b.49.2.3,c.1.6.1 107399,107400 2h1vA 310 50.67 2b9eA 303 50.70 c.66.1.38 128124 1w36B 1180 51.86 c.37.1.19,c.37.1.19,c.52.1.24 114122,114123,114124 2ax3A 502 53.54 c.72.1.4,c.104.1.1 127477,127478 2qhsA 237 53.93 1af7A 274 55.61 a.58.1.1,c.66.1.8 17928,34203 2rdxA 379 56.03 2pjdA 343 56.37 1vp8A 201 57.47 c.49.1.2 113947 1reoA 486 57.79 c.3.1.2,d.16.1.5 97325,97326 2h1yA 321 60.02 1uf3A 228 61.79 d.159.1.6 99317 1bg1A 722 62.36 a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 2og9A 393 62.43 2qgmA 445 63.27 1m3sA 186 64.03 c.80.1.3 78573 2i33A 258 64.71 1j96A 323 66.37 c.1.7.1 71616 2bkwA 385 68.28 c.67.1.3 128714 2v7pA 310 69.47 1tfr 305 69.75 2cvhA 220 69.96 1us0A 316 69.99 c.1.7.1 99850 2a0nA 265 71.78 c.1.2.1 125961 1jsxA 207 72.16 c.66.1.20 71846 1k77A 260 72.18 c.1.15.5 72096 2dq6A 870 74.13 1tfrA 305 76.28 a.60.7.1,c.120.1.2 18081,33351 1uwcA 261 78.92 c.69.1.17 100101 2i4lA 458 81.24 1zmdA 474 82.32 1r5jA 337 82.77 c.77.1.5 97097 1h0hA 977 83.67 b.52.2.2,c.81.1.1 76435,76436 1z2wA 192 83.68 d.159.1.7 124390 1jf9A 408 84.75 c.67.1.3 62931 1llfA 534 85.15 c.69.1.17 78094 1aipA 405 85.61 b.43.3.1,b.44.1.1,c.37.1.8 25697,25737,32132 2gwgA 350 86.95 c.1.9.15 135805 2qddA 378 87.28 1wvfA 520 88.44 d.58.32.1,d.145.1.1 121337,121338 2hbvA 334 89.03 c.1.9.15 136320 2ap1A 327 89.53 c.55.1.10,c.55.1.10 127108,127109 1a4mA 349 89.69 c.1.9.1 29014