# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 9.03e-22 2goyA 275 2.06e-21 1surA 215 2.89e-20 c.26.2.2 31620 1sur 215 1.08e-19 1zunA 325 5.19e-17 c.26.2.2 125676 1wy5A 317 2.43e-13 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 9.47e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 1.71e-10 c.26.2.1 122186 2dplA 308 3.34e-10 1k92A 455 5.15e-10 c.26.2.1,d.210.1.1 68325,68326 1wxiA 275 6.40e-10 c.26.2.1 121400 1kqpA 271 1.03e-09 c.26.2.1 72883 2hmaA 376 4.91e-09 1vl2A 421 6.51e-09 c.26.2.1,d.210.1.1 108708,108709 1korA 400 9.21e-09 c.26.2.1,d.210.1.1 72824,72825 1ru8A 232 2.00e-08 c.26.2.1 97849 2pg3A 232 1.06e-07 2e18A 257 7.22e-07 1m1zA 513 9.03e-07 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 1.58e-06 c.26.2.1 131121 2c5sA 413 3.54e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 7.46e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.001346 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.02925 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2q8uA 336 0.5804 2bkxA 242 0.6062 1ne7A 289 0.6887 c.124.1.1 91833 2dxnA 274 0.9935 2hy1A 280 1.487 1eluA 390 2.321 c.67.1.3 34434 1tq8A 163 2.455 c.26.2.4 107204 2pfsA 150 2.583 2nxfA 322 3.226 1xm7A 195 3.703 d.159.1.8 115473 1elqA 390 3.747 c.67.1.3 34436 2blnA 305 4.179 b.46.1.1,c.65.1.1 128734,128735 1y8cA 246 4.858 c.66.1.43 116563 1eg5A 384 5.178 c.67.1.3 34429 1wyuA 438 5.206 c.67.1.7 121452 1fs5A 266 5.844 c.124.1.1 65044 1vbkA 307 5.863 c.26.2.6,d.308.1.1 119957,119958 1jmvA 141 6.090 c.26.2.4 66897 2j0eA 266 6.315 1y89A 238 6.416 1ipaA 274 6.584 c.116.1.1,d.79.3.3 71254,71255 1vl1A 232 6.839 c.124.1.1 108707 2gdjA 264 7.187 c.37.1.11 135018 1t3iA 420 7.624 c.67.1.3 106354 3ch7A 266 8.938 2i1qA 322 11.24 a.60.4.1,c.37.1.11 136984,136985 2z08A 137 11.26 1j8yF 297 11.71 a.24.13.1,c.37.1.10 62747,62748 1iugA 352 12.29 c.67.1.3 90699 1wjgA 137 12.53 c.26.2.4 114696 2ac2A 309 13.33 2bw0A 329 13.48 b.46.1.1,c.65.1.1 129303,129304 1u32A 293 14.36 d.159.1.3 107631 1s3iA 310 14.80 b.46.1.1,c.65.1.1 98435,98436 1jf9A 408 15.39 c.67.1.3 62931 1pbtA 244 15.44 c.124.1.1 94416 1fmtA 314 15.77 b.46.1.1,c.65.1.1 25758,34174 1s95A 333 17.63 d.159.1.3 105375 2o0mA 345 18.51 1w24A 182 18.81 d.159.1.7 120579 1zwxA 301 20.67 d.151.1.3 125752 3cssA 267 22.16 1i60A 278 24.58 c.1.15.4 71118 1ta8A 332 26.04 d.142.2.2 112375 1fjmA 330 26.79 d.159.1.3 42082 1vp8A 201 28.32 c.49.1.2 113947 2b9eA 303 28.53 c.66.1.38 128124 1ek4A 418 29.22 c.95.1.1,c.95.1.1 59436,59437 1uwcA 261 30.21 c.69.1.17 100101 2h1vA 310 31.84 1v73A 342 32.70 2hejA 323 33.30 1vicA 262 33.92 c.68.1.13 100756 2eg6A 347 34.66 1pmmA 466 34.73 c.67.1.6 94901 1m32A 366 34.92 c.67.1.3 78508 1dozA 309 36.37 c.92.1.1 35592 1jk7A 323 37.35 d.159.1.3 63144 1uf3A 228 38.52 d.159.1.6 99317 2dumA 170 39.51 1fyeA 229 40.77 c.23.16.4 31477 1z2wA 192 42.52 d.159.1.7 124390 1i5gA 144 42.81 c.47.1.10 61784 2yvtA 260 43.49 1nnwA 252 44.89 d.159.1.5 80674 1ii7A 333 44.98 d.159.1.4 62415 2dgkA 452 46.97 2a22A 215 47.93 d.159.1.7 126025 1ads 315 48.38 2hrcA 359 49.25 c.92.1.1 136687 2vlbA 251 49.84 2qulA 290 50.48 2cksA 306 52.48 1frb 315 52.53 1ecpA 238 53.26 c.56.2.1 33775 1jsxA 207 54.75 c.66.1.20 71846 1us0A 316 55.91 c.1.7.1 99850 2pyyA 228 56.89 3b6nA 187 56.95 1ga8A 311 57.58 c.68.1.4 34516 1c7gA 456 57.64 c.67.1.2 90415 1af7A 274 58.70 a.58.1.1,c.66.1.8 17928,34203 2o2gA 223 59.86 1d7uA 433 62.32 c.67.1.4 34439 2pjdA 343 62.73 2qe6A 274 63.00 1jeoA 180 64.58 c.80.1.3 66611 1zgdA 312 65.26 1cr1A 296 66.55 c.37.1.11 32286 1zuaX 317 66.80 1wvfA 520 67.02 d.58.32.1,d.145.1.1 121337,121338 2qhsA 237 67.26 1j96A 323 67.32 c.1.7.1 71616 2gwgA 350 67.83 c.1.9.15 135805 2r3sA 335 70.90 3caiA 406 71.71 1ss9A 311 73.43 c.68.1.4 105978 1qtwA 285 74.31 c.1.15.1 29392 1hw6A 278 74.77 c.1.7.1 61296 2q09A 416 75.73 1v0wA 506 77.36 d.136.1.2,d.136.1.2 108220,108221 2okgA 255 78.23 3bs5A 106 78.33 2hdyA 440 78.61 1vid 221 80.08 2ah5A 210 80.15 c.108.1.6 126742 1gggA 226 80.20 c.94.1.1 35817 2agtA 319 80.30 1xxlA 239 80.52 c.66.1.41 116203 1zczA 464 80.76 c.24.1.3,c.97.1.4 124923,124924 1luaA 287 81.09 c.2.1.7,c.58.1.4 78216,78217 3grs 478 81.26 2ri0A 234 81.67 1mi3A 322 83.86 c.1.7.1 91274 2gwdA 449 84.19 1ivnA 190 85.06 c.23.10.5 83719 1vr6A 350 85.76 c.1.10.4 120439 1cs1A 386 86.28 c.67.1.3 34399 2dr3A 247 86.35 1h1yA 228 87.48 c.1.2.2 76506 1h5yA 253 88.57 c.1.2.1 65638 2ax3A 502 88.91 c.72.1.4,c.104.1.1 127477,127478 3b9qA 302 89.25 1t8hA 277 89.29 d.194.1.2 106664 2bekA 257 89.46