# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 3.14e-24 2goyA 275 7.09e-24 1surA 215 1.59e-22 c.26.2.2 31620 1sur 215 6.81e-22 1zunA 325 1.40e-18 c.26.2.2 125676 1wy5A 317 6.91e-15 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 3.02e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1k92A 455 2.72e-11 c.26.2.1,d.210.1.1 68325,68326 1xngA 268 3.75e-11 c.26.2.1 122186 2dplA 308 4.87e-11 1wxiA 275 1.11e-10 c.26.2.1 121400 1kqpA 271 1.40e-10 c.26.2.1 72883 1vl2A 421 7.28e-10 c.26.2.1,d.210.1.1 108708,108709 2hmaA 376 1.33e-09 1korA 400 1.98e-09 c.26.2.1,d.210.1.1 72824,72825 1ru8A 232 3.27e-09 c.26.2.1 97849 2pg3A 232 2.95e-08 2d13A 227 1.63e-07 c.26.2.1 131121 2e18A 257 2.28e-07 1m1zA 513 2.34e-07 c.26.2.1,d.153.1.1 78457,78458 2c5sA 413 1.74e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 2.93e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.001218 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.003295 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.5038 2q8uA 336 0.5992 1ne7A 289 0.8718 c.124.1.1 91833 2dxnA 274 1.279 2blnA 305 2.904 b.46.1.1,c.65.1.1 128734,128735 1ipaA 274 2.946 c.116.1.1,d.79.3.3 71254,71255 1tq8A 163 3.570 c.26.2.4 107204 1y89A 238 4.194 2j0eA 266 4.375 1t3iA 420 5.451 c.67.1.3 106354 2hy1A 280 5.781 2nxfA 322 6.020 1eluA 390 6.097 c.67.1.3 34434 1j8yF 297 6.219 a.24.13.1,c.37.1.10 62747,62748 1xm7A 195 6.933 d.159.1.8 115473 1fs5A 266 6.968 c.124.1.1 65044 2pfsA 150 7.050 3ch7A 266 7.148 1jf9A 408 7.570 c.67.1.3 62931 1elqA 390 7.626 c.67.1.3 34436 1eg5A 384 7.929 c.67.1.3 34429 1y8cA 246 10.36 c.66.1.43 116563 1jmvA 141 10.60 c.26.2.4 66897 1wyuA 438 11.76 c.67.1.7 121452 2o0mA 345 12.44 1vl1A 232 12.90 c.124.1.1 108707 1wjgA 137 12.95 c.26.2.4 114696 2bw0A 329 13.39 b.46.1.1,c.65.1.1 129303,129304 1zwxA 301 16.10 d.151.1.3 125752 3cssA 267 16.79 1fmtA 314 16.80 b.46.1.1,c.65.1.1 25758,34174 1ek4A 418 17.08 c.95.1.1,c.95.1.1 59436,59437 1u32A 293 17.58 d.159.1.3 107631 2hejA 323 19.02 1s3iA 310 19.22 b.46.1.1,c.65.1.1 98435,98436 1ta8A 332 19.96 d.142.2.2 112375 1pmmA 466 20.38 c.67.1.6 94901 1vp8A 201 21.23 c.49.1.2 113947 1vbkA 307 21.48 c.26.2.6,d.308.1.1 119957,119958 2qe6A 274 21.89 1i5gA 144 22.07 c.47.1.10 61784 1uwcA 261 22.33 c.69.1.17 100101 1fjmA 330 23.02 d.159.1.3 42082 2gdjA 264 23.72 c.37.1.11 135018 1w24A 182 24.32 d.159.1.7 120579 1m32A 366 26.22 c.67.1.3 78508 1i60A 278 28.33 c.1.15.4 71118 2z08A 137 28.54 1z2wA 192 29.36 d.159.1.7 124390 1jsxA 207 31.84 c.66.1.20 71846 1jk7A 323 32.53 d.159.1.3 63144 1s95A 333 33.53 d.159.1.3 105375 2ri0A 234 34.04 1gggA 226 35.35 c.94.1.1 35817 2vlbA 251 35.62 2okgA 255 36.23 1a76A 326 36.32 a.60.7.1,c.120.1.2 18091,33361 1j96A 323 36.49 c.1.7.1 71616 1jeoA 180 37.33 c.80.1.3 66611 1vicA 262 38.48 c.68.1.13 100756 1fyeA 229 39.23 c.23.16.4 31477 2p1zA 180 39.78 1pbtA 244 40.69 c.124.1.1 94416 1ujqA 305 40.93 c.1.12.7 99463 1bf5A 545 41.43 a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2pjdA 343 41.84 1dl5A 317 42.49 c.66.1.7,d.197.1.1 64720,64721 2e7jA 371 43.04 2gwgA 350 45.08 c.1.9.15 135805 1hw6A 278 45.45 c.1.7.1 61296 2q09A 416 45.49 2dgkA 452 45.66 2i1qA 322 45.93 a.60.4.1,c.37.1.11 136984,136985 2e5fA 325 47.02 2ac2A 309 49.03 1af7A 274 52.36 a.58.1.1,c.66.1.8 17928,34203 2eg6A 347 53.28 1nsjA 205 53.94 c.1.2.4 28560 1cb0A 283 54.49 c.56.2.1 33790 3b6nA 187 56.65 2yvtA 260 58.09 1jvnA 555 59.07 c.1.2.1,c.23.16.1 67355,67356 1ga8A 311 60.35 c.68.1.4 34516 1fsgA 233 61.21 c.61.1.1 34029 1frb 315 62.60 1kngA 156 63.32 c.47.1.10 72777 1b9hA 388 64.47 c.67.1.4 34488 1luaA 287 64.72 c.2.1.7,c.58.1.4 78216,78217 2o2gA 223 64.79 2hlsA 243 65.66 1wdnA 226 65.75 c.94.1.1 35816 1d7uA 433 66.33 c.67.1.4 34439 2pyyA 228 66.74 1mjhA 162 68.33 c.26.2.4 31639 2rjbA 455 69.03 1uf3A 228 69.25 d.159.1.6 99317 1floA 422 69.63 a.60.9.1,d.163.1.1 18106,42166 1ecpA 238 69.99 c.56.2.1 33775 1xdzA 240 70.34 c.66.1.20 115196 1w8gA 234 70.99 2df8A 325 72.75 1v73A 342 76.05 1xtpA 254 76.25 c.66.1.42 116031 2qv5A 261 76.30 3ciwA 348 77.39 1wdpA 495 77.93 c.1.8.1 120907 1bc5A 269 78.37 a.58.1.1,c.66.1.8 17929,34204 1hd7A 318 79.00 d.151.1.1 41780 3c6qA 311 79.03 2fnuA 375 80.02 c.67.1.4 133831 1vid 221 80.82 1ftkA 279 80.94 c.94.1.1 35819 1qzzA 374 81.73 a.4.5.29,c.66.1.12 96719,96720 2ac7A 235 82.54 c.56.2.1 126543 1dozA 309 83.34 c.92.1.1 35592 1e20A 209 83.94 c.34.1.1 31759 1yzhA 214 84.19 c.66.1.53 124277 3b9qA 302 85.11 2h1vA 310 85.23 3grs 478 86.04 2ggtA 164 86.23 c.47.1.10 135156 1lstA 239 87.39 c.94.1.1 35755 3caiA 406 87.51 2qhsA 237 87.93 2b9eA 303 89.51 c.66.1.38 128124 1nnwA 252 89.60 d.159.1.5 80674 1iugA 352 89.93 c.67.1.3 90699