# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 4.04e-25 2goyA 275 7.66e-25 1surA 215 1.38e-23 c.26.2.2 31620 1sur 215 6.10e-23 1zunA 325 4.13e-19 c.26.2.2 125676 1wy5A 317 1.71e-15 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 1.30e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 9.43e-12 c.26.2.1 122186 2dplA 308 9.89e-12 1k92A 455 1.23e-11 c.26.2.1,d.210.1.1 68325,68326 1wxiA 275 5.97e-11 c.26.2.1 121400 1kqpA 271 6.73e-11 c.26.2.1 72883 1vl2A 421 2.73e-10 c.26.2.1,d.210.1.1 108708,108709 1korA 400 4.01e-10 c.26.2.1,d.210.1.1 72824,72825 2hmaA 376 4.83e-10 1ru8A 232 1.27e-09 c.26.2.1 97849 2pg3A 232 1.60e-08 2e18A 257 1.16e-07 2d13A 227 1.66e-07 c.26.2.1 131121 1m1zA 513 2.16e-07 c.26.2.1,d.153.1.1 78457,78458 2c5sA 413 1.04e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 1.19e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.000757 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.001644 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.5281 2dxnA 274 1.043 2blnA 305 1.249 b.46.1.1,c.65.1.1 128734,128735 1ne7A 289 1.412 c.124.1.1 91833 2q8uA 336 1.997 1ipaA 274 3.355 c.116.1.1,d.79.3.3 71254,71255 2hy1A 280 3.406 2pfsA 150 3.441 1tq8A 163 4.145 c.26.2.4 107204 2j0eA 266 4.730 2nxfA 322 5.187 1eg5A 384 5.415 c.67.1.3 34429 1y89A 238 5.792 1y8cA 246 6.155 c.66.1.43 116563 1jf9A 408 6.418 c.67.1.3 62931 1j8yF 297 6.966 a.24.13.1,c.37.1.10 62747,62748 1t3iA 420 7.073 c.67.1.3 106354 1fs5A 266 8.125 c.124.1.1 65044 3ch7A 266 8.127 1fmtA 314 8.169 b.46.1.1,c.65.1.1 25758,34174 1vbkA 307 8.355 c.26.2.6,d.308.1.1 119957,119958 2gdjA 264 8.794 c.37.1.11 135018 1eluA 390 8.944 c.67.1.3 34434 1wjgA 137 9.624 c.26.2.4 114696 1elqA 390 10.34 c.67.1.3 34436 1xm7A 195 10.45 d.159.1.8 115473 1vl1A 232 10.84 c.124.1.1 108707 2bw0A 329 11.26 b.46.1.1,c.65.1.1 129303,129304 2vlbA 251 11.65 1s3iA 310 12.86 b.46.1.1,c.65.1.1 98435,98436 1wyuA 438 12.90 c.67.1.7 121452 1jmvA 141 13.14 c.26.2.4 66897 2o0mA 345 13.19 1zwxA 301 13.23 d.151.1.3 125752 1vp8A 201 17.23 c.49.1.2 113947 1vicA 262 17.29 c.68.1.13 100756 1ta8A 332 18.30 d.142.2.2 112375 1u32A 293 19.14 d.159.1.3 107631 2ac2A 309 19.53 2ri0A 234 21.82 3cssA 267 21.98 1v73A 342 23.17 2z08A 137 23.88 1pmmA 466 26.08 c.67.1.6 94901 1pbtA 244 26.16 c.124.1.1 94416 1i60A 278 27.61 c.1.15.4 71118 1uwcA 261 28.19 c.69.1.17 100101 2h1vA 310 29.55 1s95A 333 30.38 d.159.1.3 105375 1iugA 352 30.71 c.67.1.3 90699 2i1qA 322 31.47 a.60.4.1,c.37.1.11 136984,136985 2hejA 323 31.52 2pyyA 228 32.39 1jsxA 207 33.02 c.66.1.20 71846 1dozA 309 34.06 c.92.1.1 35592 1m32A 366 35.38 c.67.1.3 78508 2b9eA 303 36.08 c.66.1.38 128124 1uf3A 228 39.33 d.159.1.6 99317 2gwgA 350 40.91 c.1.9.15 135805 2pjdA 343 41.36 1i5gA 144 41.39 c.47.1.10 61784 3b6nA 187 41.52 1fjmA 330 42.01 d.159.1.3 42082 1fyeA 229 42.13 c.23.16.4 31477 1ftkA 279 44.65 c.94.1.1 35819 3ciwA 348 45.72 2nxcA 254 45.72 c.66.1.39 138739 1jeoA 180 45.88 c.80.1.3 66611 1w24A 182 47.03 d.159.1.7 120579 1gggA 226 47.36 c.94.1.1 35817 1vr6A 350 47.60 c.1.10.4 120439 1ujqA 305 48.88 c.1.12.7 99463 1z2wA 192 49.17 d.159.1.7 124390 1jk7A 323 50.29 d.159.1.3 63144 1nsjA 205 52.69 c.1.2.4 28560 1zuaX 317 53.15 2ac7A 235 53.48 c.56.2.1 126543 4xis 387 54.46 2yvtA 260 55.12 1hw6A 278 56.20 c.1.7.1 61296 1km4A 247 56.98 c.1.2.3 72740 1a4mA 349 57.17 c.1.9.1 29014 2eg6A 347 57.59 1ivnA 190 59.63 c.23.10.5 83719 2dgkA 452 60.10 2qe6A 274 60.87 1k77A 260 62.27 c.1.15.5 72096 1dl5A 317 62.98 c.66.1.7,d.197.1.1 64720,64721 1h1yA 228 63.39 c.1.2.2 76506 1kngA 156 65.34 c.47.1.10 72777 1wdnA 226 66.12 c.94.1.1 35816 1uteA 313 66.98 d.159.1.1 42078 1zczA 464 67.84 c.24.1.3,c.97.1.4 124923,124924 2bekA 257 67.87 2p1zA 180 68.22 2rjbA 455 69.07 1vmaA 306 69.86 a.24.13.1,c.37.1.10 108887,108888 2o2gA 223 70.28 1d7uA 433 70.60 c.67.1.4 34439 1luaA 287 70.77 c.2.1.7,c.58.1.4 78216,78217 1xdzA 240 70.93 c.66.1.20 115196 1a8rA 221 71.22 d.96.1.1 40587 1exqA 154 71.36 c.55.3.2 33646 1wvfA 520 71.88 d.58.32.1,d.145.1.1 121337,121338 1ecpA 238 72.27 c.56.2.1 33775 2qhsA 237 73.47 1dvjA 246 74.28 c.1.2.3 28546 3bs5A 106 74.32 2hrcA 359 74.73 c.92.1.1 136687 2e7jA 371 74.77 1j96A 323 74.94 c.1.7.1 71616 2ehbD 143 75.43 3xis 387 77.10 2q09A 416 77.87 2okgA 255 78.06 2nwrA 267 79.18 3caiA 406 81.02 3c6qA 311 82.07 1mjhA 162 82.66 c.26.2.4 31639 1v5xA 203 86.08 c.1.2.4 100377 2a22A 215 87.44 d.159.1.7 126025 1frb 315 87.72 1o54A 277 87.77 c.66.1.13 92482 2h3hA 313 88.77 1ek4A 418 88.91 c.95.1.1,c.95.1.1 59436,59437 1st9A 143 89.10 c.47.1.10 98987 3grs 478 89.45 1z5nA 242 89.69