# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 2.73e-24 2goyA 275 6.53e-24 1surA 215 1.21e-22 c.26.2.2 31620 1sur 215 5.45e-22 1zunA 325 2.35e-18 c.26.2.2 125676 1wy5A 317 7.23e-15 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 3.91e-14 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 1.88e-11 c.26.2.1 122186 1k92A 455 2.43e-11 c.26.2.1,d.210.1.1 68325,68326 2dplA 308 3.66e-11 1wxiA 275 1.07e-10 c.26.2.1 121400 1kqpA 271 1.50e-10 c.26.2.1 72883 1vl2A 421 6.41e-10 c.26.2.1,d.210.1.1 108708,108709 1korA 400 1.42e-09 c.26.2.1,d.210.1.1 72824,72825 2hmaA 376 1.62e-09 1ru8A 232 1.72e-09 c.26.2.1 97849 2pg3A 232 2.37e-08 2e18A 257 1.41e-07 2d13A 227 3.01e-07 c.26.2.1 131121 1m1zA 513 5.00e-07 c.26.2.1,d.153.1.1 78457,78458 2c5sA 413 1.70e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 2.41e-05 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.000869 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.002410 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2bkxA 242 0.4251 2dxnA 274 0.8283 1ne7A 289 1.239 c.124.1.1 91833 2q8uA 336 1.291 2blnA 305 2.050 b.46.1.1,c.65.1.1 128734,128735 1ipaA 274 3.544 c.116.1.1,d.79.3.3 71254,71255 2nxfA 322 3.619 2hy1A 280 3.851 1y89A 238 3.941 1jf9A 408 4.166 c.67.1.3 62931 1t3iA 420 4.227 c.67.1.3 106354 2pfsA 150 4.528 1tq8A 163 4.951 c.26.2.4 107204 1eg5A 384 4.974 c.67.1.3 34429 1fs5A 266 5.336 c.124.1.1 65044 1y8cA 246 5.687 c.66.1.43 116563 1eluA 390 6.122 c.67.1.3 34434 2j0eA 266 6.189 1j8yF 297 7.233 a.24.13.1,c.37.1.10 62747,62748 1elqA 390 7.742 c.67.1.3 34436 1jmvA 141 7.778 c.26.2.4 66897 1wyuA 438 8.106 c.67.1.7 121452 1xm7A 195 9.596 d.159.1.8 115473 1wjgA 137 10.54 c.26.2.4 114696 1vl1A 232 10.73 c.124.1.1 108707 1vbkA 307 10.95 c.26.2.6,d.308.1.1 119957,119958 2gdjA 264 11.67 c.37.1.11 135018 1zwxA 301 11.68 d.151.1.3 125752 1fmtA 314 13.55 b.46.1.1,c.65.1.1 25758,34174 3ch7A 266 13.60 1vp8A 201 13.84 c.49.1.2 113947 2bw0A 329 14.36 b.46.1.1,c.65.1.1 129303,129304 1i60A 278 14.76 c.1.15.4 71118 2vlbA 251 16.73 2o0mA 345 17.57 1w24A 182 18.67 d.159.1.7 120579 1ta8A 332 20.57 d.142.2.2 112375 1s3iA 310 20.63 b.46.1.1,c.65.1.1 98435,98436 1u32A 293 22.43 d.159.1.3 107631 2ac2A 309 24.60 1iugA 352 25.84 c.67.1.3 90699 2ri0A 234 25.92 2z08A 137 26.68 2hejA 323 27.52 1gggA 226 27.79 c.94.1.1 35817 3cssA 267 28.12 1jsxA 207 29.66 c.66.1.20 71846 1pmmA 466 31.64 c.67.1.6 94901 1m32A 366 32.96 c.67.1.3 78508 1z2wA 192 33.98 d.159.1.7 124390 2i1qA 322 34.13 a.60.4.1,c.37.1.11 136984,136985 1uwcA 261 34.37 c.69.1.17 100101 2yvtA 260 34.57 1fyeA 229 35.37 c.23.16.4 31477 2pjdA 343 36.54 1a4mA 349 36.54 c.1.9.1 29014 1ftkA 279 36.94 c.94.1.1 35819 2pyyA 228 37.07 1vicA 262 39.73 c.68.1.13 100756 1s95A 333 40.01 d.159.1.3 105375 4xis 387 40.21 1pbtA 244 42.72 c.124.1.1 94416 3ciwA 348 43.23 1fjmA 330 43.30 d.159.1.3 42082 1luaA 287 43.46 c.2.1.7,c.58.1.4 78216,78217 3b9qA 302 44.34 2h1vA 310 45.47 1nnwA 252 47.90 d.159.1.5 80674 1jk7A 323 48.49 d.159.1.3 63144 1dozA 309 49.89 c.92.1.1 35592 1j96A 323 50.05 c.1.7.1 71616 2gwgA 350 50.22 c.1.9.15 135805 1hw6A 278 50.29 c.1.7.1 61296 1i5gA 144 50.32 c.47.1.10 61784 1v73A 342 50.73 1jeoA 180 51.96 c.80.1.3 66611 1vmaA 306 52.54 a.24.13.1,c.37.1.10 108887,108888 3b6nA 187 52.63 2ac7A 235 53.53 c.56.2.1 126543 1ujqA 305 53.81 c.1.12.7 99463 1zuaX 317 54.33 1wdnA 226 54.51 c.94.1.1 35816 3caiA 406 56.19 1us0A 316 57.75 c.1.7.1 99850 2e7jA 371 57.81 2qe6A 274 58.03 2dgkA 452 58.07 2p1zA 180 58.58 1xdzA 240 58.74 c.66.1.20 115196 1floA 422 60.06 a.60.9.1,d.163.1.1 18106,42166 1xtpA 254 61.22 c.66.1.42 116031 1ga8A 311 62.00 c.68.1.4 34516 1ecpA 238 64.12 c.56.2.1 33775 2h3hA 313 66.27 1ads 315 67.87 2b9eA 303 68.39 c.66.1.38 128124 1ek4A 418 68.80 c.95.1.1,c.95.1.1 59436,59437 2fnuA 375 68.92 c.67.1.4 133831 2hrcA 359 70.12 c.92.1.1 136687 3bs5A 106 70.63 2eg6A 347 70.72 2bx2L 517 70.86 2qhsA 237 71.92 1zczA 464 72.56 c.24.1.3,c.97.1.4 124923,124924 1dl5A 317 73.43 c.66.1.7,d.197.1.1 64720,64721 1nsjA 205 73.85 c.1.2.4 28560 1muwA 386 74.00 c.1.15.3 79495 1a76A 326 74.02 a.60.7.1,c.120.1.2 18091,33361 2okgA 255 74.39 1ivnA 190 74.74 c.23.10.5 83719 1b9hA 388 75.32 c.67.1.4 34488 2hk0A 309 75.96 1vr6A 350 76.17 c.1.10.4 120439 3c6qA 311 76.21 2dumA 170 76.32 2rjbA 455 76.92 2e5fA 325 77.34 2o2gA 223 79.44 1frb 315 79.49 2qvcA 313 79.63 1lssA 140 79.77 c.2.1.9 74246 2nxcA 254 80.87 c.66.1.39 138739 1wdpA 495 81.98 c.1.8.1 120907 2hlsA 243 82.62 1z5nA 242 82.74 1b04A 318 83.46 d.142.2.2 41579 2a3nA 355 83.66 1c7gA 456 84.50 c.67.1.2 90415 2nwrA 267 87.41 2a0nA 265 88.84 c.1.2.1 125961