# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2goyA 275 2.24e-24 2oq2A 261 1.10e-23 1surA 215 3.58e-22 c.26.2.2 31620 1sur 215 4.87e-21 1zunA 325 1.39e-18 c.26.2.2 125676 1wy5A 317 1.33e-15 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 3.54e-13 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 1xngA 268 3.87e-11 c.26.2.1 122186 2dplA 308 1.50e-10 1kqpA 271 3.09e-10 c.26.2.1 72883 1wxiA 275 9.18e-10 c.26.2.1 121400 2hmaA 376 1.89e-09 1k92A 455 5.86e-09 c.26.2.1,d.210.1.1 68325,68326 2pg3A 232 1.27e-08 1ru8A 232 1.87e-08 c.26.2.1 97849 2e18A 257 7.80e-08 1vl2A 421 1.22e-07 c.26.2.1,d.210.1.1 108708,108709 1korA 400 6.65e-07 c.26.2.1,d.210.1.1 72824,72825 1m1zA 513 2.38e-06 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 2.68e-06 c.26.2.1 131121 2c5sA 413 9.64e-06 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 0.000596 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.003113 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.01610 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1u32A 293 0.9514 d.159.1.3 107631 1eluA 390 1.567 c.67.1.3 34434 2gdjA 264 1.739 c.37.1.11 135018 2bkxA 242 2.139 1elqA 390 2.330 c.67.1.3 34436 2hy1A 280 2.348 2blnA 305 2.864 b.46.1.1,c.65.1.1 128734,128735 1t3iA 420 3.007 c.67.1.3 106354 1ne7A 289 3.669 c.124.1.1 91833 1fjmA 330 5.085 d.159.1.3 42082 1xm7A 195 5.804 d.159.1.8 115473 1jk7A 323 5.815 d.159.1.3 63144 1wjgA 137 6.471 c.26.2.4 114696 2z08A 137 6.921 1j8yF 297 7.526 a.24.13.1,c.37.1.10 62747,62748 1y8cA 246 7.781 c.66.1.43 116563 1eg5A 384 8.624 c.67.1.3 34429 2o2gA 223 9.351 1vl1A 232 10.36 c.124.1.1 108707 2h1vA 310 10.57 2ac2A 309 11.69 1jf9A 408 12.28 c.67.1.3 62931 2ax3A 502 13.12 c.72.1.4,c.104.1.1 127477,127478 1af7A 274 13.39 a.58.1.1,c.66.1.8 17928,34203 2pfsA 150 13.57 1jsxA 207 14.09 c.66.1.20 71846 2dr1A 386 15.24 2dxnA 274 15.24 1escA 306 16.27 c.23.10.1 31334 1s95A 333 16.32 d.159.1.3 105375 1zwxA 301 16.61 d.151.1.3 125752 1y89A 238 16.62 1kmkA 406 17.82 c.67.1.3 68696 1uwcA 261 18.23 c.69.1.17 100101 2j0eA 266 18.42 1jflA 228 18.54 c.78.2.1,c.78.2.1 71656,71657 1m32A 366 19.32 c.67.1.3 78508 1bc5A 269 19.43 a.58.1.1,c.66.1.8 17929,34204 2eq5A 228 19.96 1i60A 278 21.41 c.1.15.4 71118 1i5gA 144 21.83 c.47.1.10 61784 2hdyA 440 22.18 2i1qA 322 22.74 a.60.4.1,c.37.1.11 136984,136985 1af7 274 22.84 1jmvA 141 23.61 c.26.2.4 66897 2gnpA 266 24.01 1fmtA 314 24.10 b.46.1.1,c.65.1.1 25758,34174 1xtpA 254 24.44 c.66.1.42 116031 1k07A 263 25.23 d.157.1.1 77218 2a22A 215 26.32 d.159.1.7 126025 1dozA 309 26.58 c.92.1.1 35592 1mjhA 162 29.79 c.26.2.4 31639 2aheA 267 29.93 2vlbA 251 30.37 1st9A 143 31.75 c.47.1.10 98987 2qe6A 274 32.15 2qv5A 261 33.61 2ywiA 196 34.52 1fs5A 266 35.20 c.124.1.1 65044 2yvtA 260 35.24 1uarA 285 36.10 c.46.1.2,c.46.1.2 107762,107763 2gzmA 267 36.96 2jh3A 474 37.17 1kpgA 287 38.30 c.66.1.18 68735 1uxoA 192 40.01 c.69.1.31 108121 1fcdA 401 42.94 c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 2bw0A 329 43.42 b.46.1.1,c.65.1.1 129303,129304 2o0mA 345 43.61 1k0mA 241 43.87 a.45.1.1,c.47.1.5 67949,67950 2dwuA 276 44.04 2rebA 352 47.94 c.37.1.11,d.48.1.1 32282,38767 1s3iA 310 48.58 b.46.1.1,c.65.1.1 98435,98436 2gwgA 350 48.59 c.1.9.15 135805 1vp8A 201 50.24 c.49.1.2 113947 2f9sA 151 50.90 c.47.1.10 133168 1w24A 182 51.02 d.159.1.7 120579 1qtwA 285 51.53 c.1.15.1 29392 3ch7A 266 55.25 1vi9A 299 56.46 c.72.1.5 100750 1jbwA 428 57.38 c.59.1.2,c.72.2.2 62860,62861 2gh1A 301 58.30 c.66.1.49 135170 2hrcA 359 59.24 c.92.1.1 136687 1luaA 287 59.27 c.2.1.7,c.58.1.4 78216,78217 1v2dA 381 59.33 c.67.1.1 108281 3bdvA 191 61.24 1mnaA 298 62.46 c.69.1.22 79322 2e7jA 371 63.03 2h00A 254 63.88 c.66.1.54 135925 1vjoA 393 66.02 c.67.1.3 100827 2pjdA 343 68.61 1rzuA 485 69.60 c.87.1.8 105140 3b9qA 302 70.35 1sffA 426 70.84 c.67.1.4 105482 1g57A 217 71.26 d.115.1.2 60253 1frb 315 71.78 1floA 422 73.46 a.60.9.1,d.163.1.1 18106,42166 1d7uA 433 73.78 c.67.1.4 34439 2p67A 341 76.06 1ir6A 424 76.70 c.107.1.2 71342 2avdA 219 78.45 c.66.1.1 127377 1zud1 251 79.25 2ak3A 226 79.76 c.37.1.1,g.41.2.1 31892,45193 1iugA 352 79.77 c.67.1.3 90699 1lu4A 136 80.80 c.47.1.10 91124 1hd7A 318 81.05 d.151.1.1 41780 1fgs 428 82.58 1kngA 156 83.65 c.47.1.10 72777 1hrkA 359 84.45 c.92.1.1 61228 1jeoA 180 84.88 c.80.1.3 66611 3bkwA 243 86.67 2dgkA 452 87.03 2jfuA 291 87.41 1km4A 247 87.81 c.1.2.3 72740 1j96A 323 88.52 c.1.7.1 71616 2piaA 321 88.59 b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1yzfA 195 89.09 c.23.10.5 124275 2ac4A 309 89.32