# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 7.16e-20 2goyA 275 9.47e-20 1surA 215 6.25e-19 c.26.2.2 31620 1sur 215 5.94e-18 1zunA 325 9.61e-16 c.26.2.2 125676 1wy5A 317 3.08e-13 c.26.2.5,d.229.1.1 121428,121429 1ni5A 433 3.01e-12 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2dplA 308 7.02e-10 1xngA 268 1.21e-09 c.26.2.1 122186 1kqpA 271 5.77e-09 c.26.2.1 72883 1wxiA 275 6.66e-09 c.26.2.1 121400 2hmaA 376 1.71e-08 1k92A 455 4.18e-08 c.26.2.1,d.210.1.1 68325,68326 1vl2A 421 1.02e-07 c.26.2.1,d.210.1.1 108708,108709 2pg3A 232 1.53e-07 1ru8A 232 1.77e-07 c.26.2.1 97849 1korA 400 1.97e-07 c.26.2.1,d.210.1.1 72824,72825 2e18A 257 6.00e-07 1m1zA 513 1.14e-06 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 8.93e-06 c.26.2.1 131121 2c5sA 413 2.90e-05 c.26.2.6,d.308.1.1 129950,129951 1ct9A 553 0.000717 c.26.2.1,d.153.1.1 31616,41834 1q15A 503 0.003762 c.26.2.1,d.153.1.1 95538,95539 1gpmA 525 0.007721 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1eluA 390 0.8342 c.67.1.3 34434 2bkxA 242 0.9526 1elqA 390 1.059 c.67.1.3 34436 2hy1A 280 2.202 1wjgA 137 2.363 c.26.2.4 114696 2z08A 137 2.722 1ne7A 289 2.853 c.124.1.1 91833 2nxfA 322 4.747 2blnA 305 4.914 b.46.1.1,c.65.1.1 128734,128735 1xm7A 195 4.951 d.159.1.8 115473 1t3iA 420 4.979 c.67.1.3 106354 1u32A 293 5.279 d.159.1.3 107631 2bw0A 329 5.459 b.46.1.1,c.65.1.1 129303,129304 1vbkA 307 5.654 c.26.2.6,d.308.1.1 119957,119958 1fs5A 266 5.752 c.124.1.1 65044 1wyuA 438 5.776 c.67.1.7 121452 2gdjA 264 6.410 c.37.1.11 135018 1y89A 238 6.947 1vl1A 232 7.593 c.124.1.1 108707 1j8yF 297 7.674 a.24.13.1,c.37.1.10 62747,62748 1eg5A 384 8.123 c.67.1.3 34429 1fmtA 314 8.589 b.46.1.1,c.65.1.1 25758,34174 1uwcA 261 8.940 c.69.1.17 100101 1fjmA 330 9.132 d.159.1.3 42082 1s3iA 310 11.72 b.46.1.1,c.65.1.1 98435,98436 1jk7A 323 11.98 d.159.1.3 63144 2q8uA 336 13.17 2a22A 215 14.10 d.159.1.7 126025 2pfsA 150 14.48 1w24A 182 14.82 d.159.1.7 120579 2o2gA 223 15.40 2j0eA 266 16.39 2gwgA 350 16.62 c.1.9.15 135805 1zwxA 301 17.92 d.151.1.3 125752 2ax3A 502 20.10 c.72.1.4,c.104.1.1 127477,127478 2o0mA 345 20.52 1d7uA 433 21.63 c.67.1.4 34439 1v73A 342 21.78 2gnpA 266 21.94 1mjhA 162 22.02 c.26.2.4 31639 2dr1A 386 22.12 2gzmA 267 22.35 1jf9A 408 23.17 c.67.1.3 62931 1m32A 366 25.04 c.67.1.3 78508 1kmkA 406 25.28 c.67.1.3 68696 3ch7A 266 25.55 1s95A 333 26.34 d.159.1.3 105375 1y8cA 246 26.46 c.66.1.43 116563 1i5gA 144 27.21 c.47.1.10 61784 1o69A 394 27.27 c.67.1.4 92560 1jmvA 141 28.33 c.26.2.4 66897 1mdoA 393 28.52 c.67.1.4 79013 2dxnA 274 30.39 1jsxA 207 31.29 c.66.1.20 71846 2vlbA 251 31.74 1qz9A 416 32.89 c.67.1.3 96621 2jfuA 291 34.46 1af7A 274 35.61 a.58.1.1,c.66.1.8 17928,34203 1npyA 271 35.71 c.2.1.7,c.58.1.5 85995,85996 3caiA 406 36.18 1hd7A 318 36.27 d.151.1.1 41780 1meoA 209 36.72 c.65.1.1 79035 2qe6A 274 37.78 1iugA 352 39.26 c.67.1.3 90699 3cssA 267 39.28 1nnwA 252 39.81 d.159.1.5 80674 1escA 306 40.79 c.23.10.1 31334 2q09A 416 41.25 2e2oA 299 42.23 1ivnA 190 43.08 c.23.10.5 83719 1tq8A 163 44.14 c.26.2.4 107204 1zuaX 317 44.75 1xtpA 254 45.29 c.66.1.42 116031 1vp8A 201 48.97 c.49.1.2 113947 2e5fA 325 50.20 2i1qA 322 50.37 a.60.4.1,c.37.1.11 136984,136985 2hdyA 440 51.13 1vjoA 393 51.91 c.67.1.3 100827 1fyeA 229 52.27 c.23.16.4 31477 1st9A 143 53.67 c.47.1.10 98987 2a3nA 355 54.71 1e20A 209 56.81 c.34.1.1 31759 1pbtA 244 57.07 c.124.1.1 94416 2ggtA 164 58.45 c.47.1.10 135156 2fnuA 375 59.20 c.67.1.4 133831 2bkwA 385 61.38 c.67.1.3 128714 1c7gA 456 62.26 c.67.1.2 90415 1a4mA 349 62.47 c.1.9.1 29014 2hejA 323 63.65 1gt6A 269 63.99 c.69.1.17 76342 2okgA 255 64.03 1bu6O 501 65.38 c.55.1.4,c.55.1.4 33499,33500 1chdA 203 66.25 c.40.1.1 32478 1kpgA 287 67.07 c.66.1.18 68735 2po3A 424 67.75 2eq5A 228 68.52 2ri0A 234 69.07 2bjhA 260 69.16 1j96A 323 71.75 c.1.7.1 71616 1af7 274 72.28 1i60A 278 72.35 c.1.15.4 71118 2dumA 170 72.50 1b9hA 388 72.74 c.67.1.4 34488 2f9sA 151 73.50 c.47.1.10 133168 1cs1A 386 74.61 c.67.1.3 34399 1k07A 263 75.12 d.157.1.1 77218 2qv5A 261 75.61 1ur3M 319 75.89 c.1.7.1 99806 2gmsA 390 75.93 1cjcA 460 77.65 c.3.1.1,c.4.1.1 30319,30604 2qjcA 262 78.08 1hw6A 278 80.56 c.1.7.1 61296 2dgkA 452 81.05 1k1eA 180 81.59 c.108.1.5 67995 1mvlA 209 82.03 c.34.1.1 85146 2ac2A 309 83.90 1jztA 246 85.73 c.104.1.1 63319 2c0rA 362 86.64 c.67.1.4 129604 2ywrA 216 88.59 2df8A 325 89.23 1vid 221 89.72 3tglA 269 89.97 c.69.1.17 34733