# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2oq2A 261 1.38e-12 2goyA 275 5.73e-12 1surA 215 3.97e-11 c.26.2.2 31620 1sur 215 4.22e-11 1zunA 325 2.57e-10 c.26.2.2 125676 1ni5A 433 4.22e-06 b.153.1.2,d.229.1.1,c.26.2.5 111592,111593,80533 2dplA 308 4.88e-06 1wy5A 317 8.47e-06 c.26.2.5,d.229.1.1 121428,121429 1xngA 268 0.000153 c.26.2.1 122186 2hmaA 376 0.000509 1korA 400 0.000595 c.26.2.1,d.210.1.1 72824,72825 2pg3A 232 0.002196 1vl2A 421 0.002209 c.26.2.1,d.210.1.1 108708,108709 2e18A 257 0.002497 1kqpA 271 0.004155 c.26.2.1 72883 1ru8A 232 0.004901 c.26.2.1 97849 1k92A 455 0.005045 c.26.2.1,d.210.1.1 68325,68326 2c5sA 413 0.02651 c.26.2.6,d.308.1.1 129950,129951 1wxiA 275 0.03085 c.26.2.1 121400 1gpmA 525 0.3381 c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1m1zA 513 1.030 c.26.2.1,d.153.1.1 78457,78458 2d13A 227 1.271 c.26.2.1 131121 1wyuA 438 5.018 c.67.1.7 121452 1z7wA 322 5.538 c.79.1.1 124674 1y8cA 246 6.204 c.66.1.43 116563 1jqeA 292 6.328 c.66.1.19 71789 2hzgA 401 6.625 2okgA 255 6.982 2o0mA 345 7.549 1zuwA 272 8.855 2gzmA 267 10.91 1m32A 366 11.65 c.67.1.3 78508 1byrA 155 11.66 d.136.1.1 41450 1vb5A 276 11.84 c.124.1.5 113604 2pp3A 398 11.94 2pozA 392 12.20 1udcA 338 12.43 c.2.1.2 29785 3bkxA 275 12.69 1ct9A 553 12.95 c.26.2.1,d.153.1.1 31616,41834 2ovlA 371 13.59 2p0iA 456 14.66 2pqmA 343 14.85 1eluA 390 15.04 c.67.1.3 34434 2r5fA 264 15.26 2bw0A 329 16.93 b.46.1.1,c.65.1.1 129303,129304 1elqA 390 17.05 c.67.1.3 34436 1x19A 359 18.67 1iugA 352 18.71 c.67.1.3 90699 1j8mF 297 19.47 a.24.13.1,c.37.1.10 62742,62743 1v73A 342 19.57 2ip2A 334 19.70 2og9A 393 20.73 2i1qA 322 21.14 a.60.4.1,c.37.1.11 136984,136985 1s3eA 520 21.56 c.3.1.2,d.16.1.5 98426,98427 2px0A 296 21.80 2dwuA 276 22.03 1np7A 489 23.86 a.99.1.1,c.28.1.1 80677,80678 1y7lA 316 24.11 c.79.1.1 122695 1z45A 699 24.12 b.30.5.4,c.2.1.2 124427,124428 2h00A 254 26.63 c.66.1.54 135925 1sekA 378 27.03 e.1.1.1 42675 2cb0A 333 27.93 1vbkA 307 28.48 c.26.2.6,d.308.1.1 119957,119958 1vimA 200 29.15 c.80.1.3 100758 2b9wA 424 29.72 2fb9A 322 30.21 2q3bA 313 31.10 1jf8A 131 31.52 c.44.1.1 66621 1ve1A 304 31.58 c.79.1.1 120007 1x7dA 350 31.79 c.2.1.13 114927 2p5yA 311 33.49 1qydA 313 33.95 c.2.1.2 96583 1uarA 285 33.95 c.46.1.2,c.46.1.2 107762,107763 1yoeA 322 35.13 2e5fA 325 35.86 1f8rA 498 36.88 c.3.1.2,d.16.1.5 30410,37974 1qd1A 325 37.38 d.58.34.1,d.58.34.1 39493,39494 2gnpA 266 38.92 1lk5A 229 39.31 c.124.1.4,d.58.40.1 73960,73961 1u9iA 519 40.51 c.37.1.11,c.37.1.11 119637,119638 1sb8A 352 40.51 c.2.1.2 105410 1vmaA 306 40.55 a.24.13.1,c.37.1.10 108887,108888 2pceA 386 42.86 1tezA 474 43.46 a.99.1.1,c.28.1.1 112409,112410 1j5xA 342 45.44 c.80.1.1 71591 2z1mA 345 45.45 1m3sA 186 45.78 c.80.1.3 78573 1ve3A 227 46.52 c.66.1.43 120010 2d1sA 548 47.66 2eiyA 308 47.84 3bh0A 315 48.18 2jfuA 291 49.22 2hufA 393 49.25 1ec7A 446 50.47 c.1.11.2,d.54.1.1 29218,38862 2v7bA 529 50.92 3bn1A 373 51.05 2z08A 137 51.13 2gdqA 382 51.50 c.1.11.2,d.54.1.1 135020,135021 1nlfA 279 51.56 c.37.1.11 85850 1u4nA 310 51.93 c.69.1.2 113021 2r3sA 335 53.38 2o56A 407 53.45 1t3iA 420 53.95 c.67.1.3 106354 2zc8A 369 54.05 2ywrA 216 54.69 2pzmA 330 54.83 1qmgA 524 55.02 a.100.1.2,c.2.1.6 18785,30182 2j4dA 525 56.48 2r6jA 318 56.51 3b9gA 328 56.59 1fp2A 352 56.82 a.4.5.29,c.66.1.12 59941,59942 1moq 368 57.04 1jztA 246 57.25 c.104.1.1 63319 1kjqA 391 57.33 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1o69A 394 57.48 c.67.1.4 92560 3bxoA 239 58.73 1vlmA 219 58.94 c.66.1.41 108836 1xwwA 157 59.28 1qz9A 416 59.78 c.67.1.3 96621 2v9dA 343 60.12 2v03A 303 60.79 3mag 307 61.76 1reoA 486 61.79 c.3.1.2,d.16.1.5 97325,97326 2b9eA 303 61.95 c.66.1.38 128124 2c40A 312 62.77 1h2bA 359 62.79 b.35.1.2,c.2.1.1 90543,90544 2hlkA 255 63.22 2z9wA 392 63.35 1tzzA 392 64.87 c.1.11.2,d.54.1.1 112896,112897 2gmsA 390 64.98 1bupA 386 65.16 c.55.1.1,c.55.1.1 33377,33378 1h1dA 221 66.28 c.66.1.1 83452 2r6hA 290 66.45 1dl5A 317 66.72 c.66.1.7,d.197.1.1 64720,64721 1k4iA 233 67.75 d.115.1.2 72056 1b74A 254 67.96 c.78.2.1,c.78.2.1 35264,35265 1ls1A 295 70.03 a.24.13.1,c.37.1.10 78170,78171 1ooyA 481 70.19 c.124.1.3,c.124.1.2 93388,93389 1t5oA 351 70.81 c.124.1.5 106459 1zud1 251 71.29 1kyzA 365 71.44 a.4.5.29,c.66.1.12 73312,73313 1xtpA 254 72.27 c.66.1.42 116031 1rpnA 335 72.59 c.2.1.2 97708 1xvaA 292 72.62 c.66.1.5 34183 1y8qA 346 73.21 2og2A 359 74.33 1q8fA 313 74.34 c.70.1.1 96203 1c0eA 157 74.80 c.44.1.1 32638 3c9uA 342 75.09 2vlbA 251 75.31 1yuwA 554 76.50 b.130.1.1,c.55.1.1,c.55.1.1 124070,124071,124072 1i2cA 404 76.61 c.2.1.2 83666 2masA 314 77.63 c.70.1.1 34810 2pl5A 366 77.64 1l7dA 384 78.35 c.2.1.4,c.23.12.2 77774,77775 2ogeA 399 78.89 3b9qA 302 80.23 1s3iA 310 80.73 b.46.1.1,c.65.1.1 98435,98436 2pfsA 150 81.68 1of1A 376 82.64 c.37.1.1 103924 1o58A 303 82.92 c.79.1.1 92491 1w24A 182 84.08 d.159.1.7 120579 2ggsA 273 84.80 1ve9A 347 85.26 c.4.1.2,d.16.1.3 100571,100572 2g72A 289 85.61 c.66.1.15 134724 2yrxA 451 86.25 1d1qA 161 87.21 c.44.1.1 32642 1r0mA 375 87.55 c.1.11.2,d.54.1.1 104747,104748 1auiA 521 87.75 d.159.1.3 42085 2bkwA 385 88.26 c.67.1.3 128714 2z1uA 343 88.36 1jf9A 408 89.56 c.67.1.3 62931