Best Alignments for T0393

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2f1kA	9.4310e-13	2f1kA/T0393-2f1kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
2izzA	2.5068e-12	2izzA/T0393-2izzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yb4A	4.7207e-12	1yb4A/T0393-1yb4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pgdA	5.1967e-12	2pgdA/T0393-2pgdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2i76A	9.7538e-12	2i76A/T0393-2i76A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2graA	1.1832e-11	2graA/T0393-2graA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ahrA	2.0319e-11	2ahrA/T0393-2ahrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.10 c.2.1.6
1yqgA	2.8202e-11	1yqgA/T0393-1yqgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2h78A	3.5051e-11	2h78A/T0393-2h78A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2cvzA	5.7942e-11	2cvzA/T0393-2cvzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2g5cA	5.8125e-11	2g5cA/T0393-2g5cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
2p4qA	6.0322e-11	2p4qA/T0393-2p4qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vpdA	8.7093e-11	1vpdA/T0393-1vpdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2rcyA	1.9658e-10	2rcyA/T0393-2rcyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1np3A	3.3313e-10	1np3A/T0393-1np3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.2 c.2.1.6
3c24A	6.0027e-10	3c24A/T0393-3c24A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bg6	1.1676e-09	1bg6/T0393-1bg6-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1txgA	2.3634e-09	1txgA/T0393-1txgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.6 c.2.1.6
2pgd	6.3842e-09	2pgd/T0393-2pgd-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pv7A	3.7702e-08	2pv7A/T0393-2pv7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001