Best Alignments for T0393

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2izzA	1.3667e-11	2izzA/T0393-2izzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yb4A	1.2292e-10	1yb4A/T0393-1yb4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2graA	1.3013e-10	2graA/T0393-2graA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yqgA	2.6528e-10	1yqgA/T0393-1yqgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2p4qA	2.9412e-10	2p4qA/T0393-2p4qA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pgdA	4.0200e-10	2pgdA/T0393-2pgdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
1vpdA	4.7267e-10	1vpdA/T0393-1vpdA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2ahrA	9.1759e-10	2ahrA/T0393-2ahrA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.10 c.2.1.6
2rcyA	1.5728e-09	2rcyA/T0393-2rcyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1txgA	2.3960e-09	1txgA/T0393-1txgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.6 c.2.1.6
3c24A	3.0793e-09	3c24A/T0393-3c24A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1np3A	3.1792e-09	1np3A/T0393-1np3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.2 c.2.1.6
2cvzA	3.9876e-09	2cvzA/T0393-2cvzA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.1 c.2.1.6
2h78A	4.8003e-09	2h78A/T0393-2h78A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f1kA	5.4277e-09	2f1kA/T0393-2f1kA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
2g5cA	8.7014e-09	2g5cA/T0393-2g5cA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.12 c.2.1.6
1bg6A	1.7042e-08	1bg6A/T0393-1bg6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.5 c.2.1.6
2qytA	1.9376e-08	2qytA/T0393-2qytA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2i76A	3.0160e-08	2i76A/T0393-2i76A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dliA	4.7960e-08	1dliA/T0393-1dliA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.4 c.2.1.6 c.26.3.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001