# List of top-scoring protein chains for T0393.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 2.95e-07 a.100.1.1,c.2.1.6 113951,113952 3cumA 302 3.17e-07 2i9pA 319 6.19e-07 2gf2A 296 6.49e-07 2cvzA 289 1.42e-06 a.100.1.1,c.2.1.6 130890,130891 1yb4A 295 2.05e-06 2izzA 322 2.90e-06 2gerA 321 3.26e-06 2graA 277 3.31e-06 2p4qA 497 3.92e-06 2uyyA 316 4.00e-06 2rcyA 262 7.17e-06 1yqgA 263 7.74e-06 2iz1A 474 2.74e-05 2iypA 473 2.84e-05 2pgdA 482 2.87e-05 a.100.1.1,c.2.1.6 18778,30190 2iyoA 472 2.97e-05 2ahrA 259 4.05e-05 a.100.1.10,c.2.1.6 126775,126776 1pgjA 478 7.54e-05 a.100.1.1,c.2.1.6 18783,30195 2q3eA 467 0.000157 2o3jA 481 0.000196 1mv8A 436 0.000464 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1x0vA 354 0.001593 1z82A 335 0.001951 1wpqA 349 0.002106 2f1kA 279 0.002245 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 0.003626 a.100.1.12,c.2.1.6 134646,134647 1dliA 402 0.005057 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1evyA 366 0.005472 a.100.1.6,c.2.1.6 18811,30215 1dljA 402 0.005612 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2pv7A 298 0.007533 2plaA 349 0.00998 1txgA 335 0.01902 a.100.1.6,c.2.1.6 112775,112776 1yj8A 375 0.03068 1np3A 338 0.04008 a.100.1.2,c.2.1.6 85946,85947 2ew2A 316 0.05460 2i76A 276 0.05606 1zejA 293 0.06674 1i36A 264 0.07220 a.100.1.8,c.2.1.6 71108,71109 1jayA 212 0.09649 c.2.1.6 66478 2ofpA 320 0.1011 a.100.1.7,c.2.1.6 139052,139053 3c24A 286 0.1235 1ks9A 291 0.1242 a.100.1.7,c.2.1.6 68857,68858 1yonA 303 0.1279 a.100.1.7,c.2.1.6 123780,123781 1bg6A 359 0.2237 a.100.1.5,c.2.1.6 18810,30214 1il0A 302 0.2360 a.100.1.3,c.2.1.6 66189,66190 1f17A 310 0.2620 a.100.1.3,c.2.1.6 18797,30201 1f0yA 302 0.2694 a.100.1.3,c.2.1.6 18793,30197 1yrlA 491 0.2718 1lsjA 302 0.2740 a.100.1.3,c.2.1.6 91116,91117 1m75A 302 0.2790 a.100.1.3,c.2.1.6 91212,91213 3hdhA 302 0.2815 a.100.1.3,c.2.1.6 18805,30209 1lsoA 302 0.2970 a.100.1.3,c.2.1.6 91120,91121 3hadA 308 0.3063 a.100.1.3,c.2.1.6 18799,30203 2hdhA 293 0.3406 a.100.1.3,c.2.1.6 18795,30199 1m76A 302 0.4784 a.100.1.3,c.2.1.6 91216,91217 2rafA 209 0.5460 2b0jA 358 0.6306 a.100.1.11,c.2.1.6 127639,127640 2dpoA 319 0.6520 1zcjA 463 0.8389 2dbqA 334 1.214 1wwkA 307 1.333 2qytA 317 2.567 2hmvA 144 2.574 c.2.1.9 136615 1lsuA 147 2.597 c.2.1.9 74250 1j4aA 333 3.348 c.2.1.4,c.23.12.1 71502,71503 2v6bA 304 3.576 2d5cA 263 3.667 2q49A 359 3.700 c.2.1.3,d.81.1.1 139831,139832 1j49A 333 3.818 c.2.1.4,c.23.12.1 71498,71499 2q50A 328 3.951 2gcgA 330 3.955 1qp8A 303 4.122 c.2.1.4,c.23.12.1 30092,31352 2pi1A 334 4.509 1ff9A 450 5.119 c.2.1.3,d.81.1.2 30039,39954 2i99A 312 5.279 2hk8A 269 5.401 2hk9A 275 5.435 1ygyA 529 5.580 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1hyhA 309 5.609 c.2.1.5,d.162.1.1 30150,42117 1a5zA 319 5.624 c.2.1.5,d.162.1.1 30181,42148 2rirA 300 5.692 1lldA 319 5.890 c.2.1.5,d.162.1.1 30177,42144 2d0iA 333 6.027 1dxyA 333 6.041 c.2.1.4,c.23.12.1 30094,31354 1wdkA 715 6.198 a.100.1.3,a.100.1.3,c.2.1.6,c.14.1.3 109250,109251,109252,109253 1qmgA 524 6.883 a.100.1.2,c.2.1.6 18785,30182 2cvoA 366 7.173 c.2.1.3,d.81.1.1 130877,130878 1vknA 351 7.486 c.2.1.3,d.81.1.1 108676,108677 1guzA 310 7.526 c.2.1.5,d.162.1.1 65586,65587 1y81A 138 7.650 c.2.1.8 122731 1gv1A 310 7.671 c.2.1.5,d.162.1.1 65598,65599 1gpjA 404 8.229 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2dldA 337 8.713 c.2.1.4,c.23.12.1 30099,31359 1v9lA 421 9.176 c.2.1.7,c.58.1.1 113583,113584 1jw9B 249 9.340 c.111.1.1 67377 2axqA 467 9.412 1hkuA 358 9.591 c.2.1.4,c.23.12.1 83557,83558 2eklA 313 9.733 1xdwA 331 10.09 2vhxA 377 10.81 2vojA 371 10.89 2vhvA 377 11.32 1pjcA 361 11.61 c.2.1.4,c.23.12.2 30101,31361 2dc1A 236 11.65 1mx3A 347 12.08 c.2.1.4,c.23.12.1 79638,79639 1ur5A 309 12.30 c.2.1.5,d.162.1.1 99807,99808 2o4cA 380 12.55 3bioA 304 12.82 1uxkA 309 13.36 c.2.1.5,d.162.1.1 108116,108117 1uxjA 309 13.38 c.2.1.5,d.162.1.1 108112,108113 1uxgA 309 13.68 c.2.1.5,d.162.1.1 108100,108101 1x7dA 350 13.70 c.2.1.13 114927 1zud1 251 13.74 1c0pA 363 13.89 c.4.1.2,d.16.1.3 30647,37934 1zfnA 253 13.94 1gv0A 310 14.65 c.2.1.5,d.162.1.1 65594,65595 2eezA 369 15.78 2p9cA 410 16.92 c.2.1.4,c.23.12.1,d.58.18.1 139556,139557,139558 1ybaA 410 17.94 c.2.1.4,c.23.12.1,d.58.18.1 122872,122873,122874 1psdA 409 17.95 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2ho3A 325 18.16 2p9gA 410 18.61 c.2.1.4,c.23.12.1,d.58.18.1 139574,139575,139576 2omeA 336 19.16 1qycA 308 19.20 c.2.1.2 96581 2ep5A 350 20.35 1zh8A 340 20.40 c.2.1.3,d.81.1.5 125077,125078 1tltA 319 20.90 c.2.1.3,d.81.1.5 107135,107136 1lssA 140 21.32 c.2.1.9 74246 2v7pA 310 21.51 2g1uA 155 22.02 2hjrA 328 22.77 2a92A 321 25.67 1ldbA 317 26.42 c.2.1.5,d.162.1.1 30174,42141 1ldnA 316 26.46 c.2.1.5,d.162.1.1 30166,42133 1f06A 320 28.13 c.2.1.3,d.81.1.3 59556,59557 1wamA 384 28.24 c.4.1.3,d.16.1.7 120811,120812 2frmA 321 28.35 1cf2O 337 28.39 c.2.1.3,d.81.1.1 29994,39909 2ewdA 317 28.67 2bi7A 384 28.87 2cmdA 312 29.05 c.2.1.5,d.162.1.1 30135,42102 2r2gA 318 29.13 2r6jA 318 29.63 1vllA 334 29.95 c.2.1.13 108834 1omoA 322 29.97 c.2.1.13 104017 1k3tA 359 32.36 c.2.1.3,d.81.1.1 72022,72023 1ggaA 358 32.79 c.2.1.3,d.81.1.1 30002,39917 3c1aA 315 36.54 2pwzA 312 37.20 c.2.1.5,d.162.1.1 139766,139767 1ys4A 354 37.28 2cukA 311 37.46 2cf5A 357 39.31 2ixaA 444 39.64 1ib6A 312 40.05 c.2.1.5,d.162.1.1 62146,62147 1lpfA 477 40.20 c.3.1.5,c.3.1.5,d.87.1.1 30569,30570,40206 2ejwA 332 42.67 2g82A 331 43.03 c.2.1.3,d.81.1.1 134746,134747 1nhpA 447 43.36 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 9ldtA 331 43.53 c.2.1.5,d.162.1.1 30154,42121 2i6tA 303 44.31 1nhqA 447 45.14 c.3.1.5,c.3.1.5,d.87.1.1 30551,30552,40197 1npxA 447 45.33 c.3.1.5,c.3.1.5,d.87.1.1 30557,30558,40200 2vdcG 456 45.69 1nhsA 447 46.26 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1nhrA 447 46.95 c.3.1.5,c.3.1.5,d.87.1.1 30553,30554,40198 1j5pA 253 47.43 d.81.1.3,c.2.1.3 71577,83092 1llcA 325 48.54 c.2.1.5,d.162.1.1 30176,42143 1y6jA 318 50.20 c.2.1.5,d.162.1.1 116507,116508 1gdhA 320 51.04 c.2.1.4,c.23.12.1 30095,31355 2q1sA 377 53.18 2eggA 297 55.41 1h2hA 241 57.50 d.81.1.3,c.2.1.3 70861,83058 2g17A 337 58.38 c.2.1.3,d.81.1.1 134512,134513 1f8wA 447 58.41 c.3.1.5,c.3.1.5,d.87.1.1 30561,30562,40202 2nloA 302 59.62 1i0zA 333 59.87 c.2.1.5,d.162.1.1 61495,61496 1sc6A 404 59.92 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1t2fA 333 59.94 c.2.1.5,d.162.1.1 99088,99089 5ldhA 333 62.43 c.2.1.5,d.162.1.1 30158,42125 1xhcA 367 63.13 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2ldxA 331 63.20 c.2.1.5,d.162.1.1 30159,42126 1pzgA 331 64.42 c.2.1.5,d.162.1.1 95425,95426 1hyeA 313 64.68 c.2.1.5,d.162.1.1 61400,61401 3ceaA 346 64.78 1nvtA 287 65.33 c.2.1.7,c.58.1.5 86270,86271 2q4eA 362 68.28 3cgbA 480 69.05 2fssA 365 69.96 2v65A 331 69.99 1b7gO 340 70.86 c.2.1.3,d.81.1.1 29992,39907 3ladA 476 73.64 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1y1pA 342 74.62 c.2.1.2 122550 1b26A 416 75.35 c.2.1.7,c.58.1.1 30232,33880 1nvmB 312 75.75 c.2.1.3,d.81.1.1 86251,86252 2j6iA 364 75.83 2gz1A 366 75.85 c.2.1.3,d.81.1.1 135887,135888 1t2dA 322 79.18 c.2.1.5,d.162.1.1 99084,99085 1p3dA 475 79.23 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1vl6A 388 80.73 c.2.1.7,c.58.1.3 108724,108725 1ybvA 283 80.78 c.2.1.2 29948 1g0oA 283 80.87 c.2.1.2 60181 2o7sA 523 81.23 1xivA 323 81.35 c.2.1.5,d.162.1.1 122018,122019 2a94A 321 81.39 c.2.1.5,d.162.1.1 126423,126424 2q1wA 333 82.09 2haeA 386 82.17 c.2.1.7,c.58.1.3 136278,136279 1bxgB 356 82.91 c.2.1.7,c.58.1.1 30277,33925 1c1dB 355 82.94 c.2.1.7,c.58.1.1 30271,33919 2hunA 336 82.97 1bxgA 356 82.97 c.2.1.7,c.58.1.1 30276,33924 1bw9B 356 83.00 c.2.1.7,c.58.1.1 30275,33923 1c1xB 355 83.03 c.2.1.7,c.58.1.1 30273,33921 1bw9A 356 83.03 c.2.1.7,c.58.1.1 30274,33922 1c1dA 355 83.06 c.2.1.7,c.58.1.1 30270,33918 1c1xA 355 83.06 c.2.1.7,c.58.1.1 30272,33920 1nytA 271 83.15 c.2.1.7,c.58.1.5 86417,86418 2tmgA 415 83.52 c.2.1.7,c.58.1.1 30238,33886 1vl8A 267 83.78 c.2.1.2 108733 2h63A 292 84.15 1b3bA 415 85.82 c.2.1.7,c.58.1.1 30244,33892 1i10A 331 86.01 c.2.1.5,d.162.1.1 61499,61500 2d59A 144 87.70 c.2.1.8 131266 1t2eA 322 88.50 c.2.1.5,d.162.1.1 99086,99087