# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.001410 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.002021 2ahrA 259 0.002207 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 0.002769 1yb4A 295 0.002932 2cvzA 289 0.003462 a.100.1.1,c.2.1.6 130890,130891 2h78A 302 0.003541 2graA 277 0.003935 2p4qA 497 0.004028 2rcyA 262 0.005173 2pgd 482 0.005178 2pgdA 482 0.005301 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.005916 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.01057 2dpoA 319 0.01101 1mv8A 436 0.01158 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 3c24A 286 0.01271 2g5cA 281 0.01396 a.100.1.12,c.2.1.6 134646,134647 2pv7A 298 0.01627 2o3jA 481 0.01769 1np3A 338 0.01915 a.100.1.2,c.2.1.6 85946,85947 1qmgA 524 0.02212 a.100.1.2,c.2.1.6 18785,30182 2i76A 276 0.02396 1bg6A 359 0.02433 a.100.1.5,c.2.1.6 18810,30214 1evyA 366 0.02674 a.100.1.6,c.2.1.6 18811,30215 1ks9A 291 0.02756 a.100.1.7,c.2.1.6 68857,68858 1i36A 264 0.02931 a.100.1.8,c.2.1.6 71108,71109 1yrlA 491 0.03039 1z82A 335 0.03746 1f0yA 302 0.04236 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 0.04798 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1bg6 359 0.05220 1x0vA 354 0.05318 1txgA 335 0.05892 a.100.1.6,c.2.1.6 112775,112776 2qytA 317 0.06340 1zcjA 463 0.07921 1dljA 402 0.1050 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zejA 293 0.1110 1jayA 212 0.1914 c.2.1.6 66478 1qv9A 283 0.5159 c.127.1.1 96356 1vjtA 483 0.9169 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 1.390 c.2.1.5,d.162.1.2 86760,86761 2b0jA 358 1.636 a.100.1.11,c.2.1.6 127639,127640 2axqA 467 1.764 1lldA 319 1.835 c.2.1.5,d.162.1.1 30177,42144 1guzA 310 2.063 c.2.1.5,d.162.1.1 65586,65587 1hyhA 309 2.108 c.2.1.5,d.162.1.1 30150,42117 1t2dA 322 2.184 c.2.1.5,d.162.1.1 99084,99085 1pzgA 331 2.302 c.2.1.5,d.162.1.1 95425,95426 1s6yA 450 2.361 c.2.1.5,d.162.1.2 105314,105315 1ez4A 318 2.694 c.2.1.5,d.162.1.1 64917,64918 2nvwA 479 2.949 c.2.1.3,d.81.1.5 138665,138666 2ewdA 317 2.952 1f06A 320 3.119 c.2.1.3,d.81.1.3 59556,59557 1ygyA 529 3.367 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1gdhA 320 3.614 c.2.1.4,c.23.12.1 30095,31355 2i6tA 303 3.787 1u8xX 472 3.795 c.2.1.5,d.162.1.2 107741,107742 2j6iA 364 3.802 1li4A 432 3.855 c.2.1.4,c.23.12.3 84616,84617 6ldhA 329 3.906 c.2.1.5,d.162.1.1 30161,42128 2v7pA 310 3.925 1x7dA 350 4.048 c.2.1.13 114927 1up7A 417 4.149 c.2.1.5,d.162.1.2 113374,113375 2fssA 365 4.173 1a5zA 319 4.223 c.2.1.5,d.162.1.1 30181,42148 2nacA 393 4.351 c.2.1.4,c.23.12.1 30088,31348 1omoA 322 4.813 c.2.1.13 104017 1uxjA 309 4.984 c.2.1.5,d.162.1.1 108112,108113 3ceaA 346 5.049 1wwkA 307 5.094 2o4cA 380 5.218 1mx3A 347 5.223 c.2.1.4,c.23.12.1 79638,79639 1h6dA 433 5.227 c.2.1.3,d.81.1.5 65656,65657 2p2sA 336 5.272 2dbqA 334 5.283 2o4uX 334 5.343 2q4eA 362 5.381 1j4aA 333 5.464 c.2.1.4,c.23.12.1 71502,71503 1lssA 140 5.659 c.2.1.9 74246 1v8bA 479 5.833 c.2.1.4,c.23.12.3 113564,113565 2eklA 313 6.068 2dc1A 236 6.092 2ho3A 325 6.236 1xdwA 331 6.422 1tltA 319 6.470 c.2.1.3,d.81.1.5 107135,107136 2pi1A 334 6.588 1dxy 333 6.727 2gcgA 330 6.745 3bioA 304 6.824 3c1aA 315 6.934 1gpjA 404 7.080 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1ff9A 450 7.109 c.2.1.3,d.81.1.2 30039,39954 1xeaA 323 7.174 c.2.1.3,d.81.1.5 109572,109573 1dxyA 333 7.269 c.2.1.4,c.23.12.1 30094,31354 2cukA 311 7.304 2eggA 297 7.584 1nvmB 312 8.200 c.2.1.3,d.81.1.1 86251,86252 2hk9A 275 8.369 1rydA 387 8.426 c.2.1.3,d.81.1.5 118801,118802 1drw 273 8.433 1drwA 273 8.691 c.2.1.3,d.81.1.3 30057,39972 1zh8A 340 9.072 c.2.1.3,d.81.1.5 125077,125078 2hjsA 340 9.134 c.2.1.3,d.81.1.1 136547,136548 2glxA 332 9.714 2g76A 335 10.27 2d0iA 333 10.73 2d5cA 263 10.93 1lsuA 147 11.86 c.2.1.9 74250 1sc6A 404 11.98 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1qp8A 303 12.29 c.2.1.4,c.23.12.1 30092,31352 1pjcA 361 12.72 c.2.1.4,c.23.12.2 30101,31361 2g17A 337 13.15 c.2.1.3,d.81.1.1 134512,134513 1vknA 351 13.29 c.2.1.3,d.81.1.1 108676,108677 2ixaA 444 13.42 2r00A 336 13.67 2r6jA 318 14.26 1p77A 272 14.63 c.2.1.7,c.58.1.5 94214,94215 2ejwA 332 15.03 1nytA 271 15.17 c.2.1.7,c.58.1.5 86417,86418 2ph5A 480 16.16 1o6zA 303 16.58 c.2.1.5,d.162.1.1 81107,81108 2gz1A 366 16.81 c.2.1.3,d.81.1.1 135887,135888 2nloA 302 17.38 2hmvA 144 17.41 c.2.1.9 136615 2vhxA 377 18.06 1nvtA 287 18.52 c.2.1.7,c.58.1.5 86270,86271 1x13A 401 19.54 1lehA 364 20.47 c.2.1.7,c.58.1.1 30268,33916 2cmd 312 20.80 1ys4A 354 21.05 2q49A 359 21.52 c.2.1.3,d.81.1.1 139831,139832 1j5pA 253 22.16 d.81.1.3,c.2.1.3 71577,83092 1yovA 537 22.61 c.111.1.2 123785 2cmdA 312 22.85 c.2.1.5,d.162.1.1 30135,42102 1npyA 271 23.55 c.2.1.7,c.58.1.5 85995,85996 2vojA 371 23.91 1l7dA 384 24.05 c.2.1.4,c.23.12.2 77774,77775 2nqtA 352 24.82 1xgkA 352 25.30 c.2.1.2 115286 1y81A 138 25.32 c.2.1.8 122731 1mldA 314 27.16 c.2.1.5,d.162.1.1 30122,42089 1id1A 153 28.50 c.2.1.9 62286 1yqdA 366 28.54 2g1uA 155 28.62 2aefA 234 29.37 1y1pA 342 30.28 c.2.1.2 122550 1lc0A 294 31.04 c.2.1.3,d.81.1.4 73823,73824 2c29D 337 31.19 1vi2A 300 31.35 c.2.1.7,c.58.1.5 100726,100727 2d59A 144 31.90 c.2.1.8 131266 3c85A 183 33.09 2gn4A 344 34.08 2fk8A 318 34.27 c.66.1.18 133648 1luaA 287 34.49 c.2.1.7,c.58.1.4 78216,78217 2cf5A 357 35.06 2gasA 307 38.08 1hdoA 206 39.08 c.2.1.2 60965 1iukA 140 39.11 c.2.1.8 83712 2exxA 306 41.13 2pk3A 321 41.37 1lluA 342 41.50 b.35.1.2,c.2.1.1 91064,91065 1sb8A 352 41.55 c.2.1.2 105410 2czcA 334 41.93 d.81.1.1 131044 1uufA 369 42.80 b.35.1.2,c.2.1.1 100006,100007 2a35A 215 44.45 c.2.1.2 126072 3cc8A 230 45.00 1b7gO 340 45.11 c.2.1.3,d.81.1.1 29992,39907 2bllA 345 45.83 c.2.1.2 128733 1ebfA 358 46.41 c.2.1.3,d.81.1.2 30033,39948 1y7tA 327 48.43 c.2.1.5,d.162.1.1 122718,122719 2b69A 343 49.08 c.2.1.2 127974 2p4hX 322 49.13 2pzmA 330 50.16 1oc2A 348 51.08 c.2.1.2 92765 2o7sA 523 53.44 2ozpA 345 54.91 1q7gA 359 57.67 c.2.1.3,d.81.1.2 96038,96039 1xu9A 286 58.82 c.2.1.2 116052 1c1dA 355 59.49 c.2.1.7,c.58.1.1 30270,33918 1fl2A 310 60.00 c.3.1.5,c.3.1.5 59869,59870 1hyeA 313 60.89 c.2.1.5,d.162.1.1 61400,61401 1rkxA 357 62.01 c.2.1.2 97631 2bkaA 242 62.34 c.2.1.2 128666 1z7bA 358 62.50 c.2.1.2 124599 1y8qA 346 63.01 1xg5A 279 63.30 c.2.1.2 115277 1i2cA 404 64.26 c.2.1.2 83666 1yxmA 303 67.60 c.2.1.2 124192 2z1mA 345 69.81 1t2aA 375 71.70 c.2.1.2 99078 3c8mA 331 72.15 1kyqA 274 72.40 c.2.1.11,e.37.1.1 73281,73282 1ve3A 227 72.68 c.66.1.43 120010 1l1eA 287 74.91 c.66.1.18 73454 1z45A 699 75.06 b.30.5.4,c.2.1.2 124427,124428 1bdmA 327 75.11 c.2.1.5,d.162.1.1 30137,42104 1t4bA 367 75.27 c.2.1.3,d.81.1.1 106406,106407 2gdzA 267 76.20 c.2.1.2 135043 1wmaA 276 77.37 c.2.1.2 121042 1ri5A 298 79.75 c.66.1.34 97502 1jw9B 249 82.81 c.111.1.1 67377 1nhsA 447 85.60 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1nhpA 447 85.61 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2yqzA 263 87.51 2cdcA 366 89.50 1xvaA 292 89.64 c.66.1.5 34183 2hcyA 347 89.88