# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000108 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000150 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000154 1yqgA 263 0.000254 1yb4A 295 0.000272 2graA 277 0.000331 2cvzA 289 0.000332 a.100.1.1,c.2.1.6 130890,130891 2rcyA 262 0.000373 2h78A 302 0.000374 2p4qA 497 0.000397 2pgd 482 0.000451 2pgdA 482 0.000478 a.100.1.1,c.2.1.6 18778,30190 1mv8A 436 0.001287 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2f1kA 279 0.001293 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.001759 2o3jA 481 0.002070 2dpoA 319 0.002176 2g5cA 281 0.002242 a.100.1.12,c.2.1.6 134646,134647 2i76A 276 0.002337 2ew2A 316 0.002661 1np3A 338 0.002886 a.100.1.2,c.2.1.6 85946,85947 1qmgA 524 0.003170 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 0.003258 1bg6A 359 0.004080 a.100.1.5,c.2.1.6 18810,30214 1yrlA 491 0.005216 1evyA 366 0.005712 a.100.1.6,c.2.1.6 18811,30215 1i36A 264 0.006507 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 0.007246 a.100.1.7,c.2.1.6 68857,68858 1z82A 335 0.007885 1dliA 402 0.008756 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1f0yA 302 0.009025 a.100.1.3,c.2.1.6 18793,30197 1bg6 359 0.009225 1x0vA 354 0.01231 1dljA 402 0.01264 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1txgA 335 0.01954 a.100.1.6,c.2.1.6 112775,112776 1zcjA 463 0.02614 1zejA 293 0.02959 2qytA 317 0.03303 1jayA 212 0.03373 c.2.1.6 66478 1qv9A 283 0.2645 c.127.1.1 96356 2axqA 467 0.4933 1vjtA 483 0.4957 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 0.6574 c.2.1.5,d.162.1.2 86760,86761 2b0jA 358 0.999 a.100.1.11,c.2.1.6 127639,127640 1s6yA 450 1.110 c.2.1.5,d.162.1.2 105314,105315 2nvwA 479 1.175 c.2.1.3,d.81.1.5 138665,138666 1guzA 310 1.240 c.2.1.5,d.162.1.1 65586,65587 1hyhA 309 1.467 c.2.1.5,d.162.1.1 30150,42117 2ho3A 325 1.468 2q4eA 362 1.489 2nacA 393 1.544 c.2.1.4,c.23.12.1 30088,31348 2o4uX 334 1.609 1pzgA 331 1.619 c.2.1.5,d.162.1.1 95425,95426 2p2sA 336 1.652 1gdhA 320 1.675 c.2.1.4,c.23.12.1 30095,31355 1t2dA 322 1.728 c.2.1.5,d.162.1.1 99084,99085 1f06A 320 1.741 c.2.1.3,d.81.1.3 59556,59557 2dc1A 236 1.776 1ygyA 529 1.846 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1xeaA 323 1.881 c.2.1.3,d.81.1.5 109572,109573 1tltA 319 1.889 c.2.1.3,d.81.1.5 107135,107136 2fssA 365 1.992 1up7A 417 2.074 c.2.1.5,d.162.1.2 113374,113375 1mx3A 347 2.083 c.2.1.4,c.23.12.1 79638,79639 2j6iA 364 2.097 3ceaA 346 2.126 1u8xX 472 2.194 c.2.1.5,d.162.1.2 107741,107742 1ez4A 318 2.291 c.2.1.5,d.162.1.1 64917,64918 2glxA 332 2.464 1h6dA 433 2.473 c.2.1.3,d.81.1.5 65656,65657 1wwkA 307 2.549 1v8bA 479 2.607 c.2.1.4,c.23.12.3 113564,113565 1lssA 140 2.616 c.2.1.9 74246 2dbqA 334 2.659 1j4aA 333 2.687 c.2.1.4,c.23.12.1 71502,71503 1gpjA 404 2.702 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1li4A 432 2.770 c.2.1.4,c.23.12.3 84616,84617 3c1aA 315 2.808 1x7dA 350 2.828 c.2.1.13 114927 1lldA 319 2.844 c.2.1.5,d.162.1.1 30177,42144 2ewdA 317 3.076 1xdwA 331 3.150 1drw 273 3.317 1rydA 387 3.370 c.2.1.3,d.81.1.5 118801,118802 2v7pA 310 3.376 2i6tA 303 3.443 2o4cA 380 3.454 6ldhA 329 3.500 c.2.1.5,d.162.1.1 30161,42128 1dxy 333 3.556 2eklA 313 3.663 2gcgA 330 3.740 1drwA 273 3.785 c.2.1.3,d.81.1.3 30057,39972 1dxyA 333 3.788 c.2.1.4,c.23.12.1 30094,31354 1zh8A 340 3.791 c.2.1.3,d.81.1.5 125077,125078 3bioA 304 3.880 1sc6A 404 3.934 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1a5zA 319 4.704 c.2.1.5,d.162.1.1 30181,42148 1uxjA 309 4.881 c.2.1.5,d.162.1.1 108112,108113 1ff9A 450 4.903 c.2.1.3,d.81.1.2 30039,39954 2pi1A 334 4.991 2g76A 335 5.034 1omoA 322 5.073 c.2.1.13 104017 2hk9A 275 5.167 1lsuA 147 5.442 c.2.1.9 74250 2cukA 311 5.638 2ixaA 444 5.771 1lehA 364 6.058 c.2.1.7,c.58.1.1 30268,33916 1nvmB 312 6.088 c.2.1.3,d.81.1.1 86251,86252 2d0iA 333 6.279 1pjcA 361 6.415 c.2.1.4,c.23.12.2 30101,31361 1qp8A 303 6.954 c.2.1.4,c.23.12.1 30092,31352 2eggA 297 7.031 2d5cA 263 7.172 1y81A 138 8.127 c.2.1.8 122731 2g17A 337 8.129 c.2.1.3,d.81.1.1 134512,134513 2hmvA 144 8.199 c.2.1.9 136615 2hjsA 340 8.355 c.2.1.3,d.81.1.1 136547,136548 2nloA 302 8.572 2vhxA 377 8.923 2g1uA 155 9.357 1vknA 351 9.398 c.2.1.3,d.81.1.1 108676,108677 1p77A 272 9.937 c.2.1.7,c.58.1.5 94214,94215 2aefA 234 11.21 2ejwA 332 12.61 3c85A 183 13.47 2r6jA 318 13.48 2d59A 144 13.51 c.2.1.8 131266 1lc0A 294 13.87 c.2.1.3,d.81.1.4 73823,73824 1nytA 271 14.48 c.2.1.7,c.58.1.5 86417,86418 1iukA 140 14.83 c.2.1.8 83712 2vojA 371 15.55 1nvtA 287 16.11 c.2.1.7,c.58.1.5 86270,86271 1x13A 401 16.78 2fk8A 318 17.39 c.66.1.18 133648 1npyA 271 17.53 c.2.1.7,c.58.1.5 85995,85996 1yqdA 366 17.69 1j5pA 253 18.12 d.81.1.3,c.2.1.3 71577,83092 1id1A 153 18.25 c.2.1.9 62286 2q49A 359 18.31 c.2.1.3,d.81.1.1 139831,139832 2cf5A 357 18.56 1lluA 342 19.61 b.35.1.2,c.2.1.1 91064,91065 2r00A 336 19.99 1oi7A 288 20.24 c.2.1.8,c.23.4.1 87049,87050 2cmd 312 20.52 2o7sA 523 20.59 1l7dA 384 21.60 c.2.1.4,c.23.12.2 77774,77775 1o6zA 303 21.89 c.2.1.5,d.162.1.1 81107,81108 1vi2A 300 22.00 c.2.1.7,c.58.1.5 100726,100727 1luaA 287 23.23 c.2.1.7,c.58.1.4 78216,78217 1sb8A 352 23.59 c.2.1.2 105410 2cmdA 312 24.04 c.2.1.5,d.162.1.1 30135,42102 1xgkA 352 26.01 c.2.1.2 115286 1y1pA 342 26.05 c.2.1.2 122550 1hdoA 206 27.80 c.2.1.2 60965 2bllA 345 27.89 c.2.1.2 128733 1c1dA 355 28.15 c.2.1.7,c.58.1.1 30270,33918 2gasA 307 28.47 1uufA 369 28.55 b.35.1.2,c.2.1.1 100006,100007 1mldA 314 28.98 c.2.1.5,d.162.1.1 30122,42089 2c29D 337 29.60 2gz1A 366 29.92 c.2.1.3,d.81.1.1 135887,135888 1ys4A 354 30.74 2nqtA 352 31.25 2ph5A 480 31.97 2pzmA 330 32.59 2yv1A 294 33.01 3c8mA 331 33.01 2b69A 343 33.05 c.2.1.2 127974 2exxA 306 34.33 1t4bA 367 34.54 c.2.1.3,d.81.1.1 106406,106407 1z7bA 358 35.08 c.2.1.2 124599 3cc8A 230 35.15 2gn4A 344 35.56 1vj0A 380 37.84 b.35.1.2,c.2.1.1 100786,100787 1yovA 537 37.88 c.111.1.2 123785 1q7gA 359 39.56 c.2.1.3,d.81.1.2 96038,96039 1b7gO 340 40.15 c.2.1.3,d.81.1.1 29992,39907 2pk3A 321 40.50 2gptA 523 40.57 1ebfA 358 40.85 c.2.1.3,d.81.1.2 30033,39948 4uagA 437 41.03 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2gdzA 267 41.17 c.2.1.2 135043 2yqzA 263 43.57 2o57A 297 43.59 1nhsA 447 44.17 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1i2cA 404 44.82 c.2.1.2 83666 1nhpA 447 45.18 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2z1mA 345 45.53 1z45A 699 45.93 b.30.5.4,c.2.1.2 124427,124428 1kpgA 287 46.22 c.66.1.18 68735 1yxmA 303 46.23 c.2.1.2 124192 1oc2A 348 47.52 c.2.1.2 92765 1l1eA 287 48.49 c.66.1.18 73454 1wvgA 359 48.74 c.2.1.2 121339 2czcA 334 49.16 d.81.1.1 131044 2hcyA 347 49.73 1kyqA 274 52.86 c.2.1.11,e.37.1.1 73281,73282 2j3hA 345 53.73 1fl2A 310 54.49 c.3.1.5,c.3.1.5 59869,59870 1p0fA 373 54.74 b.35.1.2,c.2.1.1 87642,87643 1q1rA 431 55.09 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1rkxA 357 55.87 c.2.1.2 97631 1xu9A 286 56.43 c.2.1.2 116052 1ri5A 298 56.45 c.66.1.34 97502 2yyyA 343 57.23 1f8fA 371 57.58 b.35.1.2,c.2.1.1 83246,83247 1xg5A 279 58.02 c.2.1.2 115277 1duvG 333 58.69 c.78.1.1,c.78.1.1 35228,35229 3ckkA 235 58.96 2bkaA 242 59.09 c.2.1.2 128666 1jw9B 249 60.57 c.111.1.1 67377 1t2aA 375 61.56 c.2.1.2 99078 1ve3A 227 62.31 c.66.1.43 120010 1y7tA 327 62.46 c.2.1.5,d.162.1.1 122718,122719 2cduA 452 62.79 1yzhA 214 63.92 c.66.1.53 124277 2dt5A 211 64.35 a.4.5.38,c.2.1.12 131708,131709 1xtpA 254 65.35 c.66.1.42 116031 1eq2A 310 66.09 c.2.1.2 29814 2ozpA 345 66.25 2gqwA 408 66.39 2eihA 343 67.14 2dm6A 333 68.06 b.35.1.2,c.2.1.1 131567,131568 2blnA 305 68.39 b.46.1.1,c.65.1.1 128734,128735 2a35A 215 68.59 c.2.1.2 126072 1w4xA 542 71.21 c.3.1.5,c.3.1.5 109171,109172 1vbjA 281 71.58 2nxcA 254 71.84 c.66.1.39 138739 1gteA 1025 73.68 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2zbwA 335 74.51 1n8kA 374 74.98 b.35.1.2,c.2.1.1 80298,80299 2p5yA 311 75.50 1xcbA 211 77.54 a.4.5.38,c.2.1.12 109552,109553 1b6rA 355 78.59 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1ps9A 671 78.88 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2p4hX 322 79.41 1y8qA 346 79.50 1sbyA 254 82.34 c.2.1.2 118930 2h6eA 344 82.61 1yqzA 438 82.75 1wznA 252 82.92 c.66.1.43 121525 1xq6A 253 83.17 c.2.1.2 115829 2jhfA 374 83.35 b.35.1.2,c.2.1.1 138314,138315 1othA 321 83.96 c.78.1.1,c.78.1.1 35260,35261 1pl8A 356 85.70 b.35.1.2,c.2.1.1 94878,94879 2yquA 455 86.66 2eq6A 464 86.84 2csuA 457 88.81 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1xvaA 292 89.21 c.66.1.5 34183