# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000497 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.000701 2ahrA 259 0.000726 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 0.001081 2cvzA 289 0.001250 a.100.1.1,c.2.1.6 130890,130891 1yb4A 295 0.001264 2h78A 302 0.001391 2p4qA 497 0.001824 2rcyA 262 0.002132 2pgdA 482 0.002660 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.002668 2pgd 482 0.002815 2f1kA 279 0.003661 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.005560 1mv8A 436 0.006072 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 3c24A 286 0.006139 2dpoA 319 0.006225 2o3jA 481 0.006872 2g5cA 281 0.007880 a.100.1.12,c.2.1.6 134646,134647 1qmgA 524 0.009742 a.100.1.2,c.2.1.6 18785,30182 1np3A 338 0.01009 a.100.1.2,c.2.1.6 85946,85947 1bg6A 359 0.01133 a.100.1.5,c.2.1.6 18810,30214 2pv7A 298 0.01141 2i76A 276 0.01340 1i36A 264 0.01461 a.100.1.8,c.2.1.6 71108,71109 1evyA 366 0.01466 a.100.1.6,c.2.1.6 18811,30215 1ks9A 291 0.01627 a.100.1.7,c.2.1.6 68857,68858 1z82A 335 0.01702 1bg6 359 0.01941 1yrlA 491 0.02064 1f0yA 302 0.02919 a.100.1.3,c.2.1.6 18793,30197 1x0vA 354 0.03125 2qytA 317 0.03171 1txgA 335 0.03367 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 0.03548 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zejA 293 0.06328 1zcjA 463 0.07064 1dljA 402 0.07530 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1jayA 212 0.1101 c.2.1.6 66478 1qv9A 283 0.2985 c.127.1.1 96356 1vjtA 483 0.5735 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 0.7689 c.2.1.5,d.162.1.2 86760,86761 1s6yA 450 0.9307 c.2.1.5,d.162.1.2 105314,105315 2axqA 467 1.340 1guzA 310 1.392 c.2.1.5,d.162.1.1 65586,65587 1lldA 319 1.802 c.2.1.5,d.162.1.1 30177,42144 1hyhA 309 1.818 c.2.1.5,d.162.1.1 30150,42117 1t2dA 322 1.829 c.2.1.5,d.162.1.1 99084,99085 1pzgA 331 1.867 c.2.1.5,d.162.1.1 95425,95426 2b0jA 358 2.320 a.100.1.11,c.2.1.6 127639,127640 1u8xX 472 2.895 c.2.1.5,d.162.1.2 107741,107742 2nvwA 479 2.913 c.2.1.3,d.81.1.5 138665,138666 1f06A 320 3.023 c.2.1.3,d.81.1.3 59556,59557 2v7pA 310 3.125 1up7A 417 3.131 c.2.1.5,d.162.1.2 113374,113375 2ewdA 317 3.131 1gdhA 320 3.224 c.2.1.4,c.23.12.1 30095,31355 1ygyA 529 3.279 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1a5zA 319 3.315 c.2.1.5,d.162.1.1 30181,42148 1ez4A 318 3.409 c.2.1.5,d.162.1.1 64917,64918 1x7dA 350 3.690 c.2.1.13 114927 1li4A 432 3.801 c.2.1.4,c.23.12.3 84616,84617 2nacA 393 3.963 c.2.1.4,c.23.12.1 30088,31348 2j6iA 364 4.254 2fssA 365 4.261 1j4aA 333 4.567 c.2.1.4,c.23.12.1 71502,71503 1uxjA 309 4.606 c.2.1.5,d.162.1.1 108112,108113 1omoA 322 4.630 c.2.1.13 104017 1lssA 140 4.691 c.2.1.9 74246 2dbqA 334 4.780 6ldhA 329 4.858 c.2.1.5,d.162.1.1 30161,42128 1mx3A 347 4.901 c.2.1.4,c.23.12.1 79638,79639 1wwkA 307 4.904 1gpjA 404 5.128 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2o4uX 334 5.311 2i6tA 303 5.356 2ho3A 325 5.482 2pi1A 334 5.823 1ff9A 450 5.875 c.2.1.3,d.81.1.2 30039,39954 3ceaA 346 6.111 1h6dA 433 6.269 c.2.1.3,d.81.1.5 65656,65657 2gcgA 330 6.322 1v8bA 479 6.407 c.2.1.4,c.23.12.3 113564,113565 2dc1A 236 6.691 2q4eA 362 6.737 2o4cA 380 6.763 1xdwA 331 6.763 3bioA 304 6.876 2p2sA 336 7.076 1dxyA 333 7.242 c.2.1.4,c.23.12.1 30094,31354 1dxy 333 7.536 2eggA 297 7.652 1tltA 319 8.158 c.2.1.3,d.81.1.5 107135,107136 1drwA 273 8.182 c.2.1.3,d.81.1.3 30057,39972 1xeaA 323 8.648 c.2.1.3,d.81.1.5 109572,109573 1nvmB 312 8.733 c.2.1.3,d.81.1.1 86251,86252 1rydA 387 8.760 c.2.1.3,d.81.1.5 118801,118802 2hjsA 340 8.798 c.2.1.3,d.81.1.1 136547,136548 1drw 273 8.921 2ixaA 444 9.030 2hk9A 275 9.245 1pjcA 361 9.278 c.2.1.4,c.23.12.2 30101,31361 2glxA 332 9.448 1p77A 272 9.819 c.2.1.7,c.58.1.5 94214,94215 3c1aA 315 10.23 2g76A 335 10.65 2cukA 311 10.80 2r6jA 318 10.84 1zh8A 340 11.06 c.2.1.3,d.81.1.5 125077,125078 2d5cA 263 11.81 1sc6A 404 11.88 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2nloA 302 12.37 2vhxA 377 12.48 2d0iA 333 13.76 1lsuA 147 14.05 c.2.1.9 74250 2r00A 336 14.42 2ejwA 332 15.53 1qp8A 303 15.55 c.2.1.4,c.23.12.1 30092,31352 2aefA 234 15.82 2g17A 337 16.66 c.2.1.3,d.81.1.1 134512,134513 1j5pA 253 16.92 d.81.1.3,c.2.1.3 71577,83092 1lehA 364 17.02 c.2.1.7,c.58.1.1 30268,33916 1npyA 271 17.25 c.2.1.7,c.58.1.5 85995,85996 1vknA 351 17.47 c.2.1.3,d.81.1.1 108676,108677 2cmd 312 18.15 2vojA 371 18.39 1o6zA 303 18.69 c.2.1.5,d.162.1.1 81107,81108 1id1A 153 19.46 c.2.1.9 62286 1nytA 271 19.60 c.2.1.7,c.58.1.5 86417,86418 2gz1A 366 19.79 c.2.1.3,d.81.1.1 135887,135888 2hmvA 144 20.07 c.2.1.9 136615 1nvtA 287 20.10 c.2.1.7,c.58.1.5 86270,86271 1y81A 138 20.98 c.2.1.8 122731 2o7sA 523 21.23 2g1uA 155 21.41 2ph5A 480 22.91 1xgkA 352 22.93 c.2.1.2 115286 2nqtA 352 23.21 3c85A 183 23.62 1x13A 401 24.02 1hdoA 206 25.87 c.2.1.2 60965 1yovA 537 26.69 c.111.1.2 123785 2cmdA 312 28.83 c.2.1.5,d.162.1.1 30135,42102 2q49A 359 28.88 c.2.1.3,d.81.1.1 139831,139832 1sb8A 352 28.94 c.2.1.2 105410 2pzmA 330 29.96 2gn4A 344 31.11 2eklA 313 31.68 1mldA 314 31.80 c.2.1.5,d.162.1.1 30122,42089 1y1pA 342 32.16 c.2.1.2 122550 2fk8A 318 33.07 c.66.1.18 133648 1lc0A 294 33.21 c.2.1.3,d.81.1.4 73823,73824 1luaA 287 33.79 c.2.1.7,c.58.1.4 78216,78217 2b69A 343 33.89 c.2.1.2 127974 2bllA 345 34.86 c.2.1.2 128733 2d59A 144 35.25 c.2.1.8 131266 1rkxA 357 36.49 c.2.1.2 97631 1ys4A 354 36.74 1lluA 342 39.17 b.35.1.2,c.2.1.1 91064,91065 1oc2A 348 40.07 c.2.1.2 92765 1z45A 699 40.77 b.30.5.4,c.2.1.2 124427,124428 2z1mA 345 41.08 1yqdA 366 41.64 1c1dA 355 44.58 c.2.1.7,c.58.1.1 30270,33918 2gptA 523 44.72 2a35A 215 44.79 c.2.1.2 126072 1i2cA 404 45.90 c.2.1.2 83666 1b7gO 340 47.24 c.2.1.3,d.81.1.1 29992,39907 2c29D 337 47.55 2exxA 306 48.25 2gasA 307 48.29 3cc8A 230 48.78 1q7gA 359 48.93 c.2.1.3,d.81.1.2 96038,96039 1l7dA 384 49.61 c.2.1.4,c.23.12.2 77774,77775 1iukA 140 50.37 c.2.1.8 83712 1ebfA 358 52.01 c.2.1.3,d.81.1.2 30033,39948 1uufA 369 52.10 b.35.1.2,c.2.1.1 100006,100007 2q1sA 377 52.29 1z7bA 358 54.17 c.2.1.2 124599 1t2aA 375 54.76 c.2.1.2 99078 1fl2A 310 55.80 c.3.1.5,c.3.1.5 59869,59870 1hyeA 313 56.61 c.2.1.5,d.162.1.1 61400,61401 2yqzA 263 56.77 1xg5A 279 57.36 c.2.1.2 115277 4uagA 437 58.73 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 3c8mA 331 59.61 1orrA 347 60.22 c.2.1.2 93460 1wvgA 359 60.93 c.2.1.2 121339 2gqwA 408 61.10 1y7tA 327 61.14 c.2.1.5,d.162.1.1 122718,122719 1yxmA 303 61.18 c.2.1.2 124192 2cf5A 357 61.31 2czcA 334 61.58 d.81.1.1 131044 1r6dA 337 64.48 c.2.1.2 97148 2bkaA 242 65.76 c.2.1.2 128666 1vi2A 300 66.15 c.2.1.7,c.58.1.5 100726,100727 1nhsA 447 66.68 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1xq6A 253 67.38 c.2.1.2 115829 1f8fA 371 67.67 b.35.1.2,c.2.1.1 83246,83247 1l1eA 287 69.89 c.66.1.18 73454 1nhpA 447 70.38 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 1wznA 252 70.91 c.66.1.43 121525 1bdmA 327 72.25 c.2.1.5,d.162.1.1 30137,42104 2dm6A 333 72.47 b.35.1.2,c.2.1.1 131567,131568 1ri5A 298 72.76 c.66.1.34 97502 1w4xA 542 73.26 c.3.1.5,c.3.1.5 109171,109172 2p5yA 311 73.83 1xvaA 292 74.59 c.66.1.5 34183 1ve3A 227 75.19 c.66.1.43 120010 2ozpA 345 75.56 1xu9A 286 75.76 c.2.1.2 116052 1m6iA 493 77.17 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2p4hX 322 81.15 2hcyA 347 81.18 2gdzA 267 82.43 c.2.1.2 135043 1y8qA 346 83.38 1xxlA 239 83.91 c.66.1.41 116203 2a4kA 263 84.40 c.2.1.2 126156 1vj0A 380 85.55 b.35.1.2,c.2.1.1 100786,100787 1p0fA 373 87.37 b.35.1.2,c.2.1.1 87642,87643