# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ahrA 259 0.004636 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.004824 1vpdA 299 0.005097 a.100.1.1,c.2.1.6 113951,113952 1yqgA 263 0.007314 2p4qA 497 0.008685 1yb4A 295 0.009153 2pgd 482 0.009378 2graA 277 0.01001 2pgdA 482 0.01173 a.100.1.1,c.2.1.6 18778,30190 2h78A 302 0.01184 2cvzA 289 0.01216 a.100.1.1,c.2.1.6 130890,130891 2rcyA 262 0.01458 2f1kA 279 0.01939 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.02932 3c24A 286 0.03960 2i76A 276 0.04426 2dpoA 319 0.04468 1evyA 366 0.04546 a.100.1.6,c.2.1.6 18811,30215 2o3jA 481 0.04847 2g5cA 281 0.05033 a.100.1.12,c.2.1.6 134646,134647 1mv8A 436 0.05502 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2pv7A 298 0.05693 1np3A 338 0.05848 a.100.1.2,c.2.1.6 85946,85947 1qmgA 524 0.05991 a.100.1.2,c.2.1.6 18785,30182 1bg6A 359 0.06735 a.100.1.5,c.2.1.6 18810,30214 1yrlA 491 0.08190 1bg6 359 0.08248 1z82A 335 0.08399 1f0yA 302 0.08701 a.100.1.3,c.2.1.6 18793,30197 1i36A 264 0.09929 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 0.1019 a.100.1.7,c.2.1.6 68857,68858 1x0vA 354 0.1039 1dliA 402 0.1245 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.1337 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2qytA 317 0.1422 1txgA 335 0.1638 a.100.1.6,c.2.1.6 112775,112776 1zejA 293 0.2015 1zcjA 463 0.2190 1jayA 212 0.3962 c.2.1.6 66478 2axqA 467 1.379 1qv9A 283 2.313 c.127.1.1 96356 1pzgA 331 3.128 c.2.1.5,d.162.1.1 95425,95426 1x7dA 350 3.556 c.2.1.13 114927 1f06A 320 3.841 c.2.1.3,d.81.1.3 59556,59557 2nvwA 479 3.873 c.2.1.3,d.81.1.5 138665,138666 1vjtA 483 3.874 c.2.1.5,d.162.1.2 100833,100834 1t2dA 322 3.943 c.2.1.5,d.162.1.1 99084,99085 2o4uX 334 4.113 1ygyA 529 4.274 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2p2sA 336 4.290 1li4A 432 4.386 c.2.1.4,c.23.12.3 84616,84617 1obbA 480 4.390 c.2.1.5,d.162.1.2 86760,86761 2q4eA 362 4.621 1h6dA 433 4.780 c.2.1.3,d.81.1.5 65656,65657 2b0jA 358 4.866 a.100.1.11,c.2.1.6 127639,127640 2ewdA 317 5.031 1mx3A 347 5.113 c.2.1.4,c.23.12.1 79638,79639 2dc1A 236 5.187 1guzA 310 5.220 c.2.1.5,d.162.1.1 65586,65587 2fssA 365 5.356 3ceaA 346 5.383 1wwkA 307 5.415 1xeaA 323 5.421 c.2.1.3,d.81.1.5 109572,109573 2nacA 393 5.482 c.2.1.4,c.23.12.1 30088,31348 1drw 273 5.555 1omoA 322 5.565 c.2.1.13 104017 2glxA 332 5.625 2ho3A 325 6.182 1rydA 387 6.257 c.2.1.3,d.81.1.5 118801,118802 1gdhA 320 6.301 c.2.1.4,c.23.12.1 30095,31355 1hyhA 309 6.331 c.2.1.5,d.162.1.1 30150,42117 2dbqA 334 6.710 1v8bA 479 6.747 c.2.1.4,c.23.12.3 113564,113565 1lldA 319 6.768 c.2.1.5,d.162.1.1 30177,42144 1sc6A 404 6.783 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2j6iA 364 6.961 2gcgA 330 6.976 1tltA 319 7.158 c.2.1.3,d.81.1.5 107135,107136 2g76A 335 7.315 1ff9A 450 7.372 c.2.1.3,d.81.1.2 30039,39954 1u8xX 472 7.386 c.2.1.5,d.162.1.2 107741,107742 1uxjA 309 7.580 c.2.1.5,d.162.1.1 108112,108113 2eklA 313 8.120 1ez4A 318 8.268 c.2.1.5,d.162.1.1 64917,64918 2v7pA 310 8.475 2pi1A 334 8.587 1pjcA 361 8.595 c.2.1.4,c.23.12.2 30101,31361 1gpjA 404 8.618 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1zh8A 340 9.082 c.2.1.3,d.81.1.5 125077,125078 6ldhA 329 9.191 c.2.1.5,d.162.1.1 30161,42128 3c1aA 315 9.200 1xdwA 331 10.01 1j4aA 333 10.34 c.2.1.4,c.23.12.1 71502,71503 2i6tA 303 10.40 1dxy 333 10.69 1drwA 273 10.89 c.2.1.3,d.81.1.3 30057,39972 2d0iA 333 11.24 1s6yA 450 11.75 c.2.1.5,d.162.1.2 105314,105315 1a5zA 319 11.93 c.2.1.5,d.162.1.1 30181,42148 2eggA 297 11.99 1up7A 417 12.60 c.2.1.5,d.162.1.2 113374,113375 1qp8A 303 12.68 c.2.1.4,c.23.12.1 30092,31352 2vhxA 377 12.78 2cukA 311 12.93 3bioA 304 13.34 2o4cA 380 13.57 1nvmB 312 14.11 c.2.1.3,d.81.1.1 86251,86252 1lssA 140 14.37 c.2.1.9 74246 1nytA 271 14.52 c.2.1.7,c.58.1.5 86417,86418 2hjsA 340 15.12 c.2.1.3,d.81.1.1 136547,136548 1j5pA 253 15.21 d.81.1.3,c.2.1.3 71577,83092 1p77A 272 15.41 c.2.1.7,c.58.1.5 94214,94215 2vojA 371 16.29 1luaA 287 16.65 c.2.1.7,c.58.1.4 78216,78217 2hk9A 275 17.42 1lehA 364 18.20 c.2.1.7,c.58.1.1 30268,33916 2ejwA 332 18.49 1dxyA 333 18.62 c.2.1.4,c.23.12.1 30094,31354 1vknA 351 19.14 c.2.1.3,d.81.1.1 108676,108677 2nloA 302 19.30 2g17A 337 19.36 c.2.1.3,d.81.1.1 134512,134513 2ixaA 444 19.94 2d5cA 263 20.82 1o6zA 303 22.21 c.2.1.5,d.162.1.1 81107,81108 2r00A 336 23.79 2r6jA 318 26.23 1x13A 401 27.00 1xgkA 352 27.56 c.2.1.2 115286 1vi2A 300 30.61 c.2.1.7,c.58.1.5 100726,100727 1mldA 314 31.16 c.2.1.5,d.162.1.1 30122,42089 1nvtA 287 32.05 c.2.1.7,c.58.1.5 86270,86271 2aefA 234 32.49 2cmd 312 32.99 1y81A 138 33.22 c.2.1.8 122731 2q49A 359 33.35 c.2.1.3,d.81.1.1 139831,139832 1lc0A 294 33.77 c.2.1.3,d.81.1.4 73823,73824 3c85A 183 34.60 2bllA 345 34.61 c.2.1.2 128733 2ph5A 480 34.84 2cmdA 312 34.90 c.2.1.5,d.162.1.1 30135,42102 1sb8A 352 34.95 c.2.1.2 105410 1y1pA 342 35.26 c.2.1.2 122550 2g1uA 155 35.67 2d59A 144 36.41 c.2.1.8 131266 2gz1A 366 37.51 c.2.1.3,d.81.1.1 135887,135888 1lsuA 147 38.13 c.2.1.9 74250 2gasA 307 39.05 1oc2A 348 40.62 c.2.1.2 92765 1ys4A 354 40.89 1npyA 271 42.05 c.2.1.7,c.58.1.5 85995,85996 1l7dA 384 42.31 c.2.1.4,c.23.12.2 77774,77775 1iukA 140 42.81 c.2.1.8 83712 2nqtA 352 46.98 1hdoA 206 48.71 c.2.1.2 60965 1fl2A 310 48.74 c.3.1.5,c.3.1.5 59869,59870 2c29D 337 48.81 2hmvA 144 48.98 c.2.1.9 136615 2o7sA 523 49.01 2pzmA 330 51.52 2b69A 343 51.66 c.2.1.2 127974 2gn4A 344 53.81 1c1dA 355 54.23 c.2.1.7,c.58.1.1 30270,33918 3c8mA 331 54.58 1mo9A 523 55.10 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2exxA 306 55.79 2gdzA 267 57.51 c.2.1.2 135043 2gqwA 408 57.77 1m6iA 493 59.97 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1yovA 537 63.08 c.111.1.2 123785 1xg5A 279 63.58 c.2.1.2 115277 2pk3A 321 64.59 1q7gA 359 64.69 c.2.1.3,d.81.1.2 96038,96039 1q1rA 431 64.89 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1xq6A 253 66.00 c.2.1.2 115829 2a35A 215 66.04 c.2.1.2 126072 1id1A 153 66.37 c.2.1.9 62286 1yxmA 303 70.12 c.2.1.2 124192 2p4hX 322 72.29 1wmaA 276 72.77 c.2.1.2 121042 2czcA 334 73.18 d.81.1.1 131044 2dm6A 333 73.57 b.35.1.2,c.2.1.1 131567,131568 3grsA 478 74.42 c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1t4bA 367 74.80 c.2.1.3,d.81.1.1 106406,106407 2a4kA 263 74.84 c.2.1.2 126156 1bdmA 327 75.77 c.2.1.5,d.162.1.1 30137,42104 2q1sA 377 76.31 1vl5A 260 76.44 c.66.1.41 108720 2cduA 452 77.35 1b7gO 340 77.43 c.2.1.3,d.81.1.1 29992,39907 1xu9A 286 77.74 c.2.1.2 116052 1z7bA 358 79.88 c.2.1.2 124599 2bkaA 242 81.94 c.2.1.2 128666 2fk8A 318 82.13 c.66.1.18 133648 1ri5A 298 85.27 c.66.1.34 97502 1lluA 342 85.76 b.35.1.2,c.2.1.1 91064,91065 1w4xA 542 87.03 c.3.1.5,c.3.1.5 109171,109172 1y8qA 346 89.10 1lvlA 458 89.20 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1gesA 450 89.21 c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168