# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.002144 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.002837 2ahrA 259 0.003706 a.100.1.10,c.2.1.6 126775,126776 1yb4A 295 0.004365 2h78A 302 0.004466 1yqgA 263 0.004517 2cvzA 289 0.005992 a.100.1.1,c.2.1.6 130890,130891 2rcyA 262 0.006556 2pgd 482 0.007751 2p4qA 497 0.007827 2pgdA 482 0.008858 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.009412 2f1kA 279 0.01518 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.01629 2o3jA 481 0.01825 2dpoA 319 0.01862 3c24A 286 0.02218 1qmgA 524 0.02266 a.100.1.2,c.2.1.6 18785,30182 1mv8A 436 0.02610 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2i76A 276 0.03035 1np3A 338 0.03057 a.100.1.2,c.2.1.6 85946,85947 2pv7A 298 0.03269 2g5cA 281 0.03303 a.100.1.12,c.2.1.6 134646,134647 1bg6A 359 0.04028 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 0.04082 a.100.1.7,c.2.1.6 68857,68858 1i36A 264 0.04686 a.100.1.8,c.2.1.6 71108,71109 1evyA 366 0.04786 a.100.1.6,c.2.1.6 18811,30215 1z82A 335 0.06123 1yrlA 491 0.06521 1x0vA 354 0.06575 1dliA 402 0.07488 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1bg6 359 0.08269 1f0yA 302 0.08744 a.100.1.3,c.2.1.6 18793,30197 1dljA 402 0.1061 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1txgA 335 0.1360 a.100.1.6,c.2.1.6 112775,112776 2qytA 317 0.1404 1zejA 293 0.2128 1zcjA 463 0.2276 1jayA 212 0.2468 c.2.1.6 66478 1qv9A 283 0.6417 c.127.1.1 96356 1vjtA 483 2.021 c.2.1.5,d.162.1.2 100833,100834 1guzA 310 2.710 c.2.1.5,d.162.1.1 65586,65587 2axqA 467 2.764 1t2dA 322 2.943 c.2.1.5,d.162.1.1 99084,99085 1hyhA 309 3.115 c.2.1.5,d.162.1.1 30150,42117 2b0jA 358 3.642 a.100.1.11,c.2.1.6 127639,127640 1obbA 480 3.661 c.2.1.5,d.162.1.2 86760,86761 1u8xX 472 3.950 c.2.1.5,d.162.1.2 107741,107742 1pzgA 331 4.090 c.2.1.5,d.162.1.1 95425,95426 2ewdA 317 4.239 1gdhA 320 4.280 c.2.1.4,c.23.12.1 30095,31355 1ygyA 529 4.347 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1ez4A 318 4.589 c.2.1.5,d.162.1.1 64917,64918 1s6yA 450 5.104 c.2.1.5,d.162.1.2 105314,105315 1lssA 140 5.463 c.2.1.9 74246 1lldA 319 5.513 c.2.1.5,d.162.1.1 30177,42144 2nacA 393 5.513 c.2.1.4,c.23.12.1 30088,31348 6ldhA 329 5.567 c.2.1.5,d.162.1.1 30161,42128 1up7A 417 5.919 c.2.1.5,d.162.1.2 113374,113375 1uxjA 309 6.004 c.2.1.5,d.162.1.1 108112,108113 2dc1A 236 6.222 1j4aA 333 6.321 c.2.1.4,c.23.12.1 71502,71503 2i6tA 303 7.192 2dbqA 334 7.512 1f06A 320 7.669 c.2.1.3,d.81.1.3 59556,59557 2q4eA 362 8.090 1a5zA 319 8.289 c.2.1.5,d.162.1.1 30181,42148 2nvwA 479 8.311 c.2.1.3,d.81.1.5 138665,138666 2p2sA 336 8.520 2v7pA 310 8.675 2o4uX 334 8.877 1wwkA 307 9.014 1xeaA 323 9.301 c.2.1.3,d.81.1.5 109572,109573 1dxy 333 9.470 3ceaA 346 9.499 1omoA 322 10.01 c.2.1.13 104017 2o4cA 380 10.39 1xdwA 331 10.50 1drw 273 10.78 1mx3A 347 10.96 c.2.1.4,c.23.12.1 79638,79639 2pi1A 334 11.35 1lsuA 147 12.14 c.2.1.9 74250 1drwA 273 12.23 c.2.1.3,d.81.1.3 30057,39972 2fssA 365 12.31 1sc6A 404 12.53 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxyA 333 12.60 c.2.1.4,c.23.12.1 30094,31354 1h6dA 433 12.78 c.2.1.3,d.81.1.5 65656,65657 2hk9A 275 12.79 2ho3A 325 12.81 3bioA 304 12.82 2cukA 311 13.28 1nvmB 312 13.35 c.2.1.3,d.81.1.1 86251,86252 2g17A 337 13.39 c.2.1.3,d.81.1.1 134512,134513 2eggA 297 13.68 2d5cA 263 14.03 1qp8A 303 14.08 c.2.1.4,c.23.12.1 30092,31352 2hmvA 144 14.46 c.2.1.9 136615 2glxA 332 15.07 2g76A 335 15.48 3c1aA 315 15.90 2gcgA 330 17.87 1x7dA 350 18.41 c.2.1.13 114927 1li4A 432 18.54 c.2.1.4,c.23.12.3 84616,84617 2hjsA 340 18.99 c.2.1.3,d.81.1.1 136547,136548 2nqtA 352 19.31 2d0iA 333 19.48 1zh8A 340 19.66 c.2.1.3,d.81.1.5 125077,125078 2aefA 234 21.02 1tltA 319 21.16 c.2.1.3,d.81.1.5 107135,107136 1pjcA 361 22.00 c.2.1.4,c.23.12.2 30101,31361 1luaA 287 22.39 c.2.1.7,c.58.1.4 78216,78217 1gpjA 404 22.98 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1nytA 271 23.27 c.2.1.7,c.58.1.5 86417,86418 1ff9A 450 23.69 c.2.1.3,d.81.1.2 30039,39954 1j5pA 253 24.69 d.81.1.3,c.2.1.3 71577,83092 2ixaA 444 24.79 2cmd 312 25.04 2j6iA 364 25.13 2g1uA 155 26.31 2eklA 313 26.37 1vknA 351 27.01 c.2.1.3,d.81.1.1 108676,108677 1y81A 138 27.26 c.2.1.8 122731 2r6jA 318 27.78 1mldA 314 27.95 c.2.1.5,d.162.1.1 30122,42089 1id1A 153 29.84 c.2.1.9 62286 1x13A 401 30.08 1vi2A 300 30.21 c.2.1.7,c.58.1.5 100726,100727 2vojA 371 30.47 1rydA 387 31.36 c.2.1.3,d.81.1.5 118801,118802 1p77A 272 31.85 c.2.1.7,c.58.1.5 94214,94215 1sb8A 352 32.22 c.2.1.2 105410 2d59A 144 32.74 c.2.1.8 131266 1xgkA 352 33.25 c.2.1.2 115286 3c85A 183 33.78 2nloA 302 34.66 2o7sA 523 35.16 2cmdA 312 36.14 c.2.1.5,d.162.1.1 30135,42102 2ejwA 332 36.19 1lc0A 294 36.60 c.2.1.3,d.81.1.4 73823,73824 2cduA 452 38.47 2r00A 336 39.23 2b69A 343 41.75 c.2.1.2 127974 2q49A 359 41.93 c.2.1.3,d.81.1.1 139831,139832 1yovA 537 43.41 c.111.1.2 123785 2ph5A 480 44.88 1npyA 271 45.25 c.2.1.7,c.58.1.5 85995,85996 1o6zA 303 45.82 c.2.1.5,d.162.1.1 81107,81108 2fk8A 318 47.91 c.66.1.18 133648 3c8mA 331 49.36 1y1pA 342 50.87 c.2.1.2 122550 1oc2A 348 51.29 c.2.1.2 92765 1nvtA 287 51.94 c.2.1.7,c.58.1.5 86270,86271 1xxlA 239 52.14 c.66.1.41 116203 1hdoA 206 52.22 c.2.1.2 60965 1c1dA 355 52.70 c.2.1.7,c.58.1.1 30270,33918 3cc8A 230 54.94 2pzmA 330 57.62 1oi7A 288 57.96 c.2.1.8,c.23.4.1 87049,87050 2gasA 307 58.49 1lluA 342 60.09 b.35.1.2,c.2.1.1 91064,91065 1z7bA 358 60.29 c.2.1.2 124599 2gz1A 366 60.48 c.2.1.3,d.81.1.1 135887,135888 1rkxA 357 60.92 c.2.1.2 97631 1iukA 140 62.55 c.2.1.8 83712 1orrA 347 62.94 c.2.1.2 93460 1nhsA 447 63.25 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1yxmA 303 63.42 c.2.1.2 124192 1kyqA 274 65.91 c.2.1.11,e.37.1.1 73281,73282 2gn4A 344 66.07 1xu9A 286 66.49 c.2.1.2 116052 1uirA 314 67.25 c.66.1.17 99429 1vl5A 260 68.27 c.66.1.41 108720 1t4bA 367 68.95 c.2.1.3,d.81.1.1 106406,106407 2p91A 285 70.52 2p5yA 311 71.39 1y8qA 346 71.67 1mo9A 523 71.96 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2a35A 215 72.86 c.2.1.2 126072 1hyeA 313 73.62 c.2.1.5,d.162.1.1 61400,61401 1y7tA 327 74.47 c.2.1.5,d.162.1.1 122718,122719 2exxA 306 76.22 1eq2A 310 76.44 c.2.1.2 29814 1w6uA 302 77.54 c.2.1.2 114288 1xg5A 279 79.33 c.2.1.2 115277 2yqzA 263 80.51 1ri5A 298 82.38 c.66.1.34 97502 2hrzA 342 82.85 2gqwA 408 83.36 1ys4A 354 83.58 1b7gO 340 85.88 c.2.1.3,d.81.1.1 29992,39907 1m6iA 493 86.37 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1hxhA 253 86.57 c.2.1.2 76725 1xq6A 253 86.75 c.2.1.2 115829 1l7dA 384 88.09 c.2.1.4,c.23.12.2 77774,77775 2csuA 457 88.53 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1q1rA 431 88.78 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602