# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.001469 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.001768 2ahrA 259 0.001895 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 0.002457 1yb4A 295 0.002625 2graA 277 0.003369 2h78A 302 0.003461 2cvzA 289 0.003776 a.100.1.1,c.2.1.6 130890,130891 2p4qA 497 0.003845 2pgd 482 0.004195 2rcyA 262 0.004361 2pgdA 482 0.004597 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.006674 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.01085 2dpoA 319 0.01135 2ew2A 316 0.01178 1mv8A 436 0.01324 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2o3jA 481 0.01581 2g5cA 281 0.01624 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 0.01721 a.100.1.2,c.2.1.6 85946,85947 1qmgA 524 0.01948 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 0.01958 2i76A 276 0.02185 1bg6A 359 0.02408 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 0.02508 a.100.1.7,c.2.1.6 68857,68858 1i36A 264 0.02712 a.100.1.8,c.2.1.6 71108,71109 1evyA 366 0.03332 a.100.1.6,c.2.1.6 18811,30215 1yrlA 491 0.03468 1z82A 335 0.03942 1bg6 359 0.04887 1f0yA 302 0.05057 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 0.05914 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1x0vA 354 0.06026 2qytA 317 0.06245 1txgA 335 0.07474 a.100.1.6,c.2.1.6 112775,112776 1dljA 402 0.09573 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.1405 1zejA 293 0.1430 1jayA 212 0.1654 c.2.1.6 66478 1qv9A 283 0.2186 c.127.1.1 96356 1vjtA 483 1.048 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 1.436 c.2.1.5,d.162.1.2 86760,86761 2axqA 467 1.682 2b0jA 358 2.220 a.100.1.11,c.2.1.6 127639,127640 1s6yA 450 2.261 c.2.1.5,d.162.1.2 105314,105315 1guzA 310 2.510 c.2.1.5,d.162.1.1 65586,65587 1lldA 319 2.583 c.2.1.5,d.162.1.1 30177,42144 1hyhA 309 2.912 c.2.1.5,d.162.1.1 30150,42117 1pzgA 331 3.297 c.2.1.5,d.162.1.1 95425,95426 1f06A 320 3.825 c.2.1.3,d.81.1.3 59556,59557 1u8xX 472 3.933 c.2.1.5,d.162.1.2 107741,107742 1ygyA 529 3.941 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1t2dA 322 4.047 c.2.1.5,d.162.1.1 99084,99085 1gdhA 320 4.653 c.2.1.4,c.23.12.1 30095,31355 2nvwA 479 4.950 c.2.1.3,d.81.1.5 138665,138666 1up7A 417 5.176 c.2.1.5,d.162.1.2 113374,113375 2ewdA 317 5.345 2dc1A 236 5.656 1ez4A 318 6.070 c.2.1.5,d.162.1.1 64917,64918 2j6iA 364 6.087 2q4eA 362 6.097 2fssA 365 6.215 2nacA 393 6.330 c.2.1.4,c.23.12.1 30088,31348 1lssA 140 6.468 c.2.1.9 74246 1x7dA 350 6.615 c.2.1.13 114927 2p2sA 336 7.132 2o4cA 380 7.152 1drw 273 7.266 1omoA 322 7.451 c.2.1.13 104017 1h6dA 433 7.503 c.2.1.3,d.81.1.5 65656,65657 1uxjA 309 7.651 c.2.1.5,d.162.1.1 108112,108113 1j4aA 333 7.709 c.2.1.4,c.23.12.1 71502,71503 1mx3A 347 7.791 c.2.1.4,c.23.12.1 79638,79639 2i6tA 303 7.804 2ho3A 325 8.051 2v7pA 310 8.110 2dbqA 334 8.347 3ceaA 346 8.366 1tltA 319 8.405 c.2.1.3,d.81.1.5 107135,107136 1v8bA 479 8.518 c.2.1.4,c.23.12.3 113564,113565 1li4A 432 8.532 c.2.1.4,c.23.12.3 84616,84617 3bioA 304 8.578 1drwA 273 8.688 c.2.1.3,d.81.1.3 30057,39972 6ldhA 329 8.727 c.2.1.5,d.162.1.1 30161,42128 1nvmB 312 9.093 c.2.1.3,d.81.1.1 86251,86252 1wwkA 307 9.106 1a5zA 319 9.116 c.2.1.5,d.162.1.1 30181,42148 1dxy 333 9.325 2gcgA 330 9.395 3c1aA 315 9.490 1rydA 387 9.652 c.2.1.3,d.81.1.5 118801,118802 1xdwA 331 9.788 2hjsA 340 10.49 c.2.1.3,d.81.1.1 136547,136548 2eklA 313 10.50 2o4uX 334 10.62 2pi1A 334 10.75 2eggA 297 11.24 1ff9A 450 11.27 c.2.1.3,d.81.1.2 30039,39954 1xeaA 323 11.50 c.2.1.3,d.81.1.5 109572,109573 1gpjA 404 11.54 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2cukA 311 12.75 1zh8A 340 12.77 c.2.1.3,d.81.1.5 125077,125078 1vknA 351 14.26 c.2.1.3,d.81.1.1 108676,108677 2ixaA 444 14.51 1dxyA 333 14.55 c.2.1.4,c.23.12.1 30094,31354 2glxA 332 14.66 2g17A 337 14.80 c.2.1.3,d.81.1.1 134512,134513 1sc6A 404 14.95 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1lsuA 147 14.97 c.2.1.9 74250 2r6jA 318 15.24 2hk9A 275 15.32 1qp8A 303 16.65 c.2.1.4,c.23.12.1 30092,31352 1pjcA 361 16.76 c.2.1.4,c.23.12.2 30101,31361 2g76A 335 17.71 2d0iA 333 17.98 1j5pA 253 20.25 d.81.1.3,c.2.1.3 71577,83092 2r00A 336 20.70 2nloA 302 21.06 2hmvA 144 21.26 c.2.1.9 136615 2aefA 234 21.92 2g1uA 155 22.23 2q49A 359 22.34 c.2.1.3,d.81.1.1 139831,139832 1p77A 272 22.62 c.2.1.7,c.58.1.5 94214,94215 2gz1A 366 22.73 c.2.1.3,d.81.1.1 135887,135888 2d5cA 263 22.91 1yovA 537 22.97 c.111.1.2 123785 2nqtA 352 25.24 1nytA 271 25.75 c.2.1.7,c.58.1.5 86417,86418 2ejwA 332 27.06 2ph5A 480 27.95 1nvtA 287 28.33 c.2.1.7,c.58.1.5 86270,86271 2c29D 337 29.07 1x13A 401 29.20 1ys4A 354 29.80 1lc0A 294 29.94 c.2.1.3,d.81.1.4 73823,73824 1o6zA 303 33.16 c.2.1.5,d.162.1.1 81107,81108 1xgkA 352 33.42 c.2.1.2 115286 2cmd 312 33.58 1id1A 153 33.59 c.2.1.9 62286 1sb8A 352 34.84 c.2.1.2 105410 1y1pA 342 35.51 c.2.1.2 122550 2vhxA 377 35.69 1mldA 314 35.93 c.2.1.5,d.162.1.1 30122,42089 1lehA 364 36.20 c.2.1.7,c.58.1.1 30268,33916 1y81A 138 36.22 c.2.1.8 122731 1npyA 271 38.85 c.2.1.7,c.58.1.5 85995,85996 2cmdA 312 39.21 c.2.1.5,d.162.1.1 30135,42102 2pzmA 330 40.37 2gn4A 344 40.85 3c85A 183 41.10 1hdoA 206 45.79 c.2.1.2 60965 1l7dA 384 46.23 c.2.1.4,c.23.12.2 77774,77775 1b7gO 340 46.26 c.2.1.3,d.81.1.1 29992,39907 2fk8A 318 46.63 c.66.1.18 133648 1iukA 140 47.29 c.2.1.8 83712 2gasA 307 48.44 2gdzA 267 49.92 c.2.1.2 135043 1q7gA 359 50.44 c.2.1.3,d.81.1.2 96038,96039 2d59A 144 50.74 c.2.1.8 131266 1luaA 287 50.90 c.2.1.7,c.58.1.4 78216,78217 2b69A 343 51.76 c.2.1.2 127974 2vojA 371 52.02 1oc2A 348 52.90 c.2.1.2 92765 2a35A 215 53.27 c.2.1.2 126072 1yxmA 303 53.34 c.2.1.2 124192 2pk3A 321 58.58 2bllA 345 59.68 c.2.1.2 128733 1fl2A 310 60.54 c.3.1.5,c.3.1.5 59869,59870 1kyqA 274 60.80 c.2.1.11,e.37.1.1 73281,73282 1vi2A 300 61.92 c.2.1.7,c.58.1.5 100726,100727 1yqdA 366 62.65 1y7tA 327 65.23 c.2.1.5,d.162.1.1 122718,122719 2o7sA 523 65.32 2cf5A 357 65.93 2exxA 306 66.35 1y8qA 346 67.80 2ozpA 345 68.51 1ri5A 298 69.63 c.66.1.34 97502 1wmaA 276 71.78 c.2.1.2 121042 1z7bA 358 72.13 c.2.1.2 124599 1nhsA 447 72.49 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1t4bA 367 73.18 c.2.1.3,d.81.1.1 106406,106407 2cduA 452 74.93 3c8mA 331 75.85 1xg5A 279 76.21 c.2.1.2 115277 2bkaA 242 76.64 c.2.1.2 128666 4uagA 437 79.77 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1lluA 342 80.93 b.35.1.2,c.2.1.1 91064,91065 1xu9A 286 82.11 c.2.1.2 116052 1xq6A 253 83.33 c.2.1.2 115829 1i2cA 404 84.45 c.2.1.2 83666 2z1mA 345 87.79 2czcA 334 88.48 d.81.1.1 131044 3cc8A 230 88.98