# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000681 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000942 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.001040 1yqgA 263 0.001348 1yb4A 295 0.001359 2cvzA 289 0.001764 a.100.1.1,c.2.1.6 130890,130891 2graA 277 0.001878 2h78A 302 0.001965 2p4qA 497 0.002087 2pgd 482 0.002105 2pgdA 482 0.002232 a.100.1.1,c.2.1.6 18778,30190 2rcyA 262 0.002492 2f1kA 279 0.003474 a.100.1.12,c.2.1.6 132772,132773 1mv8A 436 0.006146 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2ew2A 316 0.006947 3c24A 286 0.007068 2dpoA 319 0.007137 2g5cA 281 0.009796 a.100.1.12,c.2.1.6 134646,134647 2o3jA 481 0.01015 1qmgA 524 0.01062 a.100.1.2,c.2.1.6 18785,30182 1np3A 338 0.01144 a.100.1.2,c.2.1.6 85946,85947 2i76A 276 0.01238 1bg6A 359 0.01407 a.100.1.5,c.2.1.6 18810,30214 2pv7A 298 0.01417 1evyA 366 0.01583 a.100.1.6,c.2.1.6 18811,30215 1ks9A 291 0.01662 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.01681 1i36A 264 0.01724 a.100.1.8,c.2.1.6 71108,71109 1dliA 402 0.02704 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1bg6 359 0.02775 1z82A 335 0.02816 1x0vA 354 0.02968 1f0yA 302 0.03292 a.100.1.3,c.2.1.6 18793,30197 2qytA 317 0.04282 1txgA 335 0.04489 a.100.1.6,c.2.1.6 112775,112776 1dljA 402 0.05412 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.08796 1zejA 293 0.09136 1jayA 212 0.1181 c.2.1.6 66478 1qv9A 283 0.2014 c.127.1.1 96356 1vjtA 483 0.8500 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 0.9124 c.2.1.5,d.162.1.2 86760,86761 2axqA 467 1.339 2b0jA 358 1.615 a.100.1.11,c.2.1.6 127639,127640 1s6yA 450 1.625 c.2.1.5,d.162.1.2 105314,105315 1guzA 310 1.756 c.2.1.5,d.162.1.1 65586,65587 1hyhA 309 2.161 c.2.1.5,d.162.1.1 30150,42117 1lldA 319 2.272 c.2.1.5,d.162.1.1 30177,42144 1pzgA 331 2.453 c.2.1.5,d.162.1.1 95425,95426 1ygyA 529 2.467 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1u8xX 472 2.873 c.2.1.5,d.162.1.2 107741,107742 2nvwA 479 2.878 c.2.1.3,d.81.1.5 138665,138666 1gdhA 320 2.918 c.2.1.4,c.23.12.1 30095,31355 1f06A 320 3.118 c.2.1.3,d.81.1.3 59556,59557 2fssA 365 3.290 2j6iA 364 3.404 2nacA 393 3.442 c.2.1.4,c.23.12.1 30088,31348 1t2dA 322 3.605 c.2.1.5,d.162.1.1 99084,99085 2ewdA 317 3.926 2q4eA 362 3.927 1up7A 417 3.935 c.2.1.5,d.162.1.2 113374,113375 1x7dA 350 3.967 c.2.1.13 114927 2dc1A 236 4.090 2dbqA 334 4.370 1j4aA 333 4.532 c.2.1.4,c.23.12.1 71502,71503 1wwkA 307 4.547 1li4A 432 4.588 c.2.1.4,c.23.12.3 84616,84617 1mx3A 347 4.613 c.2.1.4,c.23.12.1 79638,79639 1ez4A 318 4.796 c.2.1.5,d.162.1.1 64917,64918 1lssA 140 4.917 c.2.1.9 74246 6ldhA 329 5.096 c.2.1.5,d.162.1.1 30161,42128 2p2sA 336 5.121 3ceaA 346 5.233 2ho3A 325 5.254 2o4cA 380 5.297 2eklA 313 5.484 1xdwA 331 5.646 1gpjA 404 5.756 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1h6dA 433 5.770 c.2.1.3,d.81.1.5 65656,65657 1omoA 322 5.849 c.2.1.13 104017 2i6tA 303 5.942 1dxy 333 6.006 2v7pA 310 6.177 2o4uX 334 6.332 1v8bA 479 6.372 c.2.1.4,c.23.12.3 113564,113565 1xeaA 323 6.388 c.2.1.3,d.81.1.5 109572,109573 1a5zA 319 6.489 c.2.1.5,d.162.1.1 30181,42148 2gcgA 330 6.807 1uxjA 309 6.887 c.2.1.5,d.162.1.1 108112,108113 1rydA 387 6.890 c.2.1.3,d.81.1.5 118801,118802 1tltA 319 7.058 c.2.1.3,d.81.1.5 107135,107136 3bioA 304 7.135 1drw 273 7.200 1ff9A 450 7.320 c.2.1.3,d.81.1.2 30039,39954 2pi1A 334 7.369 1dxyA 333 7.474 c.2.1.4,c.23.12.1 30094,31354 3c1aA 315 7.753 1sc6A 404 8.220 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1drwA 273 8.287 c.2.1.3,d.81.1.3 30057,39972 1nvmB 312 8.721 c.2.1.3,d.81.1.1 86251,86252 2cukA 311 8.728 2eggA 297 8.776 2glxA 332 8.893 1zh8A 340 9.176 c.2.1.3,d.81.1.5 125077,125078 1pjcA 361 9.242 c.2.1.4,c.23.12.2 30101,31361 2d0iA 333 10.06 1qp8A 303 10.61 c.2.1.4,c.23.12.1 30092,31352 2hk9A 275 11.16 1lsuA 147 11.21 c.2.1.9 74250 2g17A 337 11.76 c.2.1.3,d.81.1.1 134512,134513 2ixaA 444 11.92 2d5cA 263 12.53 2hjsA 340 12.92 c.2.1.3,d.81.1.1 136547,136548 2r6jA 318 13.10 1p77A 272 13.33 c.2.1.7,c.58.1.5 94214,94215 2nloA 302 14.17 2vhxA 377 14.66 1vknA 351 16.22 c.2.1.3,d.81.1.1 108676,108677 1lehA 364 16.24 c.2.1.7,c.58.1.1 30268,33916 2aefA 234 16.24 2hmvA 144 16.96 c.2.1.9 136615 2ejwA 332 17.02 2g76A 335 18.30 1x13A 401 18.70 2g1uA 155 18.79 2r00A 336 19.47 1yovA 537 19.83 c.111.1.2 123785 1j5pA 253 20.01 d.81.1.3,c.2.1.3 71577,83092 1nytA 271 20.33 c.2.1.7,c.58.1.5 86417,86418 2vojA 371 20.87 2q49A 359 21.73 c.2.1.3,d.81.1.1 139831,139832 1nvtA 287 22.51 c.2.1.7,c.58.1.5 86270,86271 2ph5A 480 22.93 1npyA 271 25.18 c.2.1.7,c.58.1.5 85995,85996 2cmd 312 25.33 1id1A 153 27.77 c.2.1.9 62286 2gz1A 366 27.89 c.2.1.3,d.81.1.1 135887,135888 1xgkA 352 28.45 c.2.1.2 115286 1sb8A 352 28.74 c.2.1.2 105410 1l7dA 384 28.80 c.2.1.4,c.23.12.2 77774,77775 1y81A 138 29.05 c.2.1.8 122731 1lc0A 294 29.70 c.2.1.3,d.81.1.4 73823,73824 1o6zA 303 29.73 c.2.1.5,d.162.1.1 81107,81108 2o7sA 523 29.81 2nqtA 352 30.95 3c85A 183 31.08 2c29D 337 31.86 1yqdA 366 32.66 1ys4A 354 33.32 2fk8A 318 33.78 c.66.1.18 133648 1y1pA 342 34.80 c.2.1.2 122550 2cmdA 312 35.66 c.2.1.5,d.162.1.1 30135,42102 1mldA 314 35.98 c.2.1.5,d.162.1.1 30122,42089 1vi2A 300 37.62 c.2.1.7,c.58.1.5 100726,100727 1lluA 342 38.82 b.35.1.2,c.2.1.1 91064,91065 1luaA 287 38.94 c.2.1.7,c.58.1.4 78216,78217 2d59A 144 40.86 c.2.1.8 131266 1hdoA 206 41.09 c.2.1.2 60965 2gasA 307 41.30 2pzmA 330 41.94 1iukA 140 42.04 c.2.1.8 83712 2gn4A 344 42.66 1ri5A 298 43.12 c.66.1.34 97502 2b69A 343 43.18 c.2.1.2 127974 1fl2A 310 43.29 c.3.1.5,c.3.1.5 59869,59870 1uufA 369 45.55 b.35.1.2,c.2.1.1 100006,100007 2cf5A 357 46.34 1nhsA 447 47.45 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2pk3A 321 48.63 2a35A 215 50.14 c.2.1.2 126072 1q7gA 359 50.71 c.2.1.3,d.81.1.2 96038,96039 1b7gO 340 51.10 c.2.1.3,d.81.1.1 29992,39907 1yxmA 303 51.33 c.2.1.2 124192 1oc2A 348 51.36 c.2.1.2 92765 1nhpA 447 51.62 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 3c8mA 331 54.55 2czcA 334 55.19 d.81.1.1 131044 2gdzA 267 56.18 c.2.1.2 135043 1kyqA 274 57.95 c.2.1.11,e.37.1.1 73281,73282 2exxA 306 58.35 1y8qA 346 58.46 1ebfA 358 58.60 c.2.1.3,d.81.1.2 30033,39948 2yqzA 263 59.36 4uagA 437 59.52 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2gptA 523 61.80 1c1dA 355 63.08 c.2.1.7,c.58.1.1 30270,33918 1i2cA 404 64.67 c.2.1.2 83666 1eq2A 310 65.14 c.2.1.2 29814 1xg5A 279 66.10 c.2.1.2 115277 1jw9B 249 66.37 c.111.1.1 67377 2ozpA 345 67.24 2bllA 345 68.12 c.2.1.2 128733 2z1mA 345 69.98 1y7tA 327 70.02 c.2.1.5,d.162.1.1 122718,122719 1xu9A 286 76.68 c.2.1.2 116052 3cc8A 230 77.02 1kpgA 287 77.20 c.66.1.18 68735 1z7bA 358 78.20 c.2.1.2 124599 2cduA 452 79.69 2bkaA 242 80.22 c.2.1.2 128666 2hcyA 347 80.67 1t2aA 375 80.77 c.2.1.2 99078 1rkxA 357 82.84 c.2.1.2 97631 1w4xA 542 85.84 c.3.1.5,c.3.1.5 109171,109172