# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.000425 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 0.000533 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 0.000557 1yqgA 263 0.000793 1yb4A 295 0.001011 2graA 277 0.001067 2cvzA 289 0.001228 a.100.1.1,c.2.1.6 130890,130891 2p4qA 497 0.001284 2h78A 302 0.001303 2rcyA 262 0.001471 2pgd 482 0.001633 2pgdA 482 0.001635 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 0.002532 a.100.1.12,c.2.1.6 132772,132773 3c24A 286 0.004102 1mv8A 436 0.004193 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2dpoA 319 0.004619 2ew2A 316 0.004802 2o3jA 481 0.006102 1np3A 338 0.006454 a.100.1.2,c.2.1.6 85946,85947 2g5cA 281 0.006633 a.100.1.12,c.2.1.6 134646,134647 1qmgA 524 0.007390 a.100.1.2,c.2.1.6 18785,30182 2pv7A 298 0.007957 2i76A 276 0.00996 1bg6A 359 0.01082 a.100.1.5,c.2.1.6 18810,30214 1i36A 264 0.01089 a.100.1.8,c.2.1.6 71108,71109 1evyA 366 0.01127 a.100.1.6,c.2.1.6 18811,30215 1yrlA 491 0.01223 1ks9A 291 0.01412 a.100.1.7,c.2.1.6 68857,68858 1z82A 335 0.01782 1dliA 402 0.02092 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1f0yA 302 0.02109 a.100.1.3,c.2.1.6 18793,30197 1x0vA 354 0.02286 1bg6 359 0.02388 2qytA 317 0.03183 1txgA 335 0.03316 a.100.1.6,c.2.1.6 112775,112776 1dljA 402 0.05125 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.05368 1zejA 293 0.05776 1jayA 212 0.07826 c.2.1.6 66478 1qv9A 283 0.1797 c.127.1.1 96356 1vjtA 483 0.6004 c.2.1.5,d.162.1.2 100833,100834 1obbA 480 0.8574 c.2.1.5,d.162.1.2 86760,86761 2axqA 467 0.9220 1s6yA 450 1.175 c.2.1.5,d.162.1.2 105314,105315 1guzA 310 1.295 c.2.1.5,d.162.1.1 65586,65587 2b0jA 358 1.351 a.100.1.11,c.2.1.6 127639,127640 1hyhA 309 1.694 c.2.1.5,d.162.1.1 30150,42117 1lldA 319 1.749 c.2.1.5,d.162.1.1 30177,42144 1pzgA 331 1.901 c.2.1.5,d.162.1.1 95425,95426 1ygyA 529 2.068 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1gdhA 320 2.132 c.2.1.4,c.23.12.1 30095,31355 1t2dA 322 2.169 c.2.1.5,d.162.1.1 99084,99085 2nacA 393 2.352 c.2.1.4,c.23.12.1 30088,31348 1f06A 320 2.393 c.2.1.3,d.81.1.3 59556,59557 1u8xX 472 2.401 c.2.1.5,d.162.1.2 107741,107742 2nvwA 479 2.639 c.2.1.3,d.81.1.5 138665,138666 2fssA 365 2.735 1up7A 417 2.779 c.2.1.5,d.162.1.2 113374,113375 2j6iA 364 2.811 2ewdA 317 2.941 1li4A 432 3.011 c.2.1.4,c.23.12.3 84616,84617 1x7dA 350 3.074 c.2.1.13 114927 1ez4A 318 3.222 c.2.1.5,d.162.1.1 64917,64918 2dbqA 334 3.297 1j4aA 333 3.397 c.2.1.4,c.23.12.1 71502,71503 2q4eA 362 3.439 1wwkA 307 3.448 1mx3A 347 3.533 c.2.1.4,c.23.12.1 79638,79639 2eklA 313 3.683 1lssA 140 3.709 c.2.1.9 74246 1xdwA 331 3.953 2i6tA 303 3.972 2dc1A 236 4.101 2v7pA 310 4.182 2p2sA 336 4.257 1v8bA 479 4.276 c.2.1.4,c.23.12.3 113564,113565 1gpjA 404 4.392 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 6ldhA 329 4.415 c.2.1.5,d.162.1.1 30161,42128 1tltA 319 4.451 c.2.1.3,d.81.1.5 107135,107136 1dxy 333 4.493 1xeaA 323 4.496 c.2.1.3,d.81.1.5 109572,109573 3ceaA 346 4.501 2o4cA 380 4.595 2o4uX 334 4.654 2gcgA 330 4.669 1h6dA 433 4.695 c.2.1.3,d.81.1.5 65656,65657 2ho3A 325 4.700 1a5zA 319 4.861 c.2.1.5,d.162.1.1 30181,42148 1uxjA 309 4.889 c.2.1.5,d.162.1.1 108112,108113 1omoA 322 4.912 c.2.1.13 104017 1ff9A 450 5.241 c.2.1.3,d.81.1.2 30039,39954 1drw 273 5.290 1dxyA 333 5.370 c.2.1.4,c.23.12.1 30094,31354 2pi1A 334 5.628 2cukA 311 5.703 3bioA 304 5.787 1drwA 273 5.788 c.2.1.3,d.81.1.3 30057,39972 2eggA 297 6.027 3c1aA 315 6.303 1rydA 387 6.694 c.2.1.3,d.81.1.5 118801,118802 1sc6A 404 6.736 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1qp8A 303 7.047 c.2.1.4,c.23.12.1 30092,31352 2hk9A 275 7.166 2d0iA 333 7.360 2glxA 332 8.020 1pjcA 361 8.043 c.2.1.4,c.23.12.2 30101,31361 1zh8A 340 8.577 c.2.1.3,d.81.1.5 125077,125078 1nvmB 312 8.844 c.2.1.3,d.81.1.1 86251,86252 1lsuA 147 9.295 c.2.1.9 74250 2nloA 302 9.707 2hjsA 340 9.726 c.2.1.3,d.81.1.1 136547,136548 1p77A 272 10.15 c.2.1.7,c.58.1.5 94214,94215 2r6jA 318 10.41 2ixaA 444 11.18 2g17A 337 11.29 c.2.1.3,d.81.1.1 134512,134513 2g76A 335 11.35 2d5cA 263 12.17 1vknA 351 13.08 c.2.1.3,d.81.1.1 108676,108677 2hmvA 144 13.42 c.2.1.9 136615 1j5pA 253 13.81 d.81.1.3,c.2.1.3 71577,83092 2g1uA 155 13.94 2vhxA 377 14.04 2aefA 234 14.12 1lehA 364 15.22 c.2.1.7,c.58.1.1 30268,33916 1nvtA 287 15.64 c.2.1.7,c.58.1.5 86270,86271 2ejwA 332 15.72 2r00A 336 16.65 1nytA 271 16.96 c.2.1.7,c.58.1.5 86417,86418 1y81A 138 17.19 c.2.1.8 122731 1x13A 401 18.31 2q49A 359 19.13 c.2.1.3,d.81.1.1 139831,139832 2gz1A 366 19.21 c.2.1.3,d.81.1.1 135887,135888 2nqtA 352 19.22 2cmd 312 19.37 1id1A 153 19.83 c.2.1.9 62286 1yovA 537 19.92 c.111.1.2 123785 2ph5A 480 21.68 2vojA 371 22.17 3c85A 183 23.12 1o6zA 303 23.20 c.2.1.5,d.162.1.1 81107,81108 2o7sA 523 23.47 1sb8A 352 24.53 c.2.1.2 105410 2d59A 144 25.76 c.2.1.8 131266 1npyA 271 26.04 c.2.1.7,c.58.1.5 85995,85996 2fk8A 318 26.13 c.66.1.18 133648 1iukA 140 26.20 c.2.1.8 83712 1xgkA 352 27.19 c.2.1.2 115286 1mldA 314 27.89 c.2.1.5,d.162.1.1 30122,42089 1ys4A 354 28.32 1y1pA 342 28.44 c.2.1.2 122550 1l7dA 384 28.68 c.2.1.4,c.23.12.2 77774,77775 1yqdA 366 29.41 2cmdA 312 29.83 c.2.1.5,d.162.1.1 30135,42102 1lc0A 294 30.09 c.2.1.3,d.81.1.4 73823,73824 1hdoA 206 30.33 c.2.1.2 60965 2gn4A 344 31.44 2cf5A 357 31.77 2c29D 337 31.78 2pzmA 330 32.56 1ri5A 298 34.06 c.66.1.34 97502 1q7gA 359 34.39 c.2.1.3,d.81.1.2 96038,96039 1vi2A 300 36.62 c.2.1.7,c.58.1.5 100726,100727 1lluA 342 36.64 b.35.1.2,c.2.1.1 91064,91065 2b69A 343 37.54 c.2.1.2 127974 2pk3A 321 38.86 2a35A 215 39.55 c.2.1.2 126072 1ebfA 358 40.85 c.2.1.3,d.81.1.2 30033,39948 1luaA 287 41.19 c.2.1.7,c.58.1.4 78216,78217 1uufA 369 41.49 b.35.1.2,c.2.1.1 100006,100007 2gasA 307 43.33 1oc2A 348 44.13 c.2.1.2 92765 1fl2A 310 44.15 c.3.1.5,c.3.1.5 59869,59870 1nhsA 447 44.98 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1b7gO 340 45.71 c.2.1.3,d.81.1.1 29992,39907 1nhpA 447 46.63 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2czcA 334 47.09 d.81.1.1 131044 2gptA 523 47.44 4uagA 437 47.78 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 1c1dA 355 47.91 c.2.1.7,c.58.1.1 30270,33918 1kyqA 274 49.68 c.2.1.11,e.37.1.1 73281,73282 2exxA 306 51.67 2ozpA 345 52.64 3c8mA 331 53.10 1kpgA 287 53.50 c.66.1.18 68735 1y8qA 346 53.67 3cc8A 230 54.47 2bkaA 242 54.70 c.2.1.2 128666 2yqzA 263 54.76 1yxmA 303 55.59 c.2.1.2 124192 2bllA 345 58.68 c.2.1.2 128733 1y7tA 327 60.68 c.2.1.5,d.162.1.1 122718,122719 2z1mA 345 64.80 2cduA 452 65.75 2gdzA 267 66.29 c.2.1.2 135043 1t4bA 367 66.73 c.2.1.3,d.81.1.1 106406,106407 1i2cA 404 66.84 c.2.1.2 83666 1xu9A 286 66.94 c.2.1.2 116052 1z7bA 358 67.74 c.2.1.2 124599 1xg5A 279 67.81 c.2.1.2 115277 1xq6A 253 68.44 c.2.1.2 115829 1z45A 699 68.72 b.30.5.4,c.2.1.2 124427,124428 2gqwA 408 68.84 1w4xA 542 68.99 c.3.1.5,c.3.1.5 109171,109172 1rkxA 357 69.11 c.2.1.2 97631 1l1eA 287 69.77 c.66.1.18 73454 1t2aA 375 71.77 c.2.1.2 99078 2p4hX 322 71.88 1bdmA 327 72.34 c.2.1.5,d.162.1.1 30137,42104 1jw9B 249 73.50 c.111.1.1 67377 2q1sA 377 77.80 2q46A 253 78.13 c.2.1.2 139825 1wmaA 276 81.72 c.2.1.2 121042 2dm6A 333 85.10 b.35.1.2,c.2.1.1 131567,131568 1hyeA 313 85.32 c.2.1.5,d.162.1.1 61400,61401 1b6rA 355 86.18 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 1q1rA 431 86.84 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2blnA 305 87.65 b.46.1.1,c.65.1.1 128734,128735 2hcyA 347 87.70 1m6iA 493 89.24 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535