# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.005276 a.100.1.1,c.2.1.6 113951,113952 1yb4A 295 0.008580 2h78A 302 0.009764 2izzA 322 0.01110 2p4qA 497 0.01127 2pgd 482 0.01210 2pgdA 482 0.01269 a.100.1.1,c.2.1.6 18778,30190 2cvzA 289 0.01416 a.100.1.1,c.2.1.6 130890,130891 2ahrA 259 0.01620 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 0.02145 2graA 277 0.02268 2f1kA 279 0.02695 a.100.1.12,c.2.1.6 132772,132773 2ew2A 316 0.02863 2rcyA 262 0.03061 1evyA 366 0.03159 a.100.1.6,c.2.1.6 18811,30215 2o3jA 481 0.06126 1ks9A 291 0.07355 a.100.1.7,c.2.1.6 68857,68858 1x0vA 354 0.07606 2dpoA 319 0.08060 1np3A 338 0.08717 a.100.1.2,c.2.1.6 85946,85947 1bg6 359 0.08829 1bg6A 359 0.08860 a.100.1.5,c.2.1.6 18810,30214 3c24A 286 0.08968 2g5cA 281 0.09304 a.100.1.12,c.2.1.6 134646,134647 1yrlA 491 0.09817 2pv7A 298 0.09888 1z82A 335 0.1048 1i36A 264 0.1144 a.100.1.8,c.2.1.6 71108,71109 1mv8A 436 0.1201 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1f0yA 302 0.1204 a.100.1.3,c.2.1.6 18793,30197 2qytA 317 0.1223 1txgA 335 0.1294 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 0.1531 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2i76A 276 0.1883 1dljA 402 0.2003 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1qmgA 524 0.2214 a.100.1.2,c.2.1.6 18785,30182 1zcjA 463 0.3056 1zejA 293 0.3872 1jayA 212 0.4727 c.2.1.6 66478 2axqA 467 1.903 1qv9A 283 3.122 c.127.1.1 96356 2nvwA 479 4.039 c.2.1.3,d.81.1.5 138665,138666 1ygyA 529 4.216 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1li4A 432 4.504 c.2.1.4,c.23.12.3 84616,84617 1f06A 320 4.517 c.2.1.3,d.81.1.3 59556,59557 1gdhA 320 4.797 c.2.1.4,c.23.12.1 30095,31355 3ceaA 346 4.861 1x7dA 350 4.904 c.2.1.13 114927 1pzgA 331 4.936 c.2.1.5,d.162.1.1 95425,95426 1t2dA 322 4.991 c.2.1.5,d.162.1.1 99084,99085 1guzA 310 5.045 c.2.1.5,d.162.1.1 65586,65587 1obbA 480 5.159 c.2.1.5,d.162.1.2 86760,86761 2q4eA 362 5.208 1omoA 322 5.252 c.2.1.13 104017 2dbqA 334 5.317 1mx3A 347 5.333 c.2.1.4,c.23.12.1 79638,79639 2o4uX 334 5.764 2fssA 365 5.915 2eklA 313 6.272 1h6dA 433 6.333 c.2.1.3,d.81.1.5 65656,65657 2p2sA 336 6.398 2gcgA 330 6.511 1vjtA 483 6.521 c.2.1.5,d.162.1.2 100833,100834 1xdwA 331 6.546 1wwkA 307 6.626 1drw 273 6.682 2glxA 332 6.732 1dxy 333 6.738 2dc1A 236 7.000 1u8xX 472 7.185 c.2.1.5,d.162.1.2 107741,107742 1hyhA 309 7.304 c.2.1.5,d.162.1.1 30150,42117 1tltA 319 7.334 c.2.1.3,d.81.1.5 107135,107136 1uxjA 309 7.335 c.2.1.5,d.162.1.1 108112,108113 2ewdA 317 7.690 2nacA 393 7.888 c.2.1.4,c.23.12.1 30088,31348 1ez4A 318 8.011 c.2.1.5,d.162.1.1 64917,64918 2b0jA 358 8.168 a.100.1.11,c.2.1.6 127639,127640 2j6iA 364 8.429 2d0iA 333 8.758 1v8bA 479 8.975 c.2.1.4,c.23.12.3 113564,113565 1rydA 387 9.041 c.2.1.3,d.81.1.5 118801,118802 2v7pA 310 9.042 2pi1A 334 9.080 1s6yA 450 9.119 c.2.1.5,d.162.1.2 105314,105315 2g17A 337 9.354 c.2.1.3,d.81.1.1 134512,134513 2g76A 335 9.381 2ho3A 325 9.408 2i6tA 303 9.435 1xeaA 323 9.460 c.2.1.3,d.81.1.5 109572,109573 6ldhA 329 9.763 c.2.1.5,d.162.1.1 30161,42128 2ejwA 332 10.13 1nvmB 312 10.17 c.2.1.3,d.81.1.1 86251,86252 2o4cA 380 10.20 3c1aA 315 10.25 2ixaA 444 10.58 2eggA 297 10.64 1pjcA 361 10.68 c.2.1.4,c.23.12.2 30101,31361 1j4aA 333 10.79 c.2.1.4,c.23.12.1 71502,71503 1dxyA 333 10.93 c.2.1.4,c.23.12.1 30094,31354 1drwA 273 11.06 c.2.1.3,d.81.1.3 30057,39972 1sc6A 404 11.40 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1zh8A 340 11.70 c.2.1.3,d.81.1.5 125077,125078 1up7A 417 11.78 c.2.1.5,d.162.1.2 113374,113375 1qp8A 303 12.59 c.2.1.4,c.23.12.1 30092,31352 2vojA 371 13.19 1ff9A 450 13.24 c.2.1.3,d.81.1.2 30039,39954 2vhxA 377 13.31 2hk9A 275 13.33 1lldA 319 13.37 c.2.1.5,d.162.1.1 30177,42144 2cukA 311 13.62 1nytA 271 13.77 c.2.1.7,c.58.1.5 86417,86418 2r6jA 318 13.98 2hjsA 340 15.88 c.2.1.3,d.81.1.1 136547,136548 2nloA 302 16.56 1p77A 272 16.57 c.2.1.7,c.58.1.5 94214,94215 1gpjA 404 17.40 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2ph5A 480 18.91 1luaA 287 19.35 c.2.1.7,c.58.1.4 78216,78217 2q49A 359 19.94 c.2.1.3,d.81.1.1 139831,139832 1ys4A 354 20.27 2r00A 336 20.92 2d5cA 263 21.33 1x13A 401 21.42 1vknA 351 22.09 c.2.1.3,d.81.1.1 108676,108677 2pzmA 330 23.08 1j5pA 253 23.95 d.81.1.3,c.2.1.3 71577,83092 1lehA 364 24.73 c.2.1.7,c.58.1.1 30268,33916 1lssA 140 25.01 c.2.1.9 74246 2gasA 307 25.28 1a5zA 319 25.38 c.2.1.5,d.162.1.1 30181,42148 1q7gA 359 27.30 c.2.1.3,d.81.1.2 96038,96039 3bioA 304 27.33 1vi2A 300 27.36 c.2.1.7,c.58.1.5 100726,100727 2nqtA 352 28.35 1nvtA 287 28.92 c.2.1.7,c.58.1.5 86270,86271 2gz1A 366 29.34 c.2.1.3,d.81.1.1 135887,135888 1xgkA 352 31.16 c.2.1.2 115286 1z7bA 358 32.78 c.2.1.2 124599 1lc0A 294 33.90 c.2.1.3,d.81.1.4 73823,73824 2cmd 312 36.33 1m6iA 493 36.72 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2o7sA 523 37.77 1o6zA 303 38.09 c.2.1.5,d.162.1.1 81107,81108 2bllA 345 42.22 c.2.1.2 128733 1npyA 271 42.23 c.2.1.7,c.58.1.5 85995,85996 2gn4A 344 42.74 1sb8A 352 44.16 c.2.1.2 105410 1l7dA 384 44.55 c.2.1.4,c.23.12.2 77774,77775 2g1uA 155 45.11 2q1sA 377 45.11 2c29D 337 45.38 1mldA 314 45.63 c.2.1.5,d.162.1.1 30122,42089 2cmdA 312 46.80 c.2.1.5,d.162.1.1 30135,42102 1ebfA 358 46.91 c.2.1.3,d.81.1.2 30033,39948 2exxA 306 48.34 2a35A 215 49.03 c.2.1.2 126072 1y1pA 342 51.00 c.2.1.2 122550 2p4hX 322 51.31 1lsuA 147 52.93 c.2.1.9 74250 2c5aA 379 55.97 c.2.1.2 129894 2gptA 523 57.33 2czcA 334 59.46 d.81.1.1 131044 1b7gO 340 59.82 c.2.1.3,d.81.1.1 29992,39907 2hmvA 144 60.76 c.2.1.9 136615 2aefA 234 60.90 2yyyA 343 62.54 2pk3A 321 62.65 2bkaA 242 63.52 c.2.1.2 128666 1yovA 537 64.84 c.111.1.2 123785 1wmaA 276 65.02 c.2.1.2 121042 1fl2A 310 66.44 c.3.1.5,c.3.1.5 59869,59870 1yxmA 303 66.52 c.2.1.2 124192 1vl5A 260 67.40 c.66.1.41 108720 1q1rA 431 70.37 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1hdoA 206 73.11 c.2.1.2 60965 1c1dA 355 73.70 c.2.1.7,c.58.1.1 30270,33918 2z1mA 345 74.18 2gdzA 267 74.63 c.2.1.2 135043 2ozpA 345 74.71 1id1A 153 75.03 c.2.1.9 62286 3grs 478 75.87 3c85A 183 76.34 1xu9A 286 77.20 c.2.1.2 116052 2p5yA 311 77.69 1bdmA 327 78.31 c.2.1.5,d.162.1.1 30137,42104 2gqwA 408 78.79 2cf5A 357 79.55 3c8mA 331 80.01 1y8qA 346 83.20 1rkxA 357 84.68 c.2.1.2 97631 1oc2A 348 84.76 c.2.1.2 92765 1bdb 277 84.83