# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 0.004943 a.100.1.1,c.2.1.6 113951,113952 2izzA 322 0.005556 2ahrA 259 0.007613 a.100.1.10,c.2.1.6 126775,126776 1yb4A 295 0.008165 2pgd 482 0.008205 1yqgA 263 0.008222 2p4qA 497 0.009425 2h78A 302 0.01057 2cvzA 289 0.01101 a.100.1.1,c.2.1.6 130890,130891 2pgdA 482 0.01167 a.100.1.1,c.2.1.6 18778,30190 2graA 277 0.01189 2rcyA 262 0.01691 2f1kA 279 0.01707 a.100.1.12,c.2.1.6 132772,132773 2dpoA 319 0.03943 2ew2A 316 0.04021 2g5cA 281 0.05153 a.100.1.12,c.2.1.6 134646,134647 1evyA 366 0.05279 a.100.1.6,c.2.1.6 18811,30215 3c24A 286 0.05416 2pv7A 298 0.05551 2o3jA 481 0.05643 1qmgA 524 0.05750 a.100.1.2,c.2.1.6 18785,30182 1mv8A 436 0.05902 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2i76A 276 0.05977 1np3A 338 0.07039 a.100.1.2,c.2.1.6 85946,85947 1bg6A 359 0.07565 a.100.1.5,c.2.1.6 18810,30214 1ks9A 291 0.07784 a.100.1.7,c.2.1.6 68857,68858 1z82A 335 0.07834 1x0vA 354 0.07983 1yrlA 491 0.08062 1bg6 359 0.09004 1i36A 264 0.1084 a.100.1.8,c.2.1.6 71108,71109 1txgA 335 0.1134 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 0.1180 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1f0yA 302 0.1231 a.100.1.3,c.2.1.6 18793,30197 1dljA 402 0.1279 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 2qytA 317 0.1810 1zcjA 463 0.2556 1zejA 293 0.2982 1jayA 212 0.4495 c.2.1.6 66478 1qv9A 283 1.340 c.127.1.1 96356 2axqA 467 2.028 1vjtA 483 2.954 c.2.1.5,d.162.1.2 100833,100834 2ewdA 317 3.464 1hyhA 309 3.480 c.2.1.5,d.162.1.1 30150,42117 1pzgA 331 3.549 c.2.1.5,d.162.1.1 95425,95426 1guzA 310 3.685 c.2.1.5,d.162.1.1 65586,65587 1s6yA 450 3.899 c.2.1.5,d.162.1.2 105314,105315 1lldA 319 3.931 c.2.1.5,d.162.1.1 30177,42144 1x7dA 350 4.094 c.2.1.13 114927 1f06A 320 4.104 c.2.1.3,d.81.1.3 59556,59557 1t2dA 322 4.525 c.2.1.5,d.162.1.1 99084,99085 1obbA 480 4.651 c.2.1.5,d.162.1.2 86760,86761 1ygyA 529 5.415 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1u8xX 472 5.777 c.2.1.5,d.162.1.2 107741,107742 1uxjA 309 5.813 c.2.1.5,d.162.1.1 108112,108113 2j6iA 364 6.215 2o4uX 334 6.256 2q4eA 362 6.296 2b0jA 358 6.426 a.100.1.11,c.2.1.6 127639,127640 6ldhA 329 6.603 c.2.1.5,d.162.1.1 30161,42128 2fssA 365 6.640 1up7A 417 6.984 c.2.1.5,d.162.1.2 113374,113375 2i6tA 303 7.091 1omoA 322 7.267 c.2.1.13 104017 2dbqA 334 7.467 1gdhA 320 7.530 c.2.1.4,c.23.12.1 30095,31355 2p2sA 336 7.939 1mx3A 347 7.957 c.2.1.4,c.23.12.1 79638,79639 2nvwA 479 7.959 c.2.1.3,d.81.1.5 138665,138666 2eklA 313 7.975 1tltA 319 8.104 c.2.1.3,d.81.1.5 107135,107136 2gcgA 330 8.199 3ceaA 346 8.231 1wwkA 307 8.342 2dc1A 236 8.549 1drw 273 9.157 1h6dA 433 9.400 c.2.1.3,d.81.1.5 65656,65657 2eggA 297 9.808 1nvmB 312 9.826 c.2.1.3,d.81.1.1 86251,86252 1dxy 333 10.07 1ff9A 450 10.38 c.2.1.3,d.81.1.2 30039,39954 1li4A 432 10.52 c.2.1.4,c.23.12.3 84616,84617 3c1aA 315 10.73 2ho3A 325 10.95 1ez4A 318 10.97 c.2.1.5,d.162.1.1 64917,64918 1xdwA 331 11.15 2o4cA 380 11.24 1pjcA 361 11.26 c.2.1.4,c.23.12.2 30101,31361 2glxA 332 11.35 1a5zA 319 11.69 c.2.1.5,d.162.1.1 30181,42148 2d0iA 333 12.03 2pi1A 334 12.04 2r6jA 318 12.07 1xeaA 323 12.17 c.2.1.3,d.81.1.5 109572,109573 2g76A 335 12.21 2v7pA 310 12.48 1rydA 387 12.48 c.2.1.3,d.81.1.5 118801,118802 1v8bA 479 12.50 c.2.1.4,c.23.12.3 113564,113565 2hk9A 275 12.51 2hjsA 340 12.60 c.2.1.3,d.81.1.1 136547,136548 2nacA 393 12.74 c.2.1.4,c.23.12.1 30088,31348 1p77A 272 13.70 c.2.1.7,c.58.1.5 94214,94215 1zh8A 340 14.66 c.2.1.3,d.81.1.5 125077,125078 1dxyA 333 14.98 c.2.1.4,c.23.12.1 30094,31354 1j4aA 333 15.12 c.2.1.4,c.23.12.1 71502,71503 1j5pA 253 15.48 d.81.1.3,c.2.1.3 71577,83092 1drwA 273 16.07 c.2.1.3,d.81.1.3 30057,39972 2d5cA 263 16.08 1nytA 271 16.08 c.2.1.7,c.58.1.5 86417,86418 2cukA 311 16.16 3bioA 304 16.18 2vhxA 377 17.15 2ixaA 444 17.66 1lssA 140 17.70 c.2.1.9 74246 1vi2A 300 17.97 c.2.1.7,c.58.1.5 100726,100727 2vojA 371 18.31 2g17A 337 18.61 c.2.1.3,d.81.1.1 134512,134513 2r00A 336 18.75 1gpjA 404 18.92 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2nloA 302 19.26 1vknA 351 19.71 c.2.1.3,d.81.1.1 108676,108677 1qp8A 303 19.97 c.2.1.4,c.23.12.1 30092,31352 2cmd 312 20.88 1luaA 287 21.54 c.2.1.7,c.58.1.4 78216,78217 1nvtA 287 22.34 c.2.1.7,c.58.1.5 86270,86271 1sc6A 404 22.74 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1lehA 364 23.43 c.2.1.7,c.58.1.1 30268,33916 2ejwA 332 23.98 2gz1A 366 25.74 c.2.1.3,d.81.1.1 135887,135888 2b69A 343 26.16 c.2.1.2 127974 2q49A 359 27.05 c.2.1.3,d.81.1.1 139831,139832 1y1pA 342 27.18 c.2.1.2 122550 2ph5A 480 27.25 2nqtA 352 27.69 1ys4A 354 27.83 2aefA 234 30.21 1z7bA 358 30.43 c.2.1.2 124599 1xgkA 352 30.88 c.2.1.2 115286 1x13A 401 31.94 2pzmA 330 32.11 1lc0A 294 32.20 c.2.1.3,d.81.1.4 73823,73824 2cmdA 312 32.35 c.2.1.5,d.162.1.1 30135,42102 2bllA 345 32.79 c.2.1.2 128733 1o6zA 303 34.12 c.2.1.5,d.162.1.1 81107,81108 1oc2A 348 34.22 c.2.1.2 92765 1lsuA 147 34.60 c.2.1.9 74250 2gasA 307 36.34 1mldA 314 37.43 c.2.1.5,d.162.1.1 30122,42089 2o7sA 523 37.63 1wmaA 276 37.78 c.2.1.2 121042 1yovA 537 39.86 c.111.1.2 123785 2hmvA 144 41.19 c.2.1.9 136615 1sb8A 352 41.32 c.2.1.2 105410 3c8mA 331 41.88 1hdoA 206 43.16 c.2.1.2 60965 1q7gA 359 44.01 c.2.1.3,d.81.1.2 96038,96039 2exxA 306 45.72 1y81A 138 46.78 c.2.1.8 122731 2fk8A 318 47.41 c.66.1.18 133648 1c1dA 355 48.01 c.2.1.7,c.58.1.1 30270,33918 1wvgA 359 48.14 c.2.1.2 121339 2q1sA 377 48.29 2gn4A 344 50.75 2g1uA 155 50.99 1npyA 271 51.47 c.2.1.7,c.58.1.5 85995,85996 2gqwA 408 53.21 1id1A 153 53.27 c.2.1.9 62286 1rkxA 357 54.28 c.2.1.2 97631 2p4hX 322 54.70 2c29D 337 55.17 2czcA 334 57.27 d.81.1.1 131044 2p5yA 311 57.34 2pk3A 321 59.05 2gdzA 267 59.07 c.2.1.2 135043 1xu9A 286 59.11 c.2.1.2 116052 1yxmA 303 60.22 c.2.1.2 124192 2yquA 455 60.37 2gptA 523 65.32 1y8qA 346 65.71 2bkaA 242 66.31 c.2.1.2 128666 2d59A 144 67.01 c.2.1.8 131266 1l7dA 384 68.06 c.2.1.4,c.23.12.2 77774,77775 1xq6A 253 68.17 c.2.1.2 115829 1fl2A 310 70.67 c.3.1.5,c.3.1.5 59869,59870 1m6iA 493 72.31 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2yyyA 343 72.45 2z1mA 345 72.53 2q46A 253 73.03 c.2.1.2 139825 3c85A 183 75.43 1iukA 140 75.68 c.2.1.8 83712 1q1rA 431 79.19 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1t4bA 367 80.38 c.2.1.3,d.81.1.1 106406,106407 1b7gO 340 81.81 c.2.1.3,d.81.1.1 29992,39907 2c5aA 379 82.14 c.2.1.2 129894 2ozpA 345 85.65