# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2ahrA 259 1.401 a.100.1.10,c.2.1.6 126775,126776 1vpdA 299 1.442 a.100.1.1,c.2.1.6 113951,113952 2h78A 302 1.493 2izzA 322 1.645 1yqgA 263 1.755 2f1kA 279 1.778 a.100.1.12,c.2.1.6 132772,132773 2p4qA 497 1.854 2cvzA 289 2.218 a.100.1.1,c.2.1.6 130890,130891 2g5cA 281 2.272 a.100.1.12,c.2.1.6 134646,134647 1yb4A 295 2.483 1f0yA 302 2.547 a.100.1.3,c.2.1.6 18793,30197 2ew2A 316 2.552 1evyA 366 2.661 a.100.1.6,c.2.1.6 18811,30215 2rcyA 262 2.844 2graA 277 3.008 3c24A 286 3.034 2pgd 482 3.110 2dpoA 319 3.125 1yrlA 491 3.535 1bg6A 359 3.552 a.100.1.5,c.2.1.6 18810,30214 2pgdA 482 3.768 a.100.1.1,c.2.1.6 18778,30190 1x0vA 354 4.358 2pv7A 298 4.604 1mv8A 436 4.614 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1np3A 338 4.921 a.100.1.2,c.2.1.6 85946,85947 1zcjA 463 5.288 1z82A 335 5.527 1bg6 359 5.989 1ks9A 291 6.077 a.100.1.7,c.2.1.6 68857,68858 1i36A 264 6.338 a.100.1.8,c.2.1.6 71108,71109 2qytA 317 6.389 1zejA 293 6.848 1txgA 335 7.847 a.100.1.6,c.2.1.6 112775,112776 1dliA 402 7.989 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 2i76A 276 8.295 1dljA 402 8.664 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1qmgA 524 8.745 a.100.1.2,c.2.1.6 18785,30182 2o3jA 481 9.006 1jayA 212 12.19 c.2.1.6 66478 1pzgA 331 16.89 c.2.1.5,d.162.1.1 95425,95426 2v7pA 310 19.56 2nvwA 479 20.55 c.2.1.3,d.81.1.5 138665,138666 1t2dA 322 20.81 c.2.1.5,d.162.1.1 99084,99085 1uxjA 309 21.51 c.2.1.5,d.162.1.1 108112,108113 1ez4A 318 21.79 c.2.1.5,d.162.1.1 64917,64918 3ceaA 346 21.96 1lldA 319 22.40 c.2.1.5,d.162.1.1 30177,42144 1a5zA 319 23.19 c.2.1.5,d.162.1.1 30181,42148 2axqA 467 23.80 1hyhA 309 25.01 c.2.1.5,d.162.1.1 30150,42117 2i6tA 303 26.29 1up7A 417 26.29 c.2.1.5,d.162.1.2 113374,113375 6ldhA 329 27.28 c.2.1.5,d.162.1.1 30161,42128 2ewdA 317 27.86 1nvmB 312 28.25 c.2.1.3,d.81.1.1 86251,86252 1guzA 310 29.17 c.2.1.5,d.162.1.1 65586,65587 1obbA 480 29.63 c.2.1.5,d.162.1.2 86760,86761 2o4uX 334 30.27 1u8xX 472 31.85 c.2.1.5,d.162.1.2 107741,107742 1s6yA 450 33.42 c.2.1.5,d.162.1.2 105314,105315 1vjtA 483 34.59 c.2.1.5,d.162.1.2 100833,100834 1li4A 432 34.80 c.2.1.4,c.23.12.3 84616,84617 2q4eA 362 35.19 2yyyA 343 35.29 2hk9A 275 37.38 2nacA 393 39.73 c.2.1.4,c.23.12.1 30088,31348 1h6dA 433 39.96 c.2.1.3,d.81.1.5 65656,65657 2glxA 332 40.53 1v8bA 479 40.62 c.2.1.4,c.23.12.3 113564,113565 2cmdA 312 43.23 c.2.1.5,d.162.1.1 30135,42102 2ho3A 325 44.81 1nytA 271 45.64 c.2.1.7,c.58.1.5 86417,86418 1zh8A 340 47.18 c.2.1.3,d.81.1.5 125077,125078 1o6zA 303 48.59 c.2.1.5,d.162.1.1 81107,81108 2gn4A 344 50.17 2cmd 312 50.35 2b0jA 358 51.19 a.100.1.11,c.2.1.6 127639,127640 1xeaA 323 51.38 c.2.1.3,d.81.1.5 109572,109573 1ff9A 450 52.62 c.2.1.3,d.81.1.2 30039,39954 1y7tA 327 52.91 c.2.1.5,d.162.1.1 122718,122719 1ygyA 529 53.29 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1xgkA 352 53.67 c.2.1.2 115286 2g76A 335 55.66 1c1dA 355 56.57 c.2.1.7,c.58.1.1 30270,33918 1bdmA 327 57.45 c.2.1.5,d.162.1.1 30137,42104 1x7dA 350 57.70 c.2.1.13 114927 2g17A 337 58.19 c.2.1.3,d.81.1.1 134512,134513 1rydA 387 59.56 c.2.1.3,d.81.1.5 118801,118802 2d5cA 263 59.98 1mldA 314 60.45 c.2.1.5,d.162.1.1 30122,42089 2ejwA 332 61.82 1mx3A 347 62.73 c.2.1.4,c.23.12.1 79638,79639 1lehA 364 62.78 c.2.1.7,c.58.1.1 30268,33916 1wwkA 307 62.97 2exxA 306 63.66 2a4kA 263 66.18 c.2.1.2 126156 2hjsA 340 68.50 c.2.1.3,d.81.1.1 136547,136548 3cgvA 397 69.99 2fk8A 318 70.99 c.66.1.18 133648 2fssA 365 71.23 2eklA 313 71.59 1vknA 351 72.27 c.2.1.3,d.81.1.1 108676,108677 1gdhA 320 72.72 c.2.1.4,c.23.12.1 30095,31355 1k0iA 394 74.87 c.3.1.2,d.16.1.2 67942,67943 1sc6A 404 74.90 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2eggA 297 75.89 2p2sA 336 78.78 2vojA 371 79.12 1drw 273 81.74 2o4cA 380 82.06 1lssA 140 83.75 c.2.1.9 74246 1l7dA 384 85.54 c.2.1.4,c.23.12.2 77774,77775 1y1pA 342 86.10 c.2.1.2 122550 2q49A 359 87.65 c.2.1.3,d.81.1.1 139831,139832 1b7gO 340 88.75 c.2.1.3,d.81.1.1 29992,39907 1pjcA 361 89.82 c.2.1.4,c.23.12.2 30101,31361