# List of top-scoring protein chains for T0393.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1vpdA 299 1.31e-13 a.100.1.1,c.2.1.6 113951,113952 3cumA 302 3.87e-13 2gf2A 296 4.91e-13 2i9pA 319 5.01e-13 1yb4A 295 4.47e-12 2uyyA 316 1.76e-11 2cvzA 289 4.54e-11 a.100.1.1,c.2.1.6 130890,130891 2izzA 322 7.92e-11 2rcyA 262 8.59e-11 2graA 277 9.00e-11 2gerA 321 9.67e-11 2ahrA 259 1.13e-09 a.100.1.10,c.2.1.6 126775,126776 1yqgA 263 1.30e-09 2iz1A 474 3.10e-06 2iypA 473 3.25e-06 2iyoA 472 3.44e-06 2p4qA 497 3.57e-06 2pgdA 482 9.94e-06 a.100.1.1,c.2.1.6 18778,30190 1pgjA 478 2.29e-05 a.100.1.1,c.2.1.6 18783,30195 2f1kA 279 0.000750 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 0.001230 a.100.1.12,c.2.1.6 134646,134647 3c24A 286 0.01461 1i36A 264 0.01645 a.100.1.8,c.2.1.6 71108,71109 2i76A 276 0.01842 1zejA 293 0.04251 2pv7A 298 0.1520 2ew2A 316 0.1647 2dbqA 334 0.3219 2gcgA 330 0.4263 2q50A 328 0.4264 1yrlA 491 0.4889 2b0jA 358 0.7208 a.100.1.11,c.2.1.6 127639,127640 1x0vA 354 0.7959 1jayA 212 0.8560 c.2.1.6 66478 1mv8A 436 1.086 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2d0iA 333 1.147 1wpqA 349 1.237 2hk8A 269 1.351 2hk9A 275 1.352 2ofpA 320 1.352 a.100.1.7,c.2.1.6 139052,139053 1bg6A 359 1.743 a.100.1.5,c.2.1.6 18810,30214 1np3A 338 2.003 a.100.1.2,c.2.1.6 85946,85947 1yonA 303 2.060 a.100.1.7,c.2.1.6 123780,123781 1ks9A 291 2.080 a.100.1.7,c.2.1.6 68857,68858 2j6iA 364 2.171 2fssA 365 2.280 1txgA 335 2.395 a.100.1.6,c.2.1.6 112775,112776 1hkuA 358 2.405 c.2.1.4,c.23.12.1 83557,83558 1mx3A 347 2.584 c.2.1.4,c.23.12.1 79638,79639 2pi1A 334 2.654 2rirA 300 3.632 2rafA 209 3.661 1gpjA 404 3.847 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1j4aA 333 4.169 c.2.1.4,c.23.12.1 71502,71503 1wwkA 307 4.522 2p9gA 410 4.601 c.2.1.4,c.23.12.1,d.58.18.1 139574,139575,139576 2dldA 337 4.624 c.2.1.4,c.23.12.1 30099,31359 1j49A 333 4.690 c.2.1.4,c.23.12.1 71498,71499 1evyA 366 4.703 a.100.1.6,c.2.1.6 18811,30215 2p9cA 410 4.893 c.2.1.4,c.23.12.1,d.58.18.1 139556,139557,139558 2d5cA 263 5.182 2o4cA 380 6.037 2i99A 312 6.069 1ybaA 410 6.421 c.2.1.4,c.23.12.1,d.58.18.1 122872,122873,122874 1psdA 409 6.425 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1wdkA 715 6.433 a.100.1.3,a.100.1.3,c.2.1.6,c.14.1.3 109250,109251,109252,109253 1zcjA 463 6.945 2omeA 336 7.593 2hmvA 144 8.315 c.2.1.9 136615 1lsuA 147 8.957 c.2.1.9 74250 1il0A 302 9.098 a.100.1.3,c.2.1.6 66189,66190 1lsoA 302 9.113 a.100.1.3,c.2.1.6 91120,91121 2cvoA 366 9.608 c.2.1.3,d.81.1.1 130877,130878 1f0yA 302 9.860 a.100.1.3,c.2.1.6 18793,30197 1f17A 310 10.07 a.100.1.3,c.2.1.6 18797,30201 1m75A 302 10.33 a.100.1.3,c.2.1.6 91212,91213 1lsjA 302 10.35 a.100.1.3,c.2.1.6 91116,91117 1sc6A 404 11.27 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 3hadA 308 11.68 a.100.1.3,c.2.1.6 18799,30203 1hyhA 309 12.08 c.2.1.5,d.162.1.1 30150,42117 1a5zA 319 12.61 c.2.1.5,d.162.1.1 30181,42148 2eklA 313 13.66 1m76A 302 14.29 a.100.1.3,c.2.1.6 91216,91217 2vhxA 377 14.82 2vojA 371 14.90 2hdhA 293 15.34 a.100.1.3,c.2.1.6 18795,30199 1dxyA 333 15.44 c.2.1.4,c.23.12.1 30094,31354 2vhvA 377 15.44 1ygyA 529 15.94 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2q49A 359 16.42 c.2.1.3,d.81.1.1 139831,139832 2cduA 452 19.67 1xdwA 331 19.74 3hdhA 302 20.56 a.100.1.3,c.2.1.6 18805,30209 1v9lA 421 20.77 c.2.1.7,c.58.1.1 113583,113584 1pjcA 361 21.54 c.2.1.4,c.23.12.2 30101,31361 2p4hX 322 22.01 1qp8A 303 23.00 c.2.1.4,c.23.12.1 30092,31352 2plaA 349 26.21 1zh8A 340 26.21 c.2.1.3,d.81.1.5 125077,125078 1j5pA 253 26.86 d.81.1.3,c.2.1.3 71577,83092 2dc1A 236 27.13 1jw9B 249 27.24 c.111.1.1 67377 2g82A 331 27.68 c.2.1.3,d.81.1.1 134746,134747 2bw0A 329 28.11 b.46.1.1,c.65.1.1 129303,129304 1zud1 251 29.89 1zfnA 253 30.56 2qytA 317 33.84 2axqA 467 35.10 2o3jA 481 38.86 3bioA 304 38.86 2csuA 457 39.43 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2czcA 334 39.68 d.81.1.1 131044 2o7sA 523 40.41 2r2gA 318 43.11 2ep5A 350 44.09 2r6jA 318 44.20 1h2hA 241 44.35 d.81.1.3,c.2.1.3 70861,83058 1ainA 314 44.63 a.65.1.1 18145 2ph5A 480 44.84 2q3eA 467 46.11 2vdcG 456 46.21 1tltA 319 47.15 c.2.1.3,d.81.1.5 107135,107136 1yj8A 375 47.99 2cukA 311 49.20 1ybqB 390 55.40 1k3tA 359 55.57 c.2.1.3,d.81.1.1 72022,72023 1ybqA 390 56.37 2gsdA 402 56.83 1onxA 390 61.01 b.92.1.7,c.1.9.13 87176,87177 2aqoA 390 61.01 1omoA 322 61.52 c.2.1.13 104017 1onwA 390 61.52 b.92.1.7,c.1.9.13 87172,87173 1vllA 334 61.66 c.2.1.13 108834 2aqvA 390 61.84 1vknA 351 61.96 c.2.1.3,d.81.1.1 108676,108677 1z82A 335 62.03 2eggA 297 63.49 2v6bA 304 64.01 2cf5A 357 64.93 1nytA 271 65.60 c.2.1.7,c.58.1.5 86417,86418 1y81A 138 65.66 c.2.1.8 122731 1lssA 140 67.30 c.2.1.9 74246 2c7vA 268 67.66 1f06A 320 70.39 c.2.1.3,d.81.1.3 59556,59557 1l9zH 438 70.60 i.8.1.1 73771 1gdhA 320 71.32 c.2.1.4,c.23.12.1 30095,31355 1qmgA 524 71.90 a.100.1.2,c.2.1.6 18785,30182 2g1uA 155 72.55 1b0aA 288 74.91 c.2.1.7,c.58.1.2 30286,33934 1vc2A 331 75.46 c.2.1.3,d.81.1.1 100555,100556 3cosA 381 82.35 1ggaA 358 82.90 c.2.1.3,d.81.1.1 30002,39917 1pquA 371 83.06 c.2.1.3,d.81.1.1 104288,104289 1ps8A 371 84.28 c.2.1.3,d.81.1.1 104304,104305 1y1pA 342 85.00 c.2.1.2 122550 1nwcA 371 88.85 c.2.1.3,d.81.1.1 92229,92230