# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h78A 302 7.85e-11 1yb4A 295 8.92e-11 1vpdA 299 3.51e-10 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 4.97e-10 2rcyA 262 6.51e-10 2ahrA 259 6.53e-10 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 7.52e-10 1yqgA 263 3.12e-09 2pgdA 482 3.32e-09 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 3.61e-09 a.100.1.12,c.2.1.6 132772,132773 2cvzA 289 3.85e-09 a.100.1.1,c.2.1.6 130890,130891 2graA 277 4.45e-09 2p4qA 497 5.91e-09 2g5cA 281 8.81e-09 a.100.1.12,c.2.1.6 134646,134647 2pv7A 298 1.16e-08 1np3A 338 4.58e-08 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 5.04e-08 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 6.98e-08 3c24A 286 1.62e-07 1i36A 264 4.16e-07 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 6.05e-07 1ks9A 291 8.52e-07 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 1.23e-06 a.100.1.6,c.2.1.6 112775,112776 1yrlA 491 1.44e-06 1qmgA 524 1.70e-06 a.100.1.2,c.2.1.6 18785,30182 2ew2A 316 3.59e-06 1zejA 293 4.20e-06 1evyA 366 5.05e-06 a.100.1.6,c.2.1.6 18811,30215 2o3jA 481 9.04e-06 1dljA 402 1.21e-05 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1mv8A 436 1.26e-05 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1f0yA 302 1.30e-05 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 2.45e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 2.97e-05 1zcjA 463 0.000167 1jayA 212 0.000337 c.2.1.6 66478 2dpoA 319 0.002236 1bg6A 359 0.002439 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.003440 1ff9A 450 0.006962 c.2.1.3,d.81.1.2 30039,39954 2nacA 393 0.01020 c.2.1.4,c.23.12.1 30088,31348 2qytA 317 0.01068 1gdhA 320 0.01897 c.2.1.4,c.23.12.1 30095,31355 2b0jA 358 0.03552 a.100.1.11,c.2.1.6 127639,127640 1tltA 319 0.04121 c.2.1.3,d.81.1.5 107135,107136 2fssA 365 0.04614 1mx3A 347 0.05859 c.2.1.4,c.23.12.1 79638,79639 2j6iA 364 0.06065 1ldg 316 0.06346 1wwkA 307 0.06738 1u8xX 472 0.07158 c.2.1.5,d.162.1.2 107741,107742 1xwfA 431 0.07498 c.2.1.4,c.23.12.3 122392,122393 1t2dA 322 0.07537 c.2.1.5,d.162.1.1 99084,99085 1j4aA 333 0.09199 c.2.1.4,c.23.12.1 71502,71503 1vllA 334 0.09337 c.2.1.13 108834 2hk9A 275 0.09368 1d4fA 431 0.09890 c.2.1.4,c.23.12.3 30110,31370 2g76A 335 0.1105 1omoA 322 0.1121 c.2.1.13 104017 1gpjA 404 0.1218 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1psdA 409 0.1223 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1xdwA 331 0.1304 1pzgA 331 0.1335 c.2.1.5,d.162.1.1 95425,95426 1li4A 432 0.1364 c.2.1.4,c.23.12.3 84616,84617 1lldA 319 0.1373 c.2.1.5,d.162.1.1 30177,42144 1uxjA 309 0.1706 c.2.1.5,d.162.1.1 108112,108113 1x7dA 350 0.1842 c.2.1.13 114927 1xeaA 323 0.2067 c.2.1.3,d.81.1.5 109572,109573 1lssA 140 0.2306 c.2.1.9 74246 1up6A 416 0.2483 c.2.1.5,d.162.1.2 107976,107977 1dxy 333 0.2525 1ur5A 309 0.2574 c.2.1.5,d.162.1.1 99807,99808 2dbqA 334 0.2784 2d0iA 333 0.3168 2o4cA 380 0.3240 2pi1A 334 0.3608 1qp8A 303 0.3660 c.2.1.4,c.23.12.1 30092,31352 1v8bA 479 0.3994 c.2.1.4,c.23.12.3 113564,113565 1up7A 417 0.4015 c.2.1.5,d.162.1.2 113374,113375 1ygyA 529 0.4263 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2d5cA 263 0.4484 1sc6A 404 0.5432 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1nytA 271 0.5931 c.2.1.7,c.58.1.5 86417,86418 1hyhA 309 0.5956 c.2.1.5,d.162.1.1 30150,42117 2nvwA 479 0.6136 c.2.1.3,d.81.1.5 138665,138666 2ewdA 317 0.6502 2gcgA 330 0.6986 1guzA 310 0.8018 c.2.1.5,d.162.1.1 65586,65587 2nloA 302 0.8232 1f06A 320 0.9319 c.2.1.3,d.81.1.3 59556,59557 2cukA 311 1.003 6ldhA 329 1.017 c.2.1.5,d.162.1.1 30161,42128 1s6yA 450 1.021 c.2.1.5,d.162.1.2 105314,105315 1dxyA 333 1.047 c.2.1.4,c.23.12.1 30094,31354 2axqA 467 1.061 2eggA 297 1.069 1obbA 480 1.090 c.2.1.5,d.162.1.2 86760,86761 1npyA 271 1.117 c.2.1.7,c.58.1.5 85995,85996 1pjcA 361 1.232 c.2.1.4,c.23.12.2 30101,31361 1c1dA 355 1.270 c.2.1.7,c.58.1.1 30270,33918 1vjtA 483 1.278 c.2.1.5,d.162.1.2 100833,100834 2hmvA 144 1.296 c.2.1.9 136615 1qv9A 283 1.555 c.127.1.1 96356 1nvtA 287 1.628 c.2.1.7,c.58.1.5 86270,86271 1a5zA 319 1.667 c.2.1.5,d.162.1.1 30181,42148 1lehA 364 1.692 c.2.1.7,c.58.1.1 30268,33916 1p77A 272 1.703 c.2.1.7,c.58.1.5 94214,94215 2gptA 523 1.847 2vhxA 377 1.917 2d59A 144 1.927 c.2.1.8 131266 2v7pA 310 1.996 2i6tA 303 2.083 2ho3A 325 2.337 1gcuA 295 2.504 c.2.1.3,d.81.1.4 30063,39978 2glxA 332 2.881 1ez4A 318 3.031 c.2.1.5,d.162.1.1 64917,64918 1iukA 140 3.035 c.2.1.8 83712 2dc1A 236 3.074 2g1uA 155 3.310 2vojA 371 3.680 2o7sA 523 3.690 3c85A 183 3.823 1a4iA 301 3.923 c.2.1.7,c.58.1.2 30278,33926 1hdoA 206 4.078 c.2.1.2 60965 1lsuA 147 4.391 c.2.1.9 74250 1nvmB 312 5.066 c.2.1.3,d.81.1.1 86251,86252 2q4eA 362 5.302 1y81A 138 5.513 c.2.1.8 122731 1scuA 288 5.646 c.2.1.8,c.23.4.1 30307,31135 2p2sA 336 5.769 1vknA 351 5.816 c.2.1.3,d.81.1.1 108676,108677 1luaA 287 5.899 c.2.1.7,c.58.1.4 78216,78217 2nqtA 352 5.915 1ofgA 381 6.017 c.2.1.3,d.81.1.5 30064,39979 1vi2A 300 6.834 c.2.1.7,c.58.1.5 100726,100727 2czcA 334 7.123 d.81.1.1 131044 2csuA 457 7.299 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2cmdA 312 7.565 c.2.1.5,d.162.1.1 30135,42102 1l7dA 384 7.571 c.2.1.4,c.23.12.2 77774,77775 2g17A 337 7.576 c.2.1.3,d.81.1.1 134512,134513 1h6dA 433 7.667 c.2.1.3,d.81.1.5 65656,65657 2hjsA 340 8.717 c.2.1.3,d.81.1.1 136547,136548 1b0aA 288 9.498 c.2.1.7,c.58.1.2 30286,33934 3ceaA 346 9.599 1j5pA 253 9.96 d.81.1.3,c.2.1.3 71577,83092 2gz1A 366 10.76 c.2.1.3,d.81.1.1 135887,135888 1drw 273 10.99 1drwA 273 11.26 c.2.1.3,d.81.1.3 30057,39972 3c1aA 315 11.49 2v3aA 384 12.29 1qydA 313 12.37 c.2.1.2 96583 1lc0A 294 12.59 c.2.1.3,d.81.1.4 73823,73824 2exxA 306 12.64 2ph5A 480 14.15 1jw9B 249 14.85 c.111.1.1 67377 1k6xA 352 14.97 c.2.1.2 68238 1rydA 387 14.99 c.2.1.3,d.81.1.5 118801,118802 3bioA 304 15.20 1xcbA 211 15.67 a.4.5.38,c.2.1.12 109552,109553 2z1nA 260 16.18 2o4uX 334 16.39 2aefA 234 16.50 1zud1 251 18.43 1orrA 347 18.89 c.2.1.2 93460 1x13A 401 19.15 1cf2O 337 19.97 c.2.1.3,d.81.1.1 29994,39909 1xq6A 253 21.72 c.2.1.2 115829 2ozpA 345 24.08 2dt5A 211 24.29 a.4.5.38,c.2.1.12 131708,131709 2r00A 336 25.10 1k2wA 256 25.69 c.2.1.2 90927 2q49A 359 26.39 c.2.1.3,d.81.1.1 139831,139832 2pd6A 264 26.68 1uufA 369 26.70 b.35.1.2,c.2.1.1 100006,100007 1qycA 308 27.97 c.2.1.2 96581 1x7gA 261 28.26 c.2.1.2 114929 2yx0A 342 28.41 1gegA 256 28.48 c.2.1.2 29888 2a9fA 398 28.58 2gqwA 408 28.70 1pl8A 356 28.72 b.35.1.2,c.2.1.1 94878,94879 2a4kA 263 29.00 c.2.1.2 126156 1xhlA 297 29.47 c.2.1.2 109591 1ydeA 270 29.83 c.2.1.2 122980 1zh8A 340 30.79 c.2.1.3,d.81.1.5 125077,125078 2eklA 313 31.01 1bgvA 449 32.49 c.2.1.7,c.58.1.1 30217,33865 2ixaA 444 33.22 2cduA 452 34.21 2gasA 307 35.06 1b16A 254 35.64 c.2.1.2 29875 1xseA 295 35.67 c.2.1.2 115925 1hwxA 501 36.67 c.2.1.7,c.58.1.1 30250,33898 1o6zA 303 36.72 c.2.1.5,d.162.1.1 81107,81108 1gtmA 419 36.85 c.2.1.7,c.58.1.1 30223,33871 1zk4A 251 37.18 c.2.1.2 125176 1yqzA 438 37.76 1xkqA 280 37.95 c.2.1.2 115417 1fmcA 255 38.04 c.2.1.2 29856 2cdcA 366 38.75 1e3jA 352 39.00 b.35.1.2,c.2.1.1 24765,29781 1xgkA 352 41.29 c.2.1.2 115286 2bryA 497 42.23 1yxmA 303 43.68 c.2.1.2 124192 1l9cA 389 43.97 c.3.1.2,d.16.1.3 77815,77816 1nffA 260 44.10 c.2.1.2 80457 2r0cA 549 44.59 1rkxA 357 44.82 c.2.1.2 97631 1zmdA 474 44.92 1ja9A 274 45.06 c.2.1.2 62817 2jahA 247 45.16 2q46A 253 45.61 c.2.1.2 139825 1w6uA 302 45.99 c.2.1.2 114288 2gdzA 267 47.19 c.2.1.2 135043 1n7hA 381 48.10 c.2.1.2 80250 2bzgA 232 48.37 c.66.1.36 129559 1pbeA 394 48.74 c.3.1.2,d.16.1.2 30338,37869 1spxA 278 49.40 c.2.1.2 98958 1othA 321 49.70 c.78.1.1,c.78.1.1 35260,35261 1hdcA 253 50.68 c.2.1.2 29862 1q7bA 244 51.02 c.2.1.2 96026 2bgkA 278 51.06 c.2.1.2 128480 1id1A 153 51.68 c.2.1.9 62286 2ag5A 246 51.75 c.2.1.2 126719 1hxhA 253 52.57 c.2.1.2 76725 2nwqA 272 53.51 1t2aA 375 54.44 c.2.1.2 99078 1y1pA 342 54.51 c.2.1.2 122550 2pnfA 248 54.66 2o23A 265 54.80 c.2.1.2 138884 2cf5A 357 55.09 1nhpA 447 55.33 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2cfcA 250 56.28 2qa1A 500 56.48 2r6jA 318 56.62 1cydA 244 56.84 c.2.1.2 29825 1nhsA 447 56.86 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 5nul 138 57.12 1yb1A 272 57.50 c.2.1.2 116599 1dv2A 452 57.71 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2h6eA 344 57.78 1fl2A 310 58.39 c.3.1.5,c.3.1.5 59869,59870 1vl8A 267 58.48 c.2.1.2 108733 1yovA 537 59.40 c.111.1.2 123785 1e7wA 291 59.52 c.2.1.2 59373 1y56B 382 59.94 2gf3A 389 60.01 c.3.1.2,d.16.1.3 135070,135071 1xu9A 286 60.22 c.2.1.2 116052 2b5wA 357 60.33 1sbyA 254 60.84 c.2.1.2 118930 1in4A 334 61.35 a.4.5.11,c.37.1.20 62597,62598 1pvvA 315 61.75 c.78.1.1,c.78.1.1 95190,95191 1zmtA 254 61.83 c.2.1.2 125363 2c5aA 379 62.44 c.2.1.2 129894 2p4hX 322 63.56 2yutA 207 63.70 1bdbA 277 64.46 c.2.1.2 29874 2obnA 349 65.37 1sb8A 352 66.41 c.2.1.2 105410 1vl6A 388 66.64 c.2.1.7,c.58.1.3 108724,108725 1db3A 372 67.45 c.2.1.2 29813 1q1rA 431 68.13 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1pjqA 457 68.70 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1i2cA 404 69.07 c.2.1.2 83666 1hyuA 521 69.21 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1b7gO 340 69.86 c.2.1.3,d.81.1.1 29992,39907 1pwxA 254 70.24 c.2.1.2 95262 1f4pA 147 71.21 c.23.5.1 59651 2nxcA 254 71.33 c.66.1.39 138739 2iidA 498 72.06 c.3.1.2,d.16.1.5 137426,137427 1mb4A 370 73.13 c.2.1.3,d.81.1.1 78908,78909 2c29D 337 73.68 1bxkA 355 74.90 c.2.1.2 29803 1duvG 333 75.70 c.78.1.1,c.78.1.1 35228,35229 2pn1A 331 75.74 2ph3A 245 76.14 2b69A 343 76.36 c.2.1.2 127974 2h1rA 299 77.75 1vj0A 380 80.94 b.35.1.2,c.2.1.1 100786,100787 5nulA 138 81.39 c.23.5.1 31191 1zq9A 285 81.80 c.66.1.24 125505 1hrdA 449 82.69 c.2.1.7,c.58.1.1 30219,33867 2a5lA 200 83.38 c.23.5.8 126176 2blnA 305 84.24 b.46.1.1,c.65.1.1 128734,128735 3grs 478 85.13 1k20A 310 86.08 c.107.1.1 68027 2c2xA 281 86.63 1eyzA 392 86.67 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2dvmA 439 86.88 2c07A 285 86.89 c.2.1.2 129577 1in6A 334 87.24 a.4.5.11,c.37.1.20 62601,62602 2olnA 397 87.29 1zk7A 467 89.97