# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 2.36e-10 2h78A 302 2.94e-10 1vpdA 299 1.31e-09 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 1.35e-09 2ahrA 259 2.71e-09 a.100.1.10,c.2.1.6 126775,126776 2rcyA 262 2.77e-09 2izzA 322 3.45e-09 2f1kA 279 6.99e-09 a.100.1.12,c.2.1.6 132772,132773 1yqgA 263 9.61e-09 2graA 277 1.10e-08 2pgdA 482 1.12e-08 a.100.1.1,c.2.1.6 18778,30190 2cvzA 289 1.30e-08 a.100.1.1,c.2.1.6 130890,130891 2p4qA 497 1.44e-08 2g5cA 281 2.39e-08 a.100.1.12,c.2.1.6 134646,134647 2pv7A 298 2.84e-08 1np3A 338 1.11e-07 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 1.36e-07 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 1.82e-07 3c24A 286 4.49e-07 1i36A 264 9.83e-07 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 1.03e-06 1ks9A 291 1.98e-06 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 2.72e-06 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 3.64e-06 a.100.1.2,c.2.1.6 18785,30182 1yrlA 491 3.81e-06 1evyA 366 7.31e-06 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 8.26e-06 1zejA 293 1.01e-05 2o3jA 481 1.92e-05 1dljA 402 1.97e-05 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 2.47e-05 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 4.06e-05 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dliA 402 4.21e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 6.67e-05 1zcjA 463 0.000215 1jayA 212 0.000500 c.2.1.6 66478 1bg6A 359 0.003994 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.004005 1ff9A 450 0.007245 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.007913 2qytA 317 0.01805 2nacA 393 0.02532 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 0.04175 c.2.1.4,c.23.12.1 30095,31355 1tltA 319 0.07227 c.2.1.3,d.81.1.5 107135,107136 2b0jA 358 0.07947 a.100.1.11,c.2.1.6 127639,127640 2fssA 365 0.08061 1ldg 316 0.08772 1u8xX 472 0.09416 c.2.1.5,d.162.1.2 107741,107742 1t2dA 322 0.1120 c.2.1.5,d.162.1.1 99084,99085 2j6iA 364 0.1225 1wwkA 307 0.1244 2hk9A 275 0.1293 1mx3A 347 0.1294 c.2.1.4,c.23.12.1 79638,79639 1vllA 334 0.1369 c.2.1.13 108834 1j4aA 333 0.1500 c.2.1.4,c.23.12.1 71502,71503 1uxjA 309 0.1503 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 0.1592 c.2.1.5,d.162.1.1 99807,99808 2g76A 335 0.1689 1d4fA 431 0.1727 c.2.1.4,c.23.12.3 30110,31370 1psdA 409 0.1730 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1omoA 322 0.1752 c.2.1.13 104017 1xwfA 431 0.1791 c.2.1.4,c.23.12.3 122392,122393 1xdwA 331 0.2034 1lldA 319 0.2062 c.2.1.5,d.162.1.1 30177,42144 1gpjA 404 0.2454 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1li4A 432 0.2576 c.2.1.4,c.23.12.3 84616,84617 1x7dA 350 0.2634 c.2.1.13 114927 1pzgA 331 0.3086 c.2.1.5,d.162.1.1 95425,95426 1lssA 140 0.3414 c.2.1.9 74246 1dxy 333 0.3551 1up6A 416 0.3645 c.2.1.5,d.162.1.2 107976,107977 2dbqA 334 0.3865 1xeaA 323 0.4368 c.2.1.3,d.81.1.5 109572,109573 2o4cA 380 0.4636 2d0iA 333 0.5110 1v8bA 479 0.5432 c.2.1.4,c.23.12.3 113564,113565 2nvwA 479 0.5924 c.2.1.3,d.81.1.5 138665,138666 1sc6A 404 0.6303 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1guzA 310 0.7346 c.2.1.5,d.162.1.1 65586,65587 1up7A 417 0.7454 c.2.1.5,d.162.1.2 113374,113375 1f06A 320 0.8464 c.2.1.3,d.81.1.3 59556,59557 1ygyA 529 0.8562 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1nytA 271 0.8772 c.2.1.7,c.58.1.5 86417,86418 6ldhA 329 0.8934 c.2.1.5,d.162.1.1 30161,42128 1hyhA 309 0.9095 c.2.1.5,d.162.1.1 30150,42117 1obbA 480 0.9187 c.2.1.5,d.162.1.2 86760,86761 2d5cA 263 0.9374 2pi1A 334 0.9614 2i6tA 303 1.080 2gcgA 330 1.155 2ewdA 317 1.210 1dxyA 333 1.349 c.2.1.4,c.23.12.1 30094,31354 2eggA 297 1.404 1qp8A 303 1.406 c.2.1.4,c.23.12.1 30092,31352 2axqA 467 1.569 1vjtA 483 1.582 c.2.1.5,d.162.1.2 100833,100834 1lehA 364 1.691 c.2.1.7,c.58.1.1 30268,33916 2eklA 313 1.715 1qv9A 283 1.737 c.127.1.1 96356 1a5zA 319 1.745 c.2.1.5,d.162.1.1 30181,42148 1s6yA 450 1.828 c.2.1.5,d.162.1.2 105314,105315 1pjcA 361 1.933 c.2.1.4,c.23.12.2 30101,31361 1nvtA 287 1.981 c.2.1.7,c.58.1.5 86270,86271 2vhxA 377 2.046 2cukA 311 2.097 2nloA 302 2.242 1npyA 271 2.378 c.2.1.7,c.58.1.5 85995,85996 1p77A 272 2.548 c.2.1.7,c.58.1.5 94214,94215 2d59A 144 2.549 c.2.1.8 131266 2hmvA 144 2.584 c.2.1.9 136615 2v7pA 310 2.822 1iukA 140 2.935 c.2.1.8 83712 2vojA 371 3.060 1c1dA 355 3.322 c.2.1.7,c.58.1.1 30270,33918 1ez4A 318 3.440 c.2.1.5,d.162.1.1 64917,64918 1lsuA 147 3.851 c.2.1.9 74250 2glxA 332 4.282 1gcuA 295 4.339 c.2.1.3,d.81.1.4 30063,39978 1y81A 138 4.821 c.2.1.8 122731 3c85A 183 5.254 2g1uA 155 5.436 2ho3A 325 5.449 1a4iA 301 5.585 c.2.1.7,c.58.1.2 30278,33926 1vknA 351 6.323 c.2.1.3,d.81.1.1 108676,108677 1nvmB 312 6.567 c.2.1.3,d.81.1.1 86251,86252 2gptA 523 6.634 1l7dA 384 7.560 c.2.1.4,c.23.12.2 77774,77775 1luaA 287 7.726 c.2.1.7,c.58.1.4 78216,78217 1hdoA 206 7.886 c.2.1.2 60965 2o7sA 523 8.351 2cmdA 312 8.441 c.2.1.5,d.162.1.1 30135,42102 1ofgA 381 8.559 c.2.1.3,d.81.1.5 30064,39979 2g17A 337 8.754 c.2.1.3,d.81.1.1 134512,134513 1drw 273 8.856 2dc1A 236 9.020 2aefA 234 9.165 2csuA 457 9.643 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1scuA 288 9.764 c.2.1.8,c.23.4.1 30307,31135 1h6dA 433 10.10 c.2.1.3,d.81.1.5 65656,65657 3bioA 304 10.19 2czcA 334 10.54 d.81.1.1 131044 2nqtA 352 10.96 2q4eA 362 11.24 1drwA 273 11.26 c.2.1.3,d.81.1.3 30057,39972 3ceaA 346 11.55 2p2sA 336 12.44 1vi2A 300 12.57 c.2.1.7,c.58.1.5 100726,100727 2ph5A 480 12.69 1j5pA 253 13.44 d.81.1.3,c.2.1.3 71577,83092 2hjsA 340 13.99 c.2.1.3,d.81.1.1 136547,136548 1b0aA 288 14.24 c.2.1.7,c.58.1.2 30286,33934 2gz1A 366 16.43 c.2.1.3,d.81.1.1 135887,135888 1lc0A 294 18.22 c.2.1.3,d.81.1.4 73823,73824 2ozpA 345 18.55 2q49A 359 18.74 c.2.1.3,d.81.1.1 139831,139832 1qydA 313 18.94 c.2.1.2 96583 1xcbA 211 19.05 a.4.5.38,c.2.1.12 109552,109553 3c1aA 315 19.14 2r00A 336 22.05 2z1nA 260 22.18 2exxA 306 23.55 2v3aA 384 24.26 1k2wA 256 25.35 c.2.1.2 90927 1xq6A 253 26.20 c.2.1.2 115829 1x7gA 261 27.91 c.2.1.2 114929 1zud1 251 27.99 2b5wA 357 28.52 1uufA 369 29.53 b.35.1.2,c.2.1.1 100006,100007 1jw9B 249 30.09 c.111.1.1 67377 1x13A 401 30.44 1k6xA 352 30.48 c.2.1.2 68238 1rydA 387 31.42 c.2.1.3,d.81.1.5 118801,118802 1cf2O 337 32.16 c.2.1.3,d.81.1.1 29994,39909 1pl8A 356 33.48 b.35.1.2,c.2.1.1 94878,94879 2dt5A 211 33.71 a.4.5.38,c.2.1.12 131708,131709 1ydeA 270 34.38 c.2.1.2 122980 1o6zA 303 34.45 c.2.1.5,d.162.1.1 81107,81108 1yxmA 303 35.87 c.2.1.2 124192 1xkqA 280 37.52 c.2.1.2 115417 1pwxA 254 38.00 c.2.1.2 95262 1xhlA 297 40.18 c.2.1.2 109591 1pjqA 457 40.48 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1hwxA 501 40.67 c.2.1.7,c.58.1.1 30250,33898 1spxA 278 41.50 c.2.1.2 98958 1zmtA 254 41.83 c.2.1.2 125363 1n7hA 381 41.83 c.2.1.2 80250 2o4uX 334 42.42 1gegA 256 42.45 c.2.1.2 29888 1xseA 295 42.46 c.2.1.2 115925 1b16A 254 42.73 c.2.1.2 29875 1e7wA 291 43.12 c.2.1.2 59373 2gdzA 267 43.34 c.2.1.2 135043 2bryA 497 44.03 2cf5A 357 44.13 2pd6A 264 45.19 1e3jA 352 45.30 b.35.1.2,c.2.1.1 24765,29781 1qycA 308 46.35 c.2.1.2 96581 1l9cA 389 46.41 c.3.1.2,d.16.1.3 77815,77816 1zh8A 340 47.20 c.2.1.3,d.81.1.5 125077,125078 1w6uA 302 47.56 c.2.1.2 114288 5nul 138 48.53 1zk4A 251 48.55 c.2.1.2 125176 1orrA 347 48.90 c.2.1.2 93460 1xu9A 286 49.52 c.2.1.2 116052 1cydA 244 49.81 c.2.1.2 29825 1fmcA 255 49.81 c.2.1.2 29856 2jahA 247 50.69 2bgkA 278 52.28 c.2.1.2 128480 2yx0A 342 52.48 1gtmA 419 52.62 c.2.1.7,c.58.1.1 30223,33871 1y1pA 342 54.38 c.2.1.2 122550 2gasA 307 54.43 2a4kA 263 54.68 c.2.1.2 126156 1n8kA 374 54.95 b.35.1.2,c.2.1.1 80298,80299 1vl8A 267 54.96 c.2.1.2 108733 1yb1A 272 55.61 c.2.1.2 116599 1hdcA 253 57.33 c.2.1.2 29862 1ja9A 274 57.48 c.2.1.2 62817 2cdcA 366 57.52 2obnA 349 57.96 2o23A 265 58.12 c.2.1.2 138884 2nwqA 272 58.21 1q7bA 244 58.35 c.2.1.2 96026 1nffA 260 59.50 c.2.1.2 80457 2gqwA 408 59.93 2q46A 253 60.11 c.2.1.2 139825 1othA 321 60.48 c.78.1.1,c.78.1.1 35260,35261 1zmdA 474 61.09 1hxhA 253 61.70 c.2.1.2 76725 1l1eA 287 62.59 c.66.1.18 73454 1mb4A 370 62.66 c.2.1.3,d.81.1.1 78908,78909 2ag5A 246 63.07 c.2.1.2 126719 2cduA 452 63.24 2r0cA 549 63.54 2c29D 337 63.75 2ixaA 444 63.80 1rkxA 357 63.83 c.2.1.2 97631 1ys4A 354 63.89 1b7gO 340 64.10 c.2.1.3,d.81.1.1 29992,39907 1sbyA 254 64.17 c.2.1.2 118930 1pbeA 394 64.76 c.3.1.2,d.16.1.2 30338,37869 2r6jA 318 65.14 1y56B 382 65.34 1q7gA 359 65.47 c.2.1.3,d.81.1.2 96038,96039 2ekpA 239 65.79 5nulA 138 66.04 c.23.5.1 31191 1bgvA 449 66.26 c.2.1.7,c.58.1.1 30217,33865 2h1rA 299 67.08 1kewA 361 67.20 c.2.1.2 68544 2qa1A 500 68.51 2fdxA 138 69.08 c.23.5.1 31192 1yqzA 438 70.70 1xgkA 352 71.97 c.2.1.2 115286 1h5qA 265 72.38 c.2.1.2 60643 2gf3A 389 72.71 c.3.1.2,d.16.1.3 135070,135071 1bdbA 277 73.14 c.2.1.2 29874 1k7cA 233 76.01 c.23.10.4 68267 1sb8A 352 76.85 c.2.1.2 105410 1dv2A 452 77.21 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1vl6A 388 77.48 c.2.1.7,c.58.1.3 108724,108725 1fl2A 310 77.56 c.3.1.5,c.3.1.5 59869,59870 1zq9A 285 77.60 c.66.1.24 125505 2pnfA 248 78.66 1i24A 404 80.43 c.2.1.2 83663 2yutA 207 81.65 2pn1A 331 81.99 2hsjA 214 83.46 1bxkA 355 83.52 c.2.1.2 29803 2ph3A 245 86.15 1e6wA 260 88.35 c.2.1.2 59326 1yovA 537 88.78 c.111.1.2 123785 1y5mA 276 88.83 c.2.1.2 122645 1x1eA 239 89.15 2cmgA 262 89.49