# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h78A 302 1.25e-13 1yb4A 295 1.62e-13 1vpdA 299 5.94e-13 a.100.1.1,c.2.1.6 113951,113952 2rcyA 262 1.45e-12 2i76A 276 1.53e-12 2ahrA 259 1.72e-12 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 4.26e-12 2pgdA 482 7.00e-12 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 1.70e-11 1yqgA 263 1.78e-11 2graA 277 2.16e-11 2cvzA 289 2.52e-11 a.100.1.1,c.2.1.6 130890,130891 2f1kA 279 2.63e-11 a.100.1.12,c.2.1.6 132772,132773 2pv7A 298 8.65e-11 2g5cA 281 1.01e-10 a.100.1.12,c.2.1.6 134646,134647 2pgd 482 3.33e-10 1np3A 338 4.46e-10 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 5.38e-10 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 6.02e-09 1bg6 359 1.36e-08 1i36A 264 2.19e-08 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 3.15e-08 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 5.26e-08 1qmgA 524 7.87e-08 a.100.1.2,c.2.1.6 18785,30182 1txgA 335 1.15e-07 a.100.1.6,c.2.1.6 112775,112776 1evyA 366 3.18e-07 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 3.90e-07 1zejA 293 4.22e-07 2o3jA 481 5.19e-07 1mv8A 436 6.99e-07 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dljA 402 1.30e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 1.31e-06 a.100.1.3,c.2.1.6 18793,30197 1z82A 335 3.15e-06 1dliA 402 3.84e-06 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1jayA 212 2.51e-05 c.2.1.6 66478 1zcjA 463 3.41e-05 1bg6A 359 8.59e-05 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.000622 1ff9A 450 0.001536 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.001748 1tltA 319 0.003685 c.2.1.3,d.81.1.5 107135,107136 2nacA 393 0.003723 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 0.004329 c.2.1.4,c.23.12.1 30095,31355 2qytA 317 0.006730 1mx3A 347 0.007550 c.2.1.4,c.23.12.1 79638,79639 2b0jA 358 0.01136 a.100.1.11,c.2.1.6 127639,127640 2fssA 365 0.01287 1wwkA 307 0.01389 1d4fA 431 0.02011 c.2.1.4,c.23.12.3 30110,31370 1xwfA 431 0.02099 c.2.1.4,c.23.12.3 122392,122393 2g76A 335 0.02357 2j6iA 364 0.02469 1u8xX 472 0.02655 c.2.1.5,d.162.1.2 107741,107742 1xeaA 323 0.02749 c.2.1.3,d.81.1.5 109572,109573 1j4aA 333 0.02796 c.2.1.4,c.23.12.1 71502,71503 1lssA 140 0.03316 c.2.1.9 74246 1li4A 432 0.03476 c.2.1.4,c.23.12.3 84616,84617 2hk9A 275 0.03620 1xdwA 331 0.03852 1v8bA 479 0.04301 c.2.1.4,c.23.12.3 113564,113565 1sc6A 404 0.04384 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1lldA 319 0.06190 c.2.1.5,d.162.1.1 30177,42144 2dbqA 334 0.06355 1psdA 409 0.06616 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1t2dA 322 0.07234 c.2.1.5,d.162.1.1 99084,99085 1ldg 316 0.07743 2d0iA 333 0.09503 1dxy 333 0.09850 1vllA 334 0.1109 c.2.1.13 108834 1uxjA 309 0.1171 c.2.1.5,d.162.1.1 108112,108113 1omoA 322 0.1402 c.2.1.13 104017 1ur5A 309 0.1442 c.2.1.5,d.162.1.1 99807,99808 2o4cA 380 0.1498 1gpjA 404 0.1570 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1x7dA 350 0.1596 c.2.1.13 114927 1pzgA 331 0.1602 c.2.1.5,d.162.1.1 95425,95426 2glxA 332 0.2129 1lsuA 147 0.2169 c.2.1.9 74250 2ho3A 325 0.2384 1up6A 416 0.2421 c.2.1.5,d.162.1.2 107976,107977 2axqA 467 0.2481 2pi1A 334 0.2612 1lehA 364 0.2826 c.2.1.7,c.58.1.1 30268,33916 2nvwA 479 0.2840 c.2.1.3,d.81.1.5 138665,138666 1gcuA 295 0.2970 c.2.1.3,d.81.1.4 30063,39978 1ygyA 529 0.3002 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2d59A 144 0.3170 c.2.1.8 131266 1y81A 138 0.3195 c.2.1.8 122731 1qp8A 303 0.3200 c.2.1.4,c.23.12.1 30092,31352 2hmvA 144 0.3205 c.2.1.9 136615 2gcgA 330 0.3573 1iukA 140 0.3962 c.2.1.8 83712 1nytA 271 0.4193 c.2.1.7,c.58.1.5 86417,86418 2d5cA 263 0.4556 1s6yA 450 0.4752 c.2.1.5,d.162.1.2 105314,105315 2vhxA 377 0.4923 2aefA 234 0.4971 2dc1A 236 0.4998 1c1dA 355 0.5039 c.2.1.7,c.58.1.1 30270,33918 1dxyA 333 0.5628 c.2.1.4,c.23.12.1 30094,31354 2g1uA 155 0.5907 3c1aA 315 0.6152 3ceaA 346 0.6650 1ofgA 381 0.6744 c.2.1.3,d.81.1.5 30064,39979 2eklA 313 0.6825 2ewdA 317 0.6870 2p2sA 336 0.7088 1up7A 417 0.7090 c.2.1.5,d.162.1.2 113374,113375 3c85A 183 0.7127 1guzA 310 0.7481 c.2.1.5,d.162.1.1 65586,65587 1obbA 480 0.7679 c.2.1.5,d.162.1.2 86760,86761 6ldhA 329 0.8377 c.2.1.5,d.162.1.1 30161,42128 1vjtA 483 0.8391 c.2.1.5,d.162.1.2 100833,100834 2q4eA 362 1.053 1hyhA 309 1.087 c.2.1.5,d.162.1.1 30150,42117 2nloA 302 1.114 1f06A 320 1.183 c.2.1.3,d.81.1.3 59556,59557 2cukA 311 1.187 1h6dA 433 1.218 c.2.1.3,d.81.1.5 65656,65657 2i6tA 303 1.292 1npyA 271 1.321 c.2.1.7,c.58.1.5 85995,85996 1zh8A 340 1.419 c.2.1.3,d.81.1.5 125077,125078 2eggA 297 1.454 1nvtA 287 1.485 c.2.1.7,c.58.1.5 86270,86271 2o4uX 334 1.498 2vojA 371 1.918 1pjcA 361 1.919 c.2.1.4,c.23.12.2 30101,31361 1rydA 387 2.136 c.2.1.3,d.81.1.5 118801,118802 1a5zA 319 2.255 c.2.1.5,d.162.1.1 30181,42148 2csuA 457 2.262 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1p77A 272 2.404 c.2.1.7,c.58.1.5 94214,94215 1qv9A 283 2.538 c.127.1.1 96356 1vknA 351 2.591 c.2.1.3,d.81.1.1 108676,108677 1scuA 288 2.893 c.2.1.8,c.23.4.1 30307,31135 1a4iA 301 3.209 c.2.1.7,c.58.1.2 30278,33926 2v7pA 310 3.328 1ez4A 318 3.978 c.2.1.5,d.162.1.1 64917,64918 2ph5A 480 3.998 1drwA 273 4.338 c.2.1.3,d.81.1.3 30057,39972 1lc0A 294 4.960 c.2.1.3,d.81.1.4 73823,73824 1b0aA 288 5.309 c.2.1.7,c.58.1.2 30286,33934 1drw 273 5.391 2gptA 523 5.635 1xcbA 211 6.122 a.4.5.38,c.2.1.12 109552,109553 1j5pA 253 6.300 d.81.1.3,c.2.1.3 71577,83092 2o7sA 523 6.559 1id1A 153 6.700 c.2.1.9 62286 1hdoA 206 7.726 c.2.1.2 60965 2ixaA 444 7.876 1luaA 287 9.504 c.2.1.7,c.58.1.4 78216,78217 1nvmB 312 10.02 c.2.1.3,d.81.1.1 86251,86252 1uufA 369 10.08 b.35.1.2,c.2.1.1 100006,100007 1l7dA 384 10.23 c.2.1.4,c.23.12.2 77774,77775 2cmdA 312 10.36 c.2.1.5,d.162.1.1 30135,42102 2czcA 334 10.50 d.81.1.1 131044 2v3aA 384 11.71 1qydA 313 12.79 c.2.1.2 96583 2nxcA 254 13.12 c.66.1.39 138739 1vi2A 300 13.14 c.2.1.7,c.58.1.5 100726,100727 2bryA 497 13.16 2q49A 359 13.52 c.2.1.3,d.81.1.1 139831,139832 1zud1 251 13.95 1vj0A 380 14.36 b.35.1.2,c.2.1.1 100786,100787 2exxA 306 14.59 1n7hA 381 15.90 c.2.1.2 80250 2r6jA 318 16.03 1orrA 347 16.19 c.2.1.2 93460 1k6xA 352 16.42 c.2.1.2 68238 2gasA 307 16.62 1e3jA 352 16.82 b.35.1.2,c.2.1.1 24765,29781 2z1nA 260 16.85 1l1eA 287 16.92 c.66.1.18 73454 2hjsA 340 17.35 c.2.1.3,d.81.1.1 136547,136548 1pl8A 356 17.51 b.35.1.2,c.2.1.1 94878,94879 2dt5A 211 17.85 a.4.5.38,c.2.1.12 131708,131709 2yx0A 342 18.40 1qycA 308 18.51 c.2.1.2 96581 1pvvA 315 18.76 c.78.1.1,c.78.1.1 95190,95191 1othA 321 18.81 c.78.1.1,c.78.1.1 35260,35261 1hdcA 253 18.94 c.2.1.2 29862 2g17A 337 19.05 c.2.1.3,d.81.1.1 134512,134513 1gtmA 419 20.01 c.2.1.7,c.58.1.1 30223,33871 1kjqA 391 20.48 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2cf5A 357 20.98 1jw9B 249 21.00 c.111.1.1 67377 2a4kA 263 21.34 c.2.1.2 126156 1hxhA 253 21.84 c.2.1.2 76725 1q7bA 244 22.58 c.2.1.2 96026 1k2wA 256 23.33 c.2.1.2 90927 1nffA 260 23.75 c.2.1.2 80457 2nqtA 352 23.78 1y9aA 360 24.94 2d8aA 348 26.02 2ouiA 360 26.48 1t2aA 375 27.42 c.2.1.2 99078 1db3A 372 27.54 c.2.1.2 29813 1eyzA 392 27.63 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2jhfA 374 27.72 b.35.1.2,c.2.1.1 138314,138315 2ag5A 246 27.80 c.2.1.2 126719 1n8kA 374 28.04 b.35.1.2,c.2.1.1 80298,80299 5nul 138 28.10 2o23A 265 30.42 c.2.1.2 138884 1p0fA 373 30.97 b.35.1.2,c.2.1.1 87642,87643 1f8fA 371 31.86 b.35.1.2,c.2.1.1 83246,83247 2blnA 305 32.01 b.46.1.1,c.65.1.1 128734,128735 1xhlA 297 32.06 c.2.1.2 109591 1f6yA 262 32.56 c.1.21.2 29673 2pd6A 264 33.82 2r00A 336 33.85 1kevA 351 34.09 b.35.1.2,c.2.1.1 24749,29765 2gqwA 408 34.30 1jvbA 347 34.70 b.35.1.2,c.2.1.1 77181,77182 1vl6A 388 34.71 c.2.1.7,c.58.1.3 108724,108725 1oi7A 288 34.81 c.2.1.8,c.23.4.1 87049,87050 1iz0A 302 34.91 b.35.1.2,c.2.1.1 83821,83822 1cf2O 337 35.38 c.2.1.3,d.81.1.1 29994,39909 1eudA 311 35.41 c.2.1.8,c.23.4.1 30312,31140 2r0cA 549 35.67 1xseA 295 35.97 c.2.1.2 115925 1ydeA 270 37.75 c.2.1.2 122980 1bdbA 277 38.15 c.2.1.2 29874 1rkxA 357 38.60 c.2.1.2 97631 1yb2A 275 38.73 c.66.1.13 122868 2cduA 452 38.94 1yqzA 438 39.05 1gegA 256 39.42 c.2.1.2 29888 1xq6A 253 40.51 c.2.1.2 115829 1fmcA 255 40.79 c.2.1.2 29856 2dwcA 433 41.10 2ozpA 345 41.91 1y1pA 342 42.22 c.2.1.2 122550 1in4A 334 42.32 a.4.5.11,c.37.1.20 62597,62598 6mhtA 327 42.45 c.66.1.26 34226 1m1nB 522 42.79 c.92.2.3 78418 2fdxA 138 43.38 c.23.5.1 31192 3bioA 304 43.74 1zmdA 474 43.83 1x13A 401 44.20 1sb8A 352 44.21 c.2.1.2 105410 1dv2A 452 44.28 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1yqdA 366 45.15 1o54A 277 45.61 c.66.1.13 92482 1ja9A 274 45.66 c.2.1.2 62817 1u3wA 374 46.35 b.35.1.2,c.2.1.1 113013,113014 1e6wA 260 46.93 c.2.1.2 59326 2yv1A 294 47.37 1kpgA 287 47.77 c.66.1.18 68735 1pwxA 254 48.01 c.2.1.2 95262 1cydA 244 48.68 c.2.1.2 29825 1x7gA 261 49.03 c.2.1.2 114929 2c29D 337 49.52 2gdzA 267 49.91 c.2.1.2 135043 1duvG 333 49.92 c.78.1.1,c.78.1.1 35228,35229 1z15A 344 50.22 1ve3A 227 50.32 c.66.1.43 120010 2gz1A 366 50.34 c.2.1.3,d.81.1.1 135887,135888 2qa1A 500 50.42 1jqbA 351 50.52 b.35.1.2,c.2.1.1 77151,77152 1yb1A 272 51.10 c.2.1.2 116599 1yxmA 303 51.89 c.2.1.2 124192 1xu9A 286 52.19 c.2.1.2 116052 1f4pA 147 53.73 c.23.5.1 59651 1q1rA 431 55.06 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 3c8mA 331 55.22 1zk4A 251 55.48 c.2.1.2 125176 1b16A 254 55.88 c.2.1.2 29875 1vl8A 267 56.36 c.2.1.2 108733 2bzgA 232 56.94 c.66.1.36 129559 2yxdA 183 57.84 1zd8A 227 58.02 2pnfA 248 58.07 2ekpA 239 58.37 1l9cA 389 58.58 c.3.1.2,d.16.1.3 77815,77816 1nhp 447 59.10 1nhpA 447 59.22 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2ef0A 301 59.90 1i2cA 404 60.33 c.2.1.2 83666 1xkqA 280 60.71 c.2.1.2 115417 1y56B 382 61.53 1w6uA 302 62.89 c.2.1.2 114288 3ladA 476 63.17 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 2qgvA 140 63.25 1bgvA 449 63.58 c.2.1.7,c.58.1.1 30217,33865 2pn1A 331 64.17 1gteA 1025 64.19 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2c7pA 327 64.65 c.66.1.26 130080 2a9fA 398 64.78 2eihA 343 65.89 2cdcA 366 65.90 1wyuB 474 66.68 c.67.1.7 121453 2b69A 343 67.06 c.2.1.2 127974 1pbeA 394 67.81 c.3.1.2,d.16.1.2 30338,37869 5nulA 138 67.96 c.23.5.1 31191 2ae2A 260 68.48 c.2.1.2 29945 2jahA 247 70.03 1nhsA 447 70.53 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 1zmtA 254 71.15 c.2.1.2 125363 2bgkA 278 71.19 c.2.1.2 128480 1e7wA 291 71.72 c.2.1.2 59373 1d7yA 408 73.37 c.3.1.5,c.3.1.5,d.87.1.1 30565,30566,40204 1xg5A 279 73.97 c.2.1.2 115277 2jdxA 385 74.17 d.126.1.2 41139 2gf3A 389 75.49 c.3.1.2,d.16.1.3 135070,135071 2fk8A 318 76.00 c.66.1.18 133648 1zk7A 467 76.63 1rpnA 335 76.90 c.2.1.2 97708 1spxA 278 77.45 c.2.1.2 98958 2h6eA 344 77.97 1bdb 277 79.41 2yutA 207 79.64 1h7wA 1025 79.65 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15683,28628,30324,30609,39007 1pjqA 457 79.82 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 2q46A 253 80.24 c.2.1.2 139825 1b7gO 340 80.37 c.2.1.3,d.81.1.1 29992,39907 1y5mA 276 80.69 c.2.1.2 122645 1udcA 338 80.88 c.2.1.2 29785 2ffiA 288 80.98 c.1.9.15 133385 2p91A 285 81.40 2ph3A 245 84.08 1xgkA 352 85.67 c.2.1.2 115286 2c5aA 379 86.79 c.2.1.2 129894 1zemA 262 87.53 c.2.1.2 124984 1sbyA 254 87.86 c.2.1.2 118930 2nwqA 272 87.95 3ckkA 235 88.43 1hwxA 501 88.87 c.2.1.7,c.58.1.1 30250,33898 2ax4A 198 89.31 1ebfA 358 89.56 c.2.1.3,d.81.1.2 30033,39948 2olnA 397 89.59 1ps9A 671 89.96 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078