# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 1.60e-12 2h78A 302 1.94e-12 1vpdA 299 1.34e-11 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 1.35e-11 2rcyA 262 1.41e-11 2ahrA 259 1.71e-11 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 4.00e-11 1yqgA 263 8.60e-11 2f1kA 279 9.09e-11 a.100.1.12,c.2.1.6 132772,132773 2pgdA 482 1.37e-10 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 2.19e-10 2cvzA 289 2.49e-10 a.100.1.1,c.2.1.6 130890,130891 2g5cA 281 3.27e-10 a.100.1.12,c.2.1.6 134646,134647 2graA 277 4.08e-10 2pv7A 298 6.65e-10 1np3A 338 1.65e-09 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 2.96e-09 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 4.70e-09 3c24A 286 1.51e-08 1i36A 264 5.01e-08 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 8.40e-08 1txgA 335 1.14e-07 a.100.1.6,c.2.1.6 112775,112776 1ks9A 291 1.20e-07 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 2.75e-07 2ew2A 316 3.78e-07 1evyA 366 4.93e-07 a.100.1.6,c.2.1.6 18811,30215 1qmgA 524 5.12e-07 a.100.1.2,c.2.1.6 18785,30182 1zejA 293 5.42e-07 2o3jA 481 2.30e-06 1dljA 402 3.46e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 3.74e-06 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 4.54e-06 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1z82A 335 7.56e-06 1dliA 402 1.29e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zcjA 463 6.02e-05 1jayA 212 7.26e-05 c.2.1.6 66478 1bg6A 359 0.000663 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.001907 1ff9A 450 0.002650 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.004598 2qytA 317 0.008645 1gdhA 320 0.01174 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.01584 c.2.1.4,c.23.12.1 30088,31348 1u8xX 472 0.02517 c.2.1.5,d.162.1.2 107741,107742 1tltA 319 0.02955 c.2.1.3,d.81.1.5 107135,107136 1mx3A 347 0.03277 c.2.1.4,c.23.12.1 79638,79639 1t2dA 322 0.03705 c.2.1.5,d.162.1.1 99084,99085 2b0jA 358 0.04229 a.100.1.11,c.2.1.6 127639,127640 1gpjA 404 0.04587 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1li4A 432 0.05205 c.2.1.4,c.23.12.3 84616,84617 1wwkA 307 0.05340 2fssA 365 0.05355 1ldg 316 0.05876 1uxjA 309 0.06506 c.2.1.5,d.162.1.1 108112,108113 1j4aA 333 0.07321 c.2.1.4,c.23.12.1 71502,71503 1d4fA 431 0.07508 c.2.1.4,c.23.12.3 30110,31370 1up6A 416 0.07618 c.2.1.5,d.162.1.2 107976,107977 1ur5A 309 0.07621 c.2.1.5,d.162.1.1 99807,99808 1xwfA 431 0.08730 c.2.1.4,c.23.12.3 122392,122393 1lldA 319 0.08885 c.2.1.5,d.162.1.1 30177,42144 1lssA 140 0.09708 c.2.1.9 74246 1v8bA 479 0.09757 c.2.1.4,c.23.12.3 113564,113565 2j6iA 364 0.1040 1xdwA 331 0.1046 2hk9A 275 0.1097 1pzgA 331 0.1123 c.2.1.5,d.162.1.1 95425,95426 2g76A 335 0.1161 1psdA 409 0.1228 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1omoA 322 0.1247 c.2.1.13 104017 1vllA 334 0.1428 c.2.1.13 108834 1x7dA 350 0.1816 c.2.1.13 114927 1sc6A 404 0.1931 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxy 333 0.2001 1xeaA 323 0.2010 c.2.1.3,d.81.1.5 109572,109573 2dbqA 334 0.2491 1up7A 417 0.3013 c.2.1.5,d.162.1.2 113374,113375 2d0iA 333 0.3289 2o4cA 380 0.4343 2ewdA 317 0.4959 2pi1A 334 0.4974 1s6yA 450 0.5410 c.2.1.5,d.162.1.2 105314,105315 1nytA 271 0.5608 c.2.1.7,c.58.1.5 86417,86418 1hyhA 309 0.6265 c.2.1.5,d.162.1.1 30150,42117 2d5cA 263 0.6664 1obbA 480 0.7829 c.2.1.5,d.162.1.2 86760,86761 1ygyA 529 0.8252 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1vjtA 483 0.8639 c.2.1.5,d.162.1.2 100833,100834 1guzA 310 0.8879 c.2.1.5,d.162.1.1 65586,65587 2vhxA 377 0.8977 1qv9A 283 0.9127 c.127.1.1 96356 2axqA 467 0.9891 6ldhA 329 1.014 c.2.1.5,d.162.1.1 30161,42128 2nvwA 479 1.016 c.2.1.3,d.81.1.5 138665,138666 2i6tA 303 1.176 1f06A 320 1.188 c.2.1.3,d.81.1.3 59556,59557 2eggA 297 1.197 2hmvA 144 1.241 c.2.1.9 136615 2aefA 234 1.435 1npyA 271 1.447 c.2.1.7,c.58.1.5 85995,85996 1a5zA 319 1.520 c.2.1.5,d.162.1.1 30181,42148 1qp8A 303 1.527 c.2.1.4,c.23.12.1 30092,31352 2nloA 302 1.529 1dxyA 333 1.531 c.2.1.4,c.23.12.1 30094,31354 2gcgA 330 1.712 2v7pA 310 1.784 3c85A 183 1.864 1pjcA 361 1.871 c.2.1.4,c.23.12.2 30101,31361 2d59A 144 1.882 c.2.1.8 131266 1gcuA 295 1.959 c.2.1.3,d.81.1.4 30063,39978 1nvtA 287 2.124 c.2.1.7,c.58.1.5 86270,86271 1lehA 364 2.185 c.2.1.7,c.58.1.1 30268,33916 1c1dA 355 2.424 c.2.1.7,c.58.1.1 30270,33918 2vojA 371 2.491 2g1uA 155 2.492 1p77A 272 2.500 c.2.1.7,c.58.1.5 94214,94215 1lsuA 147 3.389 c.2.1.9 74250 2dc1A 236 3.588 2ho3A 325 3.640 2gptA 523 3.779 2glxA 332 3.858 1hdoA 206 4.371 c.2.1.2 60965 2cukA 311 4.504 1ez4A 318 4.669 c.2.1.5,d.162.1.1 64917,64918 2o7sA 523 5.131 1y81A 138 5.298 c.2.1.8 122731 1ofgA 381 5.709 c.2.1.3,d.81.1.5 30064,39979 1a4iA 301 6.223 c.2.1.7,c.58.1.2 30278,33926 1luaA 287 6.547 c.2.1.7,c.58.1.4 78216,78217 3ceaA 346 6.567 1iukA 140 6.606 c.2.1.8 83712 2csuA 457 6.636 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2cmdA 312 7.754 c.2.1.5,d.162.1.1 30135,42102 3c1aA 315 8.510 1vknA 351 10.36 c.2.1.3,d.81.1.1 108676,108677 1j5pA 253 10.47 d.81.1.3,c.2.1.3 71577,83092 1n7hA 381 10.62 c.2.1.2 80250 1lc0A 294 10.82 c.2.1.3,d.81.1.4 73823,73824 1h6dA 433 10.88 c.2.1.3,d.81.1.5 65656,65657 2p2sA 336 10.91 1nvmB 312 10.96 c.2.1.3,d.81.1.1 86251,86252 2z1nA 260 12.34 2czcA 334 12.94 d.81.1.1 131044 1qydA 313 13.05 c.2.1.2 96583 2ph5A 480 14.27 2yx0A 342 14.35 2exxA 306 14.69 1l7dA 384 14.70 c.2.1.4,c.23.12.2 77774,77775 2hjsA 340 14.94 c.2.1.3,d.81.1.1 136547,136548 1vi2A 300 15.03 c.2.1.7,c.58.1.5 100726,100727 1rydA 387 15.30 c.2.1.3,d.81.1.5 118801,118802 1db3A 372 15.34 c.2.1.2 29813 1id1A 153 15.44 c.2.1.9 62286 2a4kA 263 15.96 c.2.1.2 126156 1k2wA 256 15.98 c.2.1.2 90927 1orrA 347 16.65 c.2.1.2 93460 1gegA 256 17.32 c.2.1.2 29888 1k6xA 352 17.92 c.2.1.2 68238 1scuA 288 17.92 c.2.1.8,c.23.4.1 30307,31135 1xseA 295 18.21 c.2.1.2 115925 1xq6A 253 18.28 c.2.1.2 115829 1zh8A 340 18.53 c.2.1.3,d.81.1.5 125077,125078 2nqtA 352 18.81 1e3jA 352 18.91 b.35.1.2,c.2.1.1 24765,29781 2v3aA 384 19.42 1xhlA 297 19.51 c.2.1.2 109591 1t2aA 375 20.21 c.2.1.2 99078 1xkqA 280 20.98 c.2.1.2 115417 1drw 273 22.36 2o23A 265 22.84 c.2.1.2 138884 1xcbA 211 22.93 a.4.5.38,c.2.1.12 109552,109553 1b0aA 288 23.52 c.2.1.7,c.58.1.2 30286,33934 2q4eA 362 23.77 2gz1A 366 23.81 c.2.1.3,d.81.1.1 135887,135888 1q7bA 244 23.84 c.2.1.2 96026 1hxhA 253 23.92 c.2.1.2 76725 2pd6A 264 23.94 1x7gA 261 24.48 c.2.1.2 114929 2dt5A 211 26.02 a.4.5.38,c.2.1.12 131708,131709 1nffA 260 26.40 c.2.1.2 80457 2o4uX 334 26.45 1ydeA 270 27.59 c.2.1.2 122980 2g17A 337 28.74 c.2.1.3,d.81.1.1 134512,134513 1w6uA 302 28.77 c.2.1.2 114288 1e6wA 260 29.92 c.2.1.2 59326 1jw9B 249 30.53 c.111.1.1 67377 1fmcA 255 30.61 c.2.1.2 29856 1l1eA 287 30.91 c.66.1.18 73454 1xgkA 352 31.08 c.2.1.2 115286 1b16A 254 31.87 c.2.1.2 29875 2jahA 247 31.91 2r6jA 318 32.22 1pl8A 356 32.58 b.35.1.2,c.2.1.1 94878,94879 1bxkA 355 33.09 c.2.1.2 29803 1hdcA 253 33.74 c.2.1.2 29862 2gasA 307 34.40 1rkxA 357 34.52 c.2.1.2 97631 2ixaA 444 35.10 1zk4A 251 35.61 c.2.1.2 125176 1ja9A 274 35.71 c.2.1.2 62817 1vl8A 267 36.08 c.2.1.2 108733 1spxA 278 36.18 c.2.1.2 98958 1uufA 369 36.29 b.35.1.2,c.2.1.1 100006,100007 1drwA 273 36.52 c.2.1.3,d.81.1.3 30057,39972 2ozpA 345 37.06 2gdzA 267 37.10 c.2.1.2 135043 2r00A 336 37.32 1xg5A 279 37.84 c.2.1.2 115277 1zmtA 254 37.97 c.2.1.2 125363 2pnfA 248 38.72 2eklA 313 40.00 1hyuA 521 40.29 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2c5aA 379 40.91 c.2.1.2 129894 1e7wA 291 41.36 c.2.1.2 59373 5nul 138 42.47 2cfcA 250 43.97 1sb8A 352 45.14 c.2.1.2 105410 2hsjA 214 45.68 2p4hX 322 48.05 2q46A 253 48.47 c.2.1.2 139825 1rpnA 335 48.55 c.2.1.2 97708 1kewA 361 48.74 c.2.1.2 68544 2bryA 497 49.02 2a9fA 398 49.25 1m1nB 522 50.81 c.92.2.3 78418 1bdbA 277 51.29 c.2.1.2 29874 1fl2A 310 51.40 c.3.1.5,c.3.1.5 59869,59870 1yxmA 303 51.97 c.2.1.2 124192 3bioA 304 52.12 2ph3A 245 52.68 1k7cA 233 53.48 c.23.10.4 68267 1qycA 308 55.26 c.2.1.2 96581 1pwxA 254 55.39 c.2.1.2 95262 2ag5A 246 55.96 c.2.1.2 126719 1zud1 251 56.76 1sbyA 254 56.91 c.2.1.2 118930 1zmdA 474 57.15 2nwqA 272 57.27 1zd8A 227 57.41 2b69A 343 57.62 c.2.1.2 127974 1hwxA 501 58.10 c.2.1.7,c.58.1.1 30250,33898 1yqzA 438 58.36 2jhfA 374 58.53 b.35.1.2,c.2.1.1 138314,138315 1l9cA 389 59.76 c.3.1.2,d.16.1.3 77815,77816 2fdxA 138 60.33 c.23.5.1 31192 1in4A 334 62.12 a.4.5.11,c.37.1.20 62597,62598 2qa1A 500 62.18 1cf2O 337 62.56 c.2.1.3,d.81.1.1 29994,39909 1nhp 447 63.00 1xhcA 367 65.08 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1yb2A 275 65.44 c.66.1.13 122868 1x13A 401 66.65 2q49A 359 69.02 c.2.1.3,d.81.1.1 139831,139832 2c07A 285 69.12 c.2.1.2 129577 2blnA 305 69.13 b.46.1.1,c.65.1.1 128734,128735 1vj0A 380 69.23 b.35.1.2,c.2.1.1 100786,100787 1y1pA 342 69.67 c.2.1.2 122550 2nqrA 411 70.30 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2bzgA 232 70.78 c.66.1.36 129559 1yovA 537 71.10 c.111.1.2 123785 1kpgA 287 73.09 c.66.1.18 68735 1xu9A 286 73.34 c.2.1.2 116052 2pwyA 258 74.09 1i2cA 404 74.22 c.2.1.2 83666 1oi7A 288 75.78 c.2.1.8,c.23.4.1 87049,87050 2p91A 285 77.50 2yutA 207 78.01 2cmgA 262 80.03 1vqwA 457 80.28 c.3.1.5,c.3.1.5 114028,114029 2bgkA 278 81.13 c.2.1.2 128480 2gqwA 408 81.17 1cydA 244 81.27 c.2.1.2 29825 2r0cA 549 81.55 1xviA 275 83.56 c.108.1.10 116088 1x1eA 239 83.70 2gf3A 389 83.90 c.3.1.2,d.16.1.3 135070,135071 2c29D 337 84.03 1zq9A 285 84.76 c.66.1.24 125505 3grs 478 85.38 1bgvA 449 85.90 c.2.1.7,c.58.1.1 30217,33865 1oc2A 348 86.04 c.2.1.2 92765 2nxcA 254 87.63 c.66.1.39 138739 1eq2A 310 88.06 c.2.1.2 29814