# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 1.17e-11 2h78A 302 1.41e-11 1vpdA 299 9.02e-11 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 1.07e-10 2rcyA 262 1.17e-10 2ahrA 259 1.17e-10 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 2.49e-10 2f1kA 279 5.47e-10 a.100.1.12,c.2.1.6 132772,132773 1yqgA 263 6.10e-10 2pgdA 482 7.10e-10 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 1.16e-09 2cvzA 289 1.24e-09 a.100.1.1,c.2.1.6 130890,130891 2g5cA 281 1.87e-09 a.100.1.12,c.2.1.6 134646,134647 2graA 277 1.98e-09 2pv7A 298 3.71e-09 1np3A 338 6.56e-09 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 1.19e-08 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 1.92e-08 3c24A 286 4.56e-08 1i36A 264 1.76e-07 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 2.90e-07 1ks9A 291 3.97e-07 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 4.94e-07 a.100.1.6,c.2.1.6 112775,112776 1yrlA 491 6.77e-07 2ew2A 316 1.12e-06 1qmgA 524 1.37e-06 a.100.1.2,c.2.1.6 18785,30182 1evyA 366 1.50e-06 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 1.58e-06 2o3jA 481 5.91e-06 1dljA 402 8.56e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 8.60e-06 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 1.04e-05 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1z82A 335 2.23e-05 1dliA 402 2.73e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zcjA 463 0.000115 1jayA 212 0.000149 c.2.1.6 66478 1bg6A 359 0.001454 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.002711 1ff9A 450 0.003948 c.2.1.3,d.81.1.2 30039,39954 2qytA 317 0.007689 1x0vA 354 0.007967 1gdhA 320 0.02072 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.02871 c.2.1.4,c.23.12.1 30088,31348 1u8xX 472 0.03874 c.2.1.5,d.162.1.2 107741,107742 1mx3A 347 0.04731 c.2.1.4,c.23.12.1 79638,79639 1t2dA 322 0.04825 c.2.1.5,d.162.1.1 99084,99085 1tltA 319 0.05374 c.2.1.3,d.81.1.5 107135,107136 2b0jA 358 0.05569 a.100.1.11,c.2.1.6 127639,127640 1ldg 316 0.06337 1gpjA 404 0.06508 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1li4A 432 0.07347 c.2.1.4,c.23.12.3 84616,84617 2fssA 365 0.07451 1j4aA 333 0.08669 c.2.1.4,c.23.12.1 71502,71503 1wwkA 307 0.08678 1uxjA 309 0.09075 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 0.09480 c.2.1.5,d.162.1.1 99807,99808 1up6A 416 0.1081 c.2.1.5,d.162.1.2 107976,107977 1pzgA 331 0.1089 c.2.1.5,d.162.1.1 95425,95426 1d4fA 431 0.1112 c.2.1.4,c.23.12.3 30110,31370 1lldA 319 0.1156 c.2.1.5,d.162.1.1 30177,42144 1xwfA 431 0.1299 c.2.1.4,c.23.12.3 122392,122393 1omoA 322 0.1331 c.2.1.13 104017 2j6iA 364 0.1364 2hk9A 275 0.1449 1psdA 409 0.1505 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1v8bA 479 0.1514 c.2.1.4,c.23.12.3 113564,113565 1vllA 334 0.1539 c.2.1.13 108834 1lssA 140 0.1767 c.2.1.9 74246 1xdwA 331 0.1825 2g76A 335 0.1878 1dxy 333 0.2230 1x7dA 350 0.2580 c.2.1.13 114927 1sc6A 404 0.2682 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xeaA 323 0.3337 c.2.1.3,d.81.1.5 109572,109573 2d0iA 333 0.3672 1up7A 417 0.3730 c.2.1.5,d.162.1.2 113374,113375 2dbqA 334 0.3856 2o4cA 380 0.4486 2ewdA 317 0.5398 2pi1A 334 0.5637 2d5cA 263 0.5877 1obbA 480 0.6101 c.2.1.5,d.162.1.2 86760,86761 1nytA 271 0.6107 c.2.1.7,c.58.1.5 86417,86418 1s6yA 450 0.7285 c.2.1.5,d.162.1.2 105314,105315 1hyhA 309 0.7922 c.2.1.5,d.162.1.1 30150,42117 1ygyA 529 0.8551 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1guzA 310 0.8888 c.2.1.5,d.162.1.1 65586,65587 1qv9A 283 0.9456 c.127.1.1 96356 6ldhA 329 0.9506 c.2.1.5,d.162.1.1 30161,42128 2nvwA 479 0.9857 c.2.1.3,d.81.1.5 138665,138666 2i6tA 303 1.026 2axqA 467 1.052 1f06A 320 1.174 c.2.1.3,d.81.1.3 59556,59557 2vhxA 377 1.192 2eggA 297 1.216 1vjtA 483 1.346 c.2.1.5,d.162.1.2 100833,100834 1dxyA 333 1.390 c.2.1.4,c.23.12.1 30094,31354 1npyA 271 1.406 c.2.1.7,c.58.1.5 85995,85996 2v7pA 310 1.734 2nloA 302 1.802 1a5zA 319 1.969 c.2.1.5,d.162.1.1 30181,42148 2d59A 144 1.987 c.2.1.8 131266 1pjcA 361 2.013 c.2.1.4,c.23.12.2 30101,31361 2hmvA 144 2.021 c.2.1.9 136615 1gcuA 295 2.047 c.2.1.3,d.81.1.4 30063,39978 1p77A 272 2.048 c.2.1.7,c.58.1.5 94214,94215 2gcgA 330 2.116 1nvtA 287 2.256 c.2.1.7,c.58.1.5 86270,86271 1lehA 364 2.260 c.2.1.7,c.58.1.1 30268,33916 3c85A 183 2.518 2aefA 234 2.669 1qp8A 303 2.669 c.2.1.4,c.23.12.1 30092,31352 2vojA 371 2.674 1c1dA 355 2.881 c.2.1.7,c.58.1.1 30270,33918 2gptA 523 3.403 2glxA 332 3.885 2ho3A 325 3.897 1ez4A 318 4.053 c.2.1.5,d.162.1.1 64917,64918 2o7sA 523 4.422 1hdoA 206 4.543 c.2.1.2 60965 2dc1A 236 4.602 1y81A 138 4.748 c.2.1.8 122731 1lsuA 147 4.795 c.2.1.9 74250 2cukA 311 4.843 2g1uA 155 4.976 1a4iA 301 5.751 c.2.1.7,c.58.1.2 30278,33926 1iukA 140 5.924 c.2.1.8 83712 2cmdA 312 6.091 c.2.1.5,d.162.1.1 30135,42102 2csuA 457 6.437 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1luaA 287 6.500 c.2.1.7,c.58.1.4 78216,78217 1ofgA 381 7.291 c.2.1.3,d.81.1.5 30064,39979 3ceaA 346 7.487 1j5pA 253 7.787 d.81.1.3,c.2.1.3 71577,83092 1vknA 351 8.545 c.2.1.3,d.81.1.1 108676,108677 1nvmB 312 9.103 c.2.1.3,d.81.1.1 86251,86252 3c1aA 315 9.379 1n7hA 381 9.409 c.2.1.2 80250 1scuA 288 10.90 c.2.1.8,c.23.4.1 30307,31135 1h6dA 433 11.12 c.2.1.3,d.81.1.5 65656,65657 2hjsA 340 11.28 c.2.1.3,d.81.1.1 136547,136548 1l7dA 384 11.54 c.2.1.4,c.23.12.2 77774,77775 2p2sA 336 11.97 2czcA 334 12.34 d.81.1.1 131044 1lc0A 294 12.55 c.2.1.3,d.81.1.4 73823,73824 1k2wA 256 14.03 c.2.1.2 90927 2exxA 306 14.04 2z1nA 260 14.46 2nqtA 352 15.79 1vi2A 300 15.86 c.2.1.7,c.58.1.5 100726,100727 1qydA 313 16.10 c.2.1.2 96583 2gz1A 366 16.41 c.2.1.3,d.81.1.1 135887,135888 1k6xA 352 16.70 c.2.1.2 68238 1xseA 295 16.77 c.2.1.2 115925 2ph5A 480 16.90 1rydA 387 16.98 c.2.1.3,d.81.1.5 118801,118802 1db3A 372 17.49 c.2.1.2 29813 1bxkA 355 17.55 c.2.1.2 29803 1orrA 347 17.71 c.2.1.2 93460 1gegA 256 17.95 c.2.1.2 29888 1drw 273 18.13 1e3jA 352 18.30 b.35.1.2,c.2.1.1 24765,29781 1t2aA 375 18.33 c.2.1.2 99078 2a4kA 263 18.46 c.2.1.2 126156 2q4eA 362 18.59 1b0aA 288 19.12 c.2.1.7,c.58.1.2 30286,33934 1xq6A 253 20.02 c.2.1.2 115829 2yx0A 342 20.77 1xhlA 297 20.87 c.2.1.2 109591 2v3aA 384 21.01 1x7gA 261 21.69 c.2.1.2 114929 1xkqA 280 22.59 c.2.1.2 115417 1id1A 153 23.82 c.2.1.9 62286 1jw9B 249 24.10 c.111.1.1 67377 2o23A 265 24.29 c.2.1.2 138884 2r00A 336 24.83 1xcbA 211 24.92 a.4.5.38,c.2.1.12 109552,109553 1rkxA 357 24.98 c.2.1.2 97631 1pl8A 356 26.05 b.35.1.2,c.2.1.1 94878,94879 1kewA 361 26.85 c.2.1.2 68544 2g17A 337 29.34 c.2.1.3,d.81.1.1 134512,134513 2dt5A 211 29.77 a.4.5.38,c.2.1.12 131708,131709 1uufA 369 29.79 b.35.1.2,c.2.1.1 100006,100007 1xgkA 352 29.90 c.2.1.2 115286 2jahA 247 30.13 1w6uA 302 30.84 c.2.1.2 114288 1drwA 273 31.08 c.2.1.3,d.81.1.3 30057,39972 1hxhA 253 31.31 c.2.1.2 76725 2ozpA 345 31.62 1ydeA 270 31.91 c.2.1.2 122980 1l1eA 287 32.16 c.66.1.18 73454 2ixaA 444 32.18 1b16A 254 32.46 c.2.1.2 29875 1q7bA 244 32.85 c.2.1.2 96026 1fmcA 255 33.23 c.2.1.2 29856 2o4uX 334 33.55 1ja9A 274 33.58 c.2.1.2 62817 2gasA 307 33.98 2pd6A 264 34.15 1zh8A 340 34.19 c.2.1.3,d.81.1.5 125077,125078 3bioA 304 35.11 1vl8A 267 35.34 c.2.1.2 108733 1xg5A 279 36.99 c.2.1.2 115277 1spxA 278 37.51 c.2.1.2 98958 2pnfA 248 37.53 1nffA 260 38.62 c.2.1.2 80457 1rpnA 335 38.78 c.2.1.2 97708 1e6wA 260 39.19 c.2.1.2 59326 1zk4A 251 39.33 c.2.1.2 125176 2eklA 313 41.20 2q46A 253 42.05 c.2.1.2 139825 2hsjA 214 42.44 1sb8A 352 42.47 c.2.1.2 105410 5nul 138 42.64 1cf2O 337 43.40 c.2.1.3,d.81.1.1 29994,39909 2cdcA 366 44.00 1zmtA 254 44.08 c.2.1.2 125363 2r6jA 318 44.16 2p4hX 322 44.71 1qycA 308 45.35 c.2.1.2 96581 1zd8A 227 45.82 2gdzA 267 46.29 c.2.1.2 135043 2bryA 497 47.10 1zud1 251 47.33 1hdcA 253 47.51 c.2.1.2 29862 2c5aA 379 48.42 c.2.1.2 129894 1yxmA 303 48.55 c.2.1.2 124192 1k7cA 233 49.23 c.23.10.4 68267 1oc2A 348 50.12 c.2.1.2 92765 2cfcA 250 51.71 1e7wA 291 51.94 c.2.1.2 59373 2a9fA 398 52.58 1hyuA 521 52.69 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2b69A 343 54.01 c.2.1.2 127974 1in4A 334 54.19 a.4.5.11,c.37.1.20 62597,62598 2ph3A 245 54.22 1dv2A 452 54.29 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1sbyA 254 54.47 c.2.1.2 118930 1x13A 401 55.43 2ag5A 246 55.94 c.2.1.2 126719 1pwxA 254 56.23 c.2.1.2 95262 2jhfA 374 57.08 b.35.1.2,c.2.1.1 138314,138315 1yqzA 438 58.83 1m1nB 522 60.20 c.92.2.3 78418 2nwqA 272 60.40 2p91A 285 61.29 1zmdA 474 62.35 2qa1A 500 63.15 1l9cA 389 63.57 c.3.1.2,d.16.1.3 77815,77816 1xu9A 286 64.68 c.2.1.2 116052 1o6zA 303 65.51 c.2.1.5,d.162.1.1 81107,81108 1bdbA 277 65.54 c.2.1.2 29874 2blnA 305 66.35 b.46.1.1,c.65.1.1 128734,128735 1vj0A 380 67.11 b.35.1.2,c.2.1.1 100786,100787 1hwxA 501 67.12 c.2.1.7,c.58.1.1 30250,33898 2d8aA 348 67.49 2nqrA 411 68.44 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2fdxA 138 68.88 c.23.5.1 31192 1pjqA 457 69.49 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1nhp 447 69.63 2c07A 285 70.47 c.2.1.2 129577 2yutA 207 72.30 2r0cA 549 72.57 2gqwA 408 72.96 1fl2A 310 74.93 c.3.1.5,c.3.1.5 59869,59870 2bzgA 232 75.63 c.66.1.36 129559 1y1pA 342 76.95 c.2.1.2 122550 2b5wA 357 77.57 2z1mA 345 78.67 2gf3A 389 80.43 c.3.1.2,d.16.1.3 135070,135071 1eq2A 310 81.50 c.2.1.2 29814 1kpgA 287 82.95 c.66.1.18 68735 1cydA 244 83.41 c.2.1.2 29825 1yzfA 195 83.66 c.23.10.5 124275 2pn1A 331 84.19 1i2cA 404 84.74 c.2.1.2 83666 1oi7A 288 84.82 c.2.1.8,c.23.4.1 87049,87050 1bgvA 449 85.15 c.2.1.7,c.58.1.1 30217,33865 2cmgA 262 85.68 1x1eA 239 85.84 1zq9A 285 88.30 c.66.1.24 125505 2bgkA 278 89.09 c.2.1.2 128480 1othA 321 89.69 c.78.1.1,c.78.1.1 35260,35261