# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 2.64e-12 2h78A 302 4.05e-12 1vpdA 299 2.61e-11 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 3.23e-11 2rcyA 262 3.89e-11 2ahrA 259 4.31e-11 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 1.11e-10 1yqgA 263 1.91e-10 2f1kA 279 1.92e-10 a.100.1.12,c.2.1.6 132772,132773 2pgdA 482 2.46e-10 a.100.1.1,c.2.1.6 18778,30190 2cvzA 289 3.44e-10 a.100.1.1,c.2.1.6 130890,130891 2p4qA 497 5.16e-10 2g5cA 281 7.53e-10 a.100.1.12,c.2.1.6 134646,134647 2graA 277 8.68e-10 2pv7A 298 1.39e-09 1np3A 338 3.30e-09 a.100.1.2,c.2.1.6 85946,85947 1pgjA 478 4.69e-09 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 8.22e-09 3c24A 286 2.40e-08 1i36A 264 6.14e-08 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 1.42e-07 1ks9A 291 1.97e-07 a.100.1.7,c.2.1.6 68857,68858 1txgA 335 2.46e-07 a.100.1.6,c.2.1.6 112775,112776 1yrlA 491 4.41e-07 1qmgA 524 6.43e-07 a.100.1.2,c.2.1.6 18785,30182 2ew2A 316 6.49e-07 1evyA 366 7.85e-07 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 8.52e-07 2o3jA 481 2.07e-06 1mv8A 436 5.31e-06 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1f0yA 302 5.50e-06 a.100.1.3,c.2.1.6 18793,30197 1dljA 402 5.92e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1z82A 335 1.10e-05 1dliA 402 1.69e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1zcjA 463 6.58e-05 1jayA 212 0.000104 c.2.1.6 66478 1bg6A 359 0.000786 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.002462 1ff9A 450 0.002514 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.005517 2qytA 317 0.006220 1gdhA 320 0.01310 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.01507 c.2.1.4,c.23.12.1 30088,31348 1u8xX 472 0.02864 c.2.1.5,d.162.1.2 107741,107742 1mx3A 347 0.03330 c.2.1.4,c.23.12.1 79638,79639 1t2dA 322 0.03579 c.2.1.5,d.162.1.1 99084,99085 2b0jA 358 0.04751 a.100.1.11,c.2.1.6 127639,127640 1gpjA 404 0.04976 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2fssA 365 0.05144 1ldg 316 0.05148 1tltA 319 0.05250 c.2.1.3,d.81.1.5 107135,107136 1li4A 432 0.05698 c.2.1.4,c.23.12.3 84616,84617 1j4aA 333 0.06309 c.2.1.4,c.23.12.1 71502,71503 1wwkA 307 0.06311 1lldA 319 0.07244 c.2.1.5,d.162.1.1 30177,42144 1uxjA 309 0.07535 c.2.1.5,d.162.1.1 108112,108113 1up6A 416 0.08311 c.2.1.5,d.162.1.2 107976,107977 1pzgA 331 0.08747 c.2.1.5,d.162.1.1 95425,95426 1ur5A 309 0.08847 c.2.1.5,d.162.1.1 99807,99808 1d4fA 431 0.08892 c.2.1.4,c.23.12.3 30110,31370 1xwfA 431 0.09628 c.2.1.4,c.23.12.3 122392,122393 1omoA 322 0.1002 c.2.1.13 104017 2j6iA 364 0.1029 2hk9A 275 0.1122 1xdwA 331 0.1155 1psdA 409 0.1219 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2g76A 335 0.1229 1lssA 140 0.1240 c.2.1.9 74246 1vllA 334 0.1387 c.2.1.13 108834 1v8bA 479 0.1410 c.2.1.4,c.23.12.3 113564,113565 1dxy 333 0.1721 1x7dA 350 0.1938 c.2.1.13 114927 1sc6A 404 0.2146 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2dbqA 334 0.2386 1xeaA 323 0.2678 c.2.1.3,d.81.1.5 109572,109573 1up7A 417 0.2909 c.2.1.5,d.162.1.2 113374,113375 2d0iA 333 0.3028 2o4cA 380 0.3678 2ewdA 317 0.4368 2pi1A 334 0.4730 2d5cA 263 0.4971 1nytA 271 0.5082 c.2.1.7,c.58.1.5 86417,86418 1hyhA 309 0.5539 c.2.1.5,d.162.1.1 30150,42117 1qv9A 283 0.5608 c.127.1.1 96356 1s6yA 450 0.5998 c.2.1.5,d.162.1.2 105314,105315 1ygyA 529 0.6063 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1obbA 480 0.6758 c.2.1.5,d.162.1.2 86760,86761 6ldhA 329 0.7653 c.2.1.5,d.162.1.1 30161,42128 2axqA 467 0.8023 2nvwA 479 0.8123 c.2.1.3,d.81.1.5 138665,138666 1guzA 310 0.8422 c.2.1.5,d.162.1.1 65586,65587 2eggA 297 0.8992 1f06A 320 0.9849 c.2.1.3,d.81.1.3 59556,59557 2i6tA 303 1.021 1npyA 271 1.102 c.2.1.7,c.58.1.5 85995,85996 1dxyA 333 1.129 c.2.1.4,c.23.12.1 30094,31354 2vhxA 377 1.134 1vjtA 483 1.188 c.2.1.5,d.162.1.2 100833,100834 2nloA 302 1.318 2gcgA 330 1.438 1a5zA 319 1.567 c.2.1.5,d.162.1.1 30181,42148 1nvtA 287 1.623 c.2.1.7,c.58.1.5 86270,86271 2v7pA 310 1.639 1p77A 272 1.825 c.2.1.7,c.58.1.5 94214,94215 1lehA 364 1.848 c.2.1.7,c.58.1.1 30268,33916 2hmvA 144 1.911 c.2.1.9 136615 1pjcA 361 1.932 c.2.1.4,c.23.12.2 30101,31361 1gcuA 295 2.076 c.2.1.3,d.81.1.4 30063,39978 1qp8A 303 2.092 c.2.1.4,c.23.12.1 30092,31352 2vojA 371 2.099 2gptA 523 2.466 3c85A 183 2.708 2d59A 144 2.711 c.2.1.8 131266 1c1dA 355 2.749 c.2.1.7,c.58.1.1 30270,33918 2aefA 234 3.008 2o7sA 523 3.066 1hdoA 206 3.281 c.2.1.2 60965 2ho3A 325 3.449 1ez4A 318 3.583 c.2.1.5,d.162.1.1 64917,64918 2cukA 311 3.755 1lsuA 147 3.885 c.2.1.9 74250 2g1uA 155 4.658 2dc1A 236 4.720 1j5pA 253 5.115 d.81.1.3,c.2.1.3 71577,83092 1a4iA 301 5.729 c.2.1.7,c.58.1.2 30278,33926 2glxA 332 6.272 2csuA 457 6.369 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2cmdA 312 6.806 c.2.1.5,d.162.1.1 30135,42102 1luaA 287 7.010 c.2.1.7,c.58.1.4 78216,78217 3c1aA 315 7.822 1n7hA 381 8.262 c.2.1.2 80250 1ofgA 381 8.552 c.2.1.3,d.81.1.5 30064,39979 1scuA 288 9.408 c.2.1.8,c.23.4.1 30307,31135 2ph5A 480 9.589 1vknA 351 9.603 c.2.1.3,d.81.1.1 108676,108677 2p2sA 336 9.812 1iukA 140 10.19 c.2.1.8 83712 1nvmB 312 10.40 c.2.1.3,d.81.1.1 86251,86252 1y81A 138 10.49 c.2.1.8 122731 3ceaA 346 10.64 1lc0A 294 11.24 c.2.1.3,d.81.1.4 73823,73824 2czcA 334 11.66 d.81.1.1 131044 2hjsA 340 13.39 c.2.1.3,d.81.1.1 136547,136548 2exxA 306 13.48 1qydA 313 13.66 c.2.1.2 96583 1db3A 372 13.84 c.2.1.2 29813 1k6xA 352 14.14 c.2.1.2 68238 1l7dA 384 14.32 c.2.1.4,c.23.12.2 77774,77775 2yx0A 342 14.65 2z1nA 260 14.92 1vi2A 300 14.93 c.2.1.7,c.58.1.5 100726,100727 1h6dA 433 14.93 c.2.1.3,d.81.1.5 65656,65657 2a4kA 263 15.27 c.2.1.2 126156 2gz1A 366 15.54 c.2.1.3,d.81.1.1 135887,135888 1bxkA 355 15.66 c.2.1.2 29803 1k2wA 256 16.48 c.2.1.2 90927 2q4eA 362 16.50 1orrA 347 16.81 c.2.1.2 93460 1b0aA 288 16.86 c.2.1.7,c.58.1.2 30286,33934 1xhlA 297 16.96 c.2.1.2 109591 2nqtA 352 17.25 1gegA 256 17.43 c.2.1.2 29888 1xq6A 253 17.54 c.2.1.2 115829 1t2aA 375 17.83 c.2.1.2 99078 1xseA 295 18.06 c.2.1.2 115925 1jw9B 249 18.27 c.111.1.1 67377 1drw 273 18.57 1e3jA 352 18.73 b.35.1.2,c.2.1.1 24765,29781 1xkqA 280 19.53 c.2.1.2 115417 2q46A 253 23.37 c.2.1.2 139825 2v3aA 384 23.90 1rydA 387 24.07 c.2.1.3,d.81.1.5 118801,118802 1hxhA 253 24.24 c.2.1.2 76725 2o23A 265 24.80 c.2.1.2 138884 1l1eA 287 26.98 c.66.1.18 73454 1q7bA 244 27.09 c.2.1.2 96026 1id1A 153 27.11 c.2.1.9 62286 1x7gA 261 27.34 c.2.1.2 114929 2g17A 337 27.36 c.2.1.3,d.81.1.1 134512,134513 1nffA 260 27.75 c.2.1.2 80457 1fmcA 255 29.06 c.2.1.2 29856 1kewA 361 29.53 c.2.1.2 68544 1w6uA 302 29.64 c.2.1.2 114288 1ja9A 274 29.66 c.2.1.2 62817 1xgkA 352 29.99 c.2.1.2 115286 2jahA 247 30.19 3bioA 304 30.75 2hsjA 214 31.64 1rkxA 357 31.66 c.2.1.2 97631 1b16A 254 32.67 c.2.1.2 29875 2ozpA 345 32.75 2r00A 336 33.21 1sb8A 352 34.51 c.2.1.2 105410 1zud1 251 34.66 1vl8A 267 34.84 c.2.1.2 108733 1ydeA 270 35.25 c.2.1.2 122980 1pl8A 356 35.59 b.35.1.2,c.2.1.1 94878,94879 2eklA 313 36.12 1uufA 369 36.35 b.35.1.2,c.2.1.1 100006,100007 1drwA 273 36.59 c.2.1.3,d.81.1.3 30057,39972 2gasA 307 36.65 2p4hX 322 36.81 1xcbA 211 36.87 a.4.5.38,c.2.1.12 109552,109553 2dt5A 211 37.01 a.4.5.38,c.2.1.12 131708,131709 1spxA 278 37.23 c.2.1.2 98958 1k7cA 233 37.58 c.23.10.4 68267 1hdcA 253 39.11 c.2.1.2 29862 1zk4A 251 39.23 c.2.1.2 125176 2pnfA 248 39.66 2ixaA 444 39.83 2c5aA 379 40.47 c.2.1.2 129894 1e6wA 260 41.52 c.2.1.2 59326 2pd6A 264 42.82 1zd8A 227 43.69 1cf2O 337 44.29 c.2.1.3,d.81.1.1 29994,39909 1oc2A 348 44.95 c.2.1.2 92765 1yxmA 303 45.32 c.2.1.2 124192 1rpnA 335 46.08 c.2.1.2 97708 2a9fA 398 46.14 5nul 138 46.43 2ag5A 246 46.53 c.2.1.2 126719 1e7wA 291 46.95 c.2.1.2 59373 1qycA 308 47.22 c.2.1.2 96581 1xg5A 279 47.72 c.2.1.2 115277 2cfcA 250 48.07 1hwxA 501 48.52 c.2.1.7,c.58.1.1 30250,33898 1zmtA 254 48.67 c.2.1.2 125363 1in4A 334 49.95 a.4.5.11,c.37.1.20 62597,62598 2b69A 343 50.22 c.2.1.2 127974 2ph3A 245 50.63 1hyuA 521 51.21 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2gdzA 267 51.87 c.2.1.2 135043 2r6jA 318 53.37 1zh8A 340 54.50 c.2.1.3,d.81.1.5 125077,125078 1oi7A 288 55.84 c.2.1.8,c.23.4.1 87049,87050 1yqzA 438 56.33 2o4uX 334 57.63 1x13A 401 58.05 1l9cA 389 58.36 c.3.1.2,d.16.1.3 77815,77816 1sbyA 254 58.80 c.2.1.2 118930 1vj0A 380 59.53 b.35.1.2,c.2.1.1 100786,100787 2cdcA 366 61.39 2nqrA 411 61.57 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2bryA 497 62.03 1dv2A 452 62.32 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2bzgA 232 62.90 c.66.1.36 129559 1m1nB 522 64.49 c.92.2.3 78418 2jhfA 374 64.96 b.35.1.2,c.2.1.1 138314,138315 1bgvA 449 65.92 c.2.1.7,c.58.1.1 30217,33865 1pwxA 254 67.15 c.2.1.2 95262 2blnA 305 67.16 b.46.1.1,c.65.1.1 128734,128735 2c07A 285 67.84 c.2.1.2 129577 1yovA 537 70.78 c.111.1.2 123785 1bdbA 277 71.02 c.2.1.2 29874 1cydA 244 71.42 c.2.1.2 29825 2p91A 285 71.65 1xhcA 367 72.29 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 1zmdA 474 72.64 1nhp 447 73.24 1o6zA 303 73.42 c.2.1.5,d.162.1.1 81107,81108 2gf3A 389 73.99 c.3.1.2,d.16.1.3 135070,135071 1i2cA 404 74.73 c.2.1.2 83666 1kevA 351 74.80 b.35.1.2,c.2.1.1 24749,29765 2fdxA 138 75.02 c.23.5.1 31192 2qa1A 500 75.42 1fl2A 310 75.50 c.3.1.5,c.3.1.5 59869,59870 2nwqA 272 75.67 1eyzA 392 76.81 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1othA 321 77.28 c.78.1.1,c.78.1.1 35260,35261 1y1pA 342 77.92 c.2.1.2 122550 1yzfA 195 78.16 c.23.10.5 124275 1pjqA 457 78.43 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1vqwA 457 79.27 c.3.1.5,c.3.1.5 114028,114029 1zq9A 285 79.47 c.66.1.24 125505 1jqbA 351 79.60 b.35.1.2,c.2.1.1 77151,77152 1x1eA 239 79.63 2pn1A 331 79.87 1kjqA 391 80.81 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 2r0cA 549 81.06 1duvG 333 82.66 c.78.1.1,c.78.1.1 35228,35229 2bgkA 278 84.79 c.2.1.2 128480 2yutA 207 85.73 3c4aA 381 86.05 1gnd 447 87.47 2h6eA 344 87.60 1x1tA 260 88.03 c.2.1.2 121597 2cmgA 262 88.71 2gqwA 408 88.96 1aj2A 282 89.42 c.1.21.1 29665 2z1mA 345 89.61