# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h78A 302 1.30e-10 1yb4A 295 1.75e-10 2i76A 276 4.51e-10 2rcyA 262 6.43e-10 1vpdA 299 6.95e-10 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 1.28e-09 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 1.81e-09 2pgdA 482 2.77e-09 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 4.59e-09 1yqgA 263 5.13e-09 2f1kA 279 5.60e-09 a.100.1.12,c.2.1.6 132772,132773 2cvzA 289 8.00e-09 a.100.1.1,c.2.1.6 130890,130891 2graA 277 1.53e-08 2pv7A 298 1.53e-08 2g5cA 281 1.70e-08 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 5.60e-08 a.100.1.2,c.2.1.6 85946,85947 2pgd 482 8.25e-08 1pgjA 478 9.38e-08 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 3.30e-07 1i36A 264 8.72e-07 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 1.01e-06 a.100.1.7,c.2.1.6 68857,68858 1bg6 359 1.02e-06 1txgA 335 1.95e-06 a.100.1.6,c.2.1.6 112775,112776 1yrlA 491 2.00e-06 1qmgA 524 2.15e-06 a.100.1.2,c.2.1.6 18785,30182 2ew2A 316 4.95e-06 1evyA 366 5.20e-06 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 6.51e-06 2o3jA 481 1.01e-05 1f0yA 302 2.19e-05 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 2.24e-05 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dljA 402 5.60e-05 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 6.63e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 0.000111 1zcjA 463 0.000198 1jayA 212 0.000303 c.2.1.6 66478 1bg6A 359 0.002697 a.100.1.5,c.2.1.6 18810,30214 2dpoA 319 0.005187 1ff9A 450 0.005703 c.2.1.3,d.81.1.2 30039,39954 1x0vA 354 0.009694 1gdhA 320 0.02405 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.02983 c.2.1.4,c.23.12.1 30088,31348 2qytA 317 0.03260 1u8xX 472 0.04981 c.2.1.5,d.162.1.2 107741,107742 1tltA 319 0.05395 c.2.1.3,d.81.1.5 107135,107136 1t2dA 322 0.06720 c.2.1.5,d.162.1.1 99084,99085 1mx3A 347 0.07676 c.2.1.4,c.23.12.1 79638,79639 1ldg 316 0.09313 1wwkA 307 0.09780 2b0jA 358 0.1042 a.100.1.11,c.2.1.6 127639,127640 2fssA 365 0.1043 1xdwA 331 0.1078 1lldA 319 0.1196 c.2.1.5,d.162.1.1 30177,42144 1j4aA 333 0.1206 c.2.1.4,c.23.12.1 71502,71503 1vllA 334 0.1359 c.2.1.13 108834 2j6iA 364 0.1486 1xwfA 431 0.1560 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 0.1629 c.2.1.4,c.23.12.3 30110,31370 2g76A 335 0.1728 1lssA 140 0.1756 c.2.1.9 74246 1li4A 432 0.1814 c.2.1.4,c.23.12.3 84616,84617 1up6A 416 0.1824 c.2.1.5,d.162.1.2 107976,107977 1omoA 322 0.1826 c.2.1.13 104017 2hk9A 275 0.1892 1psdA 409 0.2024 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1uxjA 309 0.2162 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 0.2171 c.2.1.5,d.162.1.1 99807,99808 1dxy 333 0.2352 1pzgA 331 0.2367 c.2.1.5,d.162.1.1 95425,95426 1x7dA 350 0.2581 c.2.1.13 114927 1v8bA 479 0.2821 c.2.1.4,c.23.12.3 113564,113565 1sc6A 404 0.2848 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1xeaA 323 0.2962 c.2.1.3,d.81.1.5 109572,109573 1gpjA 404 0.2999 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1up7A 417 0.3531 c.2.1.5,d.162.1.2 113374,113375 2dbqA 334 0.3586 2d0iA 333 0.5032 1obbA 480 0.6325 c.2.1.5,d.162.1.2 86760,86761 2o4cA 380 0.6400 1s6yA 450 0.6547 c.2.1.5,d.162.1.2 105314,105315 2ewdA 317 0.8643 2d5cA 263 0.8842 1hyhA 309 0.8893 c.2.1.5,d.162.1.1 30150,42117 2hmvA 144 0.9539 c.2.1.9 136615 1qp8A 303 1.004 c.2.1.4,c.23.12.1 30092,31352 1guzA 310 1.007 c.2.1.5,d.162.1.1 65586,65587 2pi1A 334 1.027 6ldhA 329 1.064 c.2.1.5,d.162.1.1 30161,42128 1nytA 271 1.115 c.2.1.7,c.58.1.5 86417,86418 1ygyA 529 1.150 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1lsuA 147 1.196 c.2.1.9 74250 2nloA 302 1.212 1f06A 320 1.230 c.2.1.3,d.81.1.3 59556,59557 2nvwA 479 1.337 c.2.1.3,d.81.1.5 138665,138666 2axqA 467 1.386 2glxA 332 1.457 1npyA 271 1.534 c.2.1.7,c.58.1.5 85995,85996 1qv9A 283 1.616 c.127.1.1 96356 2eggA 297 1.689 2ho3A 325 1.785 2gcgA 330 1.812 1gcuA 295 1.917 c.2.1.3,d.81.1.4 30063,39978 1nvtA 287 1.948 c.2.1.7,c.58.1.5 86270,86271 2i6tA 303 1.986 1pjcA 361 2.016 c.2.1.4,c.23.12.2 30101,31361 2v7pA 310 2.086 1vjtA 483 2.375 c.2.1.5,d.162.1.2 100833,100834 2cukA 311 2.419 2d59A 144 2.462 c.2.1.8 131266 1c1dA 355 2.497 c.2.1.7,c.58.1.1 30270,33918 2vhxA 377 2.552 1p77A 272 2.615 c.2.1.7,c.58.1.5 94214,94215 1a5zA 319 2.935 c.2.1.5,d.162.1.1 30181,42148 2dc1A 236 3.252 3ceaA 346 3.393 2aefA 234 3.558 2q4eA 362 3.850 2g1uA 155 3.881 3c85A 183 4.735 1ez4A 318 4.848 c.2.1.5,d.162.1.1 64917,64918 3c1aA 315 4.945 2vojA 371 5.023 1ofgA 381 5.087 c.2.1.3,d.81.1.5 30064,39979 1luaA 287 5.177 c.2.1.7,c.58.1.4 78216,78217 2gptA 523 5.306 1iukA 140 5.578 c.2.1.8 83712 2p2sA 336 5.655 2o7sA 523 5.756 1h6dA 433 6.283 c.2.1.3,d.81.1.5 65656,65657 2o4uX 334 6.354 1vi2A 300 6.621 c.2.1.7,c.58.1.5 100726,100727 1a4iA 301 6.693 c.2.1.7,c.58.1.2 30278,33926 1hdoA 206 6.731 c.2.1.2 60965 1lehA 364 7.344 c.2.1.7,c.58.1.1 30268,33916 2csuA 457 7.398 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1j5pA 253 7.464 d.81.1.3,c.2.1.3 71577,83092 1vknA 351 7.537 c.2.1.3,d.81.1.1 108676,108677 1y81A 138 7.627 c.2.1.8 122731 1dxyA 333 7.894 c.2.1.4,c.23.12.1 30094,31354 1zh8A 340 7.956 c.2.1.3,d.81.1.5 125077,125078 1nvmB 312 9.383 c.2.1.3,d.81.1.1 86251,86252 1rydA 387 10.39 c.2.1.3,d.81.1.5 118801,118802 2czcA 334 10.96 d.81.1.1 131044 2ph5A 480 11.05 1lc0A 294 13.57 c.2.1.3,d.81.1.4 73823,73824 1l7dA 384 14.15 c.2.1.4,c.23.12.2 77774,77775 1scuA 288 14.25 c.2.1.8,c.23.4.1 30307,31135 1id1A 153 14.57 c.2.1.9 62286 1n7hA 381 15.11 c.2.1.2 80250 1bxkA 355 15.60 c.2.1.2 29803 2r6jA 318 16.24 1l1eA 287 16.57 c.66.1.18 73454 1drwA 273 16.91 c.2.1.3,d.81.1.3 30057,39972 1b0aA 288 17.10 c.2.1.7,c.58.1.2 30286,33934 2g17A 337 17.73 c.2.1.3,d.81.1.1 134512,134513 1drw 273 17.93 2nqtA 352 18.66 1orrA 347 18.82 c.2.1.2 93460 1xhlA 297 19.20 c.2.1.2 109591 1k2wA 256 19.62 c.2.1.2 90927 2hjsA 340 19.71 c.2.1.3,d.81.1.1 136547,136548 2cmdA 312 20.06 c.2.1.5,d.162.1.1 30135,42102 1jw9B 249 20.18 c.111.1.1 67377 1k6xA 352 20.47 c.2.1.2 68238 1hxhA 253 20.59 c.2.1.2 76725 1q7bA 244 20.65 c.2.1.2 96026 2v3aA 384 22.11 2ixaA 444 22.53 1nffA 260 23.58 c.2.1.2 80457 2exxA 306 23.76 1pl8A 356 25.54 b.35.1.2,c.2.1.1 94878,94879 2gz1A 366 26.55 c.2.1.3,d.81.1.1 135887,135888 1hdcA 253 26.74 c.2.1.2 29862 2z1nA 260 26.79 1xseA 295 27.00 c.2.1.2 115925 2b5wA 357 27.63 1ydeA 270 28.03 c.2.1.2 122980 1e6wA 260 28.49 c.2.1.2 59326 1qydA 313 29.04 c.2.1.2 96583 1xkqA 280 29.79 c.2.1.2 115417 1zud1 251 31.80 1xu9A 286 32.14 c.2.1.2 116052 2yx0A 342 32.14 1yxmA 303 32.25 c.2.1.2 124192 1rkxA 357 32.48 c.2.1.2 97631 2o23A 265 32.56 c.2.1.2 138884 1xq6A 253 33.02 c.2.1.2 115829 1zmtA 254 33.82 c.2.1.2 125363 2a9fA 398 34.28 1gegA 256 35.02 c.2.1.2 29888 1uufA 369 36.37 b.35.1.2,c.2.1.1 100006,100007 1fmcA 255 36.85 c.2.1.2 29856 2eklA 313 36.93 2ozpA 345 36.99 2gdzA 267 36.99 c.2.1.2 135043 2q49A 359 37.06 c.2.1.3,d.81.1.1 139831,139832 1t2aA 375 37.62 c.2.1.2 99078 1w6uA 302 38.23 c.2.1.2 114288 2h6eA 344 38.25 2c5aA 379 38.37 c.2.1.2 129894 2cdcA 366 38.52 1sb8A 352 38.96 c.2.1.2 105410 2a4kA 263 39.20 c.2.1.2 126156 2gqwA 408 39.69 1x13A 401 40.26 2pd6A 264 40.30 1yb1A 272 40.44 c.2.1.2 116599 2gasA 307 40.52 1pwxA 254 41.44 c.2.1.2 95262 2ag5A 246 42.50 c.2.1.2 126719 2bryA 497 43.01 1ja9A 274 44.17 c.2.1.2 62817 1e3jA 352 44.41 b.35.1.2,c.2.1.1 24765,29781 1oi7A 288 44.64 c.2.1.8,c.23.4.1 87049,87050 1zmdA 474 44.64 1db3A 372 46.07 c.2.1.2 29813 2q46A 253 47.56 c.2.1.2 139825 1vj0A 380 48.02 b.35.1.2,c.2.1.1 100786,100787 1eyzA 392 48.49 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 3bioA 304 48.81 1y5mA 276 48.98 c.2.1.2 122645 2r00A 336 49.28 3c8mA 331 49.44 1x7gA 261 50.09 c.2.1.2 114929 1vl8A 267 50.33 c.2.1.2 108733 1bdbA 277 50.34 c.2.1.2 29874 1e7wA 291 52.29 c.2.1.2 59373 2r0cA 549 52.42 1i2cA 404 52.97 c.2.1.2 83666 1cf2O 337 53.89 c.2.1.3,d.81.1.1 29994,39909 1qycA 308 55.37 c.2.1.2 96581 1kewA 361 55.39 c.2.1.2 68544 1spxA 278 55.41 c.2.1.2 98958 1zk4A 251 55.82 c.2.1.2 125176 1kjqA 391 58.84 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 3grs 478 59.61 1nhpA 447 60.22 c.3.1.5,c.3.1.5,d.87.1.1 30549,30550,40196 2ph3A 245 60.23 2jahA 247 60.57 2dt5A 211 60.97 a.4.5.38,c.2.1.12 131708,131709 1cydA 244 63.16 c.2.1.2 29825 1fl2A 310 63.69 c.3.1.5,c.3.1.5 59869,59870 1l9cA 389 66.06 c.3.1.2,d.16.1.3 77815,77816 2qa1A 500 67.20 1aj2A 282 67.44 c.1.21.1 29665 1yqzA 438 69.62 2nwqA 272 70.15 1o6zA 303 71.67 c.2.1.5,d.162.1.1 81107,81108 2p4hX 322 71.80 2d8aA 348 72.89 1b16A 254 73.46 c.2.1.2 29875 1iy8A 267 73.57 c.2.1.2 83774 2cduA 452 74.14 2c07A 285 75.36 c.2.1.2 129577 2pn1A 331 75.60 2cf5A 357 77.34 1hyuA 521 78.63 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 2dwcA 433 78.69 2bzgA 232 78.96 c.66.1.36 129559 1q1rA 431 79.47 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 1dv2A 452 80.46 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 2blnA 305 81.10 b.46.1.1,c.65.1.1 128734,128735 1xcbA 211 81.35 a.4.5.38,c.2.1.12 109552,109553 3bofA 566 81.80 1in4A 334 83.28 a.4.5.11,c.37.1.20 62597,62598 2ae2A 260 84.26 c.2.1.2 29945 1pvvA 315 84.28 c.78.1.1,c.78.1.1 95190,95191 1n8kA 374 84.37 b.35.1.2,c.2.1.1 80298,80299 2pnfA 248 85.56 1l3iA 192 86.09 c.66.1.22 77676 1cs1A 386 86.38 c.67.1.3 34399 2z1mA 345 86.57 1h5qA 265 86.98 c.2.1.2 60643 1nhsA 447 87.07 c.3.1.5,c.3.1.5,d.87.1.1 30555,30556,40199 2cfcA 250 87.38 2rbkA 261 87.98 2jhfA 374 87.98 b.35.1.2,c.2.1.1 138314,138315 1xhcA 367 88.43 c.3.1.5,c.3.1.5,d.87.1.1 115292,115293,115294 2dvmA 439 88.61 1zemA 262 88.70 c.2.1.2 124984