# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 8.88e-09 2h78A 302 1.25e-08 2i76A 276 3.31e-08 1vpdA 299 4.48e-08 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 8.21e-08 a.100.1.10,c.2.1.6 126775,126776 2rcyA 262 8.28e-08 2izzA 322 1.13e-07 2f1kA 279 1.59e-07 a.100.1.12,c.2.1.6 132772,132773 2pgdA 482 1.84e-07 a.100.1.1,c.2.1.6 18778,30190 2graA 277 2.44e-07 1yqgA 263 2.75e-07 2p4qA 497 2.88e-07 2cvzA 289 5.08e-07 a.100.1.1,c.2.1.6 130890,130891 2pv7A 298 5.41e-07 2g5cA 281 6.05e-07 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 1.57e-06 a.100.1.2,c.2.1.6 85946,85947 2pgd 482 2.65e-06 1pgjA 478 3.10e-06 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 6.60e-06 1i36A 264 1.61e-05 a.100.1.8,c.2.1.6 71108,71109 1ks9A 291 1.69e-05 a.100.1.7,c.2.1.6 68857,68858 1bg6 359 2.08e-05 1yrlA 491 4.72e-05 1txgA 335 5.32e-05 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 5.70e-05 a.100.1.2,c.2.1.6 18785,30182 1evyA 366 8.58e-05 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 8.94e-05 1zejA 293 0.000156 2o3jA 481 0.000306 1f0yA 302 0.000334 a.100.1.3,c.2.1.6 18793,30197 1mv8A 436 0.000478 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dliA 402 0.000644 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 0.000814 1dljA 402 0.001021 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.002197 1jayA 212 0.002813 c.2.1.6 66478 1ff9A 450 0.02539 c.2.1.3,d.81.1.2 30039,39954 2dpoA 319 0.03291 1bg6A 359 0.03325 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.04585 2nacA 393 0.1546 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 0.2130 c.2.1.4,c.23.12.1 30095,31355 2b0jA 358 0.2295 a.100.1.11,c.2.1.6 127639,127640 2qytA 317 0.2869 1tltA 319 0.3126 c.2.1.3,d.81.1.5 107135,107136 1u8xX 472 0.4129 c.2.1.5,d.162.1.2 107741,107742 2fssA 365 0.4180 1t2dA 322 0.4531 c.2.1.5,d.162.1.1 99084,99085 1mx3A 347 0.4607 c.2.1.4,c.23.12.1 79638,79639 1j4aA 333 0.6428 c.2.1.4,c.23.12.1 71502,71503 1up6A 416 0.6731 c.2.1.5,d.162.1.2 107976,107977 2j6iA 364 0.6780 1ldg 316 0.6865 1uxjA 309 0.6933 c.2.1.5,d.162.1.1 108112,108113 1wwkA 307 0.7030 1ur5A 309 0.7153 c.2.1.5,d.162.1.1 99807,99808 1omoA 322 0.8111 c.2.1.13 104017 1psdA 409 0.8279 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1xwfA 431 0.8306 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 0.8370 c.2.1.4,c.23.12.3 30110,31370 2g76A 335 0.8479 1lldA 319 0.8509 c.2.1.5,d.162.1.1 30177,42144 1xdwA 331 0.8765 1vllA 334 0.9458 c.2.1.13 108834 2hk9A 275 1.037 1li4A 432 1.051 c.2.1.4,c.23.12.3 84616,84617 1dxy 333 1.091 1lssA 140 1.197 c.2.1.9 74246 1pzgA 331 1.230 c.2.1.5,d.162.1.1 95425,95426 1x7dA 350 1.328 c.2.1.13 114927 1gpjA 404 1.402 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2o4cA 380 1.481 2d0iA 333 1.763 2dbqA 334 1.985 1sc6A 404 2.007 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1qv9A 283 2.064 c.127.1.1 96356 1v8bA 479 2.111 c.2.1.4,c.23.12.3 113564,113565 1xeaA 323 2.256 c.2.1.3,d.81.1.5 109572,109573 1up7A 417 2.687 c.2.1.5,d.162.1.2 113374,113375 1f06A 320 2.692 c.2.1.3,d.81.1.3 59556,59557 1ygyA 529 3.435 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1obbA 480 3.747 c.2.1.5,d.162.1.2 86760,86761 1hyhA 309 3.827 c.2.1.5,d.162.1.1 30150,42117 2nvwA 479 3.877 c.2.1.3,d.81.1.5 138665,138666 2d5cA 263 3.990 1guzA 310 4.062 c.2.1.5,d.162.1.1 65586,65587 1vjtA 483 4.113 c.2.1.5,d.162.1.2 100833,100834 2pi1A 334 4.466 6ldhA 329 4.534 c.2.1.5,d.162.1.1 30161,42128 2gcgA 330 4.677 2eggA 297 4.860 2nloA 302 4.935 2i6tA 303 5.142 2ewdA 317 5.345 1nytA 271 5.376 c.2.1.7,c.58.1.5 86417,86418 1nvtA 287 5.922 c.2.1.7,c.58.1.5 86270,86271 1gcuA 295 6.205 c.2.1.3,d.81.1.4 30063,39978 1lehA 364 6.439 c.2.1.7,c.58.1.1 30268,33916 1a5zA 319 6.586 c.2.1.5,d.162.1.1 30181,42148 1pjcA 361 6.607 c.2.1.4,c.23.12.2 30101,31361 1s6yA 450 6.735 c.2.1.5,d.162.1.2 105314,105315 2hmvA 144 7.568 c.2.1.9 136615 1p77A 272 7.768 c.2.1.7,c.58.1.5 94214,94215 2vhxA 377 8.643 1npyA 271 8.850 c.2.1.7,c.58.1.5 85995,85996 2cukA 311 9.026 2v7pA 310 9.245 2axqA 467 9.756 1qp8A 303 9.822 c.2.1.4,c.23.12.1 30092,31352 1lsuA 147 9.850 c.2.1.9 74250 2g1uA 155 9.906 1j5pA 253 10.00 d.81.1.3,c.2.1.3 71577,83092 1dxyA 333 10.78 c.2.1.4,c.23.12.1 30094,31354 2eklA 313 11.24 2d59A 144 12.27 c.2.1.8 131266 1vknA 351 13.62 c.2.1.3,d.81.1.1 108676,108677 3c85A 183 14.17 2gptA 523 14.19 1iukA 140 14.44 c.2.1.8 83712 2ho3A 325 14.99 1hdoA 206 15.64 c.2.1.2 60965 2vojA 371 16.10 2dc1A 236 16.98 2glxA 332 17.18 1ez4A 318 18.95 c.2.1.5,d.162.1.1 64917,64918 2csuA 457 19.13 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1drw 273 19.45 1c1dA 355 19.71 c.2.1.7,c.58.1.1 30270,33918 1luaA 287 21.69 c.2.1.7,c.58.1.4 78216,78217 1ofgA 381 21.70 c.2.1.3,d.81.1.5 30064,39979 1h6dA 433 21.83 c.2.1.3,d.81.1.5 65656,65657 2o7sA 523 21.97 2aefA 234 22.24 2czcA 334 22.33 d.81.1.1 131044 2cmdA 312 22.48 c.2.1.5,d.162.1.1 30135,42102 1nvmB 312 23.10 c.2.1.3,d.81.1.1 86251,86252 2nqtA 352 23.51 1scuA 288 24.63 c.2.1.8,c.23.4.1 30307,31135 2q4eA 362 27.32 1a4iA 301 28.41 c.2.1.7,c.58.1.2 30278,33926 3c1aA 315 28.73 1lc0A 294 29.11 c.2.1.3,d.81.1.4 73823,73824 2gz1A 366 29.55 c.2.1.3,d.81.1.1 135887,135888 2hjsA 340 29.86 c.2.1.3,d.81.1.1 136547,136548 1drwA 273 30.03 c.2.1.3,d.81.1.3 30057,39972 2g17A 337 32.01 c.2.1.3,d.81.1.1 134512,134513 2ph5A 480 32.20 2p2sA 336 35.21 2ozpA 345 36.55 1k2wA 256 37.71 c.2.1.2 90927 1vi2A 300 40.92 c.2.1.7,c.58.1.5 100726,100727 1zud1 251 42.16 3ceaA 346 44.73 1xq6A 253 44.98 c.2.1.2 115829 1l7dA 384 45.12 c.2.1.4,c.23.12.2 77774,77775 1y81A 138 47.38 c.2.1.8 122731 2exxA 306 49.08 1rydA 387 50.04 c.2.1.3,d.81.1.5 118801,118802 1x7gA 261 51.55 c.2.1.2 114929 1xhlA 297 51.79 c.2.1.2 109591 1qydA 313 55.29 c.2.1.2 96583 1jw9B 249 58.70 c.111.1.1 67377 1gegA 256 60.75 c.2.1.2 29888 1spxA 278 62.37 c.2.1.2 98958 1xkqA 280 62.94 c.2.1.2 115417 2ag5A 246 64.69 c.2.1.2 126719 1yb1A 272 65.23 c.2.1.2 116599 1xseA 295 65.38 c.2.1.2 115925 1ydeA 270 67.92 c.2.1.2 122980 2q49A 359 68.98 c.2.1.3,d.81.1.1 139831,139832 2z1nA 260 68.99 1rkxA 357 69.64 c.2.1.2 97631 1yxmA 303 70.88 c.2.1.2 124192 2v3aA 384 72.80 2bryA 497 73.90 1qycA 308 77.77 c.2.1.2 96581 1xu9A 286 79.72 c.2.1.2 116052 1vl8A 267 81.83 c.2.1.2 108733 1fmcA 255 81.99 c.2.1.2 29856 1pwxA 254 83.62 c.2.1.2 95262 2o23A 265 84.39 c.2.1.2 138884 1e7wA 291 85.40 c.2.1.2 59373 1bxkA 355 87.30 c.2.1.2 29803 1ja9A 274 87.40 c.2.1.2 62817 1w6uA 302 88.13 c.2.1.2 114288 1l1eA 287 88.64 c.66.1.18 73454