# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 3.19e-12 2h78A 302 5.13e-12 1vpdA 299 2.01e-11 a.100.1.1,c.2.1.6 113951,113952 2i76A 276 2.53e-11 2rcyA 262 4.21e-11 2ahrA 259 4.78e-11 a.100.1.10,c.2.1.6 126775,126776 2izzA 322 9.34e-11 2pgdA 482 1.39e-10 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 1.63e-10 a.100.1.12,c.2.1.6 132772,132773 2graA 277 3.27e-10 2p4qA 497 3.38e-10 1yqgA 263 3.62e-10 2cvzA 289 5.49e-10 a.100.1.1,c.2.1.6 130890,130891 2g5cA 281 1.07e-09 a.100.1.12,c.2.1.6 134646,134647 2pv7A 298 1.40e-09 1np3A 338 3.36e-09 a.100.1.2,c.2.1.6 85946,85947 2pgd 482 4.09e-09 1pgjA 478 6.25e-09 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 3.29e-08 1i36A 264 8.20e-08 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 8.98e-08 1ks9A 291 9.35e-08 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 2.22e-07 1txgA 335 3.35e-07 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 4.72e-07 a.100.1.2,c.2.1.6 18785,30182 1evyA 366 8.76e-07 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 1.12e-06 1zejA 293 1.66e-06 2o3jA 481 2.29e-06 1mv8A 436 5.79e-06 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1dljA 402 6.39e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1f0yA 302 7.91e-06 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 1.22e-05 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 3.11e-05 1jayA 212 8.43e-05 c.2.1.6 66478 1zcjA 463 0.000101 1bg6A 359 0.000616 a.100.1.5,c.2.1.6 18810,30214 1ff9A 450 0.001742 c.2.1.3,d.81.1.2 30039,39954 2dpoA 319 0.003012 1x0vA 354 0.004425 1gdhA 320 0.01054 c.2.1.4,c.23.12.1 30095,31355 2nacA 393 0.01159 c.2.1.4,c.23.12.1 30088,31348 2qytA 317 0.02770 2fssA 365 0.03943 1mx3A 347 0.04438 c.2.1.4,c.23.12.1 79638,79639 2b0jA 358 0.04624 a.100.1.11,c.2.1.6 127639,127640 1tltA 319 0.04792 c.2.1.3,d.81.1.5 107135,107136 1wwkA 307 0.05404 1u8xX 472 0.06053 c.2.1.5,d.162.1.2 107741,107742 2j6iA 364 0.06931 1t2dA 322 0.08502 c.2.1.5,d.162.1.1 99084,99085 1j4aA 333 0.08863 c.2.1.4,c.23.12.1 71502,71503 1xwfA 431 0.0997 c.2.1.4,c.23.12.3 122392,122393 2hk9A 275 0.1055 2g76A 335 0.1169 1d4fA 431 0.1220 c.2.1.4,c.23.12.3 30110,31370 1uxjA 309 0.1240 c.2.1.5,d.162.1.1 108112,108113 1psdA 409 0.1363 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1vllA 334 0.1367 c.2.1.13 108834 1xdwA 331 0.1451 1ldg 316 0.1469 1li4A 432 0.1501 c.2.1.4,c.23.12.3 84616,84617 1lldA 319 0.1561 c.2.1.5,d.162.1.1 30177,42144 1ur5A 309 0.1574 c.2.1.5,d.162.1.1 99807,99808 1omoA 322 0.1723 c.2.1.13 104017 1lssA 140 0.1790 c.2.1.9 74246 1dxy 333 0.1799 1x7dA 350 0.1928 c.2.1.13 114927 1gpjA 404 0.1977 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2dbqA 334 0.2073 1xeaA 323 0.2155 c.2.1.3,d.81.1.5 109572,109573 1pzgA 331 0.2156 c.2.1.5,d.162.1.1 95425,95426 2d0iA 333 0.2425 1up6A 416 0.2501 c.2.1.5,d.162.1.2 107976,107977 1v8bA 479 0.2746 c.2.1.4,c.23.12.3 113564,113565 1sc6A 404 0.3098 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2o4cA 380 0.4300 2nvwA 479 0.6625 c.2.1.3,d.81.1.5 138665,138666 1guzA 310 0.7622 c.2.1.5,d.162.1.1 65586,65587 1qv9A 283 0.7855 c.127.1.1 96356 1qp8A 303 0.7868 c.2.1.4,c.23.12.1 30092,31352 2pi1A 334 0.7900 2gcgA 330 0.8059 1ygyA 529 0.8173 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2vhxA 377 0.8199 1f06A 320 0.8240 c.2.1.3,d.81.1.3 59556,59557 1nytA 271 0.8301 c.2.1.7,c.58.1.5 86417,86418 2d5cA 263 0.8516 1up7A 417 0.8644 c.2.1.5,d.162.1.2 113374,113375 1obbA 480 0.9148 c.2.1.5,d.162.1.2 86760,86761 1hyhA 309 0.9646 c.2.1.5,d.162.1.1 30150,42117 2ewdA 317 0.997 2axqA 467 1.216 6ldhA 329 1.257 c.2.1.5,d.162.1.1 30161,42128 1vjtA 483 1.314 c.2.1.5,d.162.1.2 100833,100834 1s6yA 450 1.320 c.2.1.5,d.162.1.2 105314,105315 2nloA 302 1.520 2hmvA 144 1.642 c.2.1.9 136615 1c1dA 355 1.646 c.2.1.7,c.58.1.1 30270,33918 1lehA 364 1.687 c.2.1.7,c.58.1.1 30268,33916 2i6tA 303 1.701 2eggA 297 1.799 1gcuA 295 1.811 c.2.1.3,d.81.1.4 30063,39978 1pjcA 361 1.917 c.2.1.4,c.23.12.2 30101,31361 2eklA 313 1.941 2vojA 371 1.948 2cukA 311 1.985 1p77A 272 2.108 c.2.1.7,c.58.1.5 94214,94215 1nvtA 287 2.140 c.2.1.7,c.58.1.5 86270,86271 1lsuA 147 2.147 c.2.1.9 74250 2g1uA 155 2.150 2d59A 144 2.157 c.2.1.8 131266 1npyA 271 2.273 c.2.1.7,c.58.1.5 85995,85996 2aefA 234 2.541 1dxyA 333 2.661 c.2.1.4,c.23.12.1 30094,31354 2glxA 332 2.831 3c85A 183 3.050 2ho3A 325 3.146 1a5zA 319 3.246 c.2.1.5,d.162.1.1 30181,42148 2gptA 523 3.501 2v7pA 310 3.611 2dc1A 236 4.067 1iukA 140 4.527 c.2.1.8 83712 1a4iA 301 5.039 c.2.1.7,c.58.1.2 30278,33926 2o7sA 523 5.488 1j5pA 253 5.677 d.81.1.3,c.2.1.3 71577,83092 2q4eA 362 5.932 1ez4A 318 6.017 c.2.1.5,d.162.1.1 64917,64918 1ofgA 381 6.327 c.2.1.3,d.81.1.5 30064,39979 1y81A 138 6.717 c.2.1.8 122731 1vknA 351 6.735 c.2.1.3,d.81.1.1 108676,108677 1h6dA 433 7.208 c.2.1.3,d.81.1.5 65656,65657 2ph5A 480 7.480 2csuA 457 7.690 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2p2sA 336 7.717 1hdoA 206 7.720 c.2.1.2 60965 3c1aA 315 7.930 3ceaA 346 8.015 1scuA 288 9.095 c.2.1.8,c.23.4.1 30307,31135 1luaA 287 9.198 c.2.1.7,c.58.1.4 78216,78217 2cmdA 312 9.912 c.2.1.5,d.162.1.1 30135,42102 1nvmB 312 10.45 c.2.1.3,d.81.1.1 86251,86252 1lc0A 294 11.15 c.2.1.3,d.81.1.4 73823,73824 1drw 273 11.37 1rydA 387 11.55 c.2.1.3,d.81.1.5 118801,118802 1l7dA 384 11.85 c.2.1.4,c.23.12.2 77774,77775 2czcA 334 11.87 d.81.1.1 131044 1vi2A 300 15.30 c.2.1.7,c.58.1.5 100726,100727 1drwA 273 15.89 c.2.1.3,d.81.1.3 30057,39972 2z1nA 260 16.49 1qydA 313 17.47 c.2.1.2 96583 1b0aA 288 18.46 c.2.1.7,c.58.1.2 30286,33934 1k2wA 256 18.72 c.2.1.2 90927 1zud1 251 19.33 2v3aA 384 20.53 2g17A 337 20.86 c.2.1.3,d.81.1.1 134512,134513 2exxA 306 20.99 2nqtA 352 21.46 1xhlA 297 23.02 c.2.1.2 109591 2hjsA 340 23.50 c.2.1.3,d.81.1.1 136547,136548 1k6xA 352 24.96 c.2.1.2 68238 2q49A 359 26.20 c.2.1.3,d.81.1.1 139831,139832 1xcbA 211 26.33 a.4.5.38,c.2.1.12 109552,109553 2o4uX 334 27.40 1jw9B 249 27.82 c.111.1.1 67377 1zh8A 340 28.79 c.2.1.3,d.81.1.5 125077,125078 1xq6A 253 29.41 c.2.1.2 115829 1gegA 256 29.50 c.2.1.2 29888 2bryA 497 30.08 2pd6A 264 30.27 2ixaA 444 30.58 2ozpA 345 30.86 1pwxA 254 31.09 c.2.1.2 95262 1pjqA 457 31.13 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1xseA 295 32.02 c.2.1.2 115925 2r6jA 318 32.49 1ydeA 270 32.95 c.2.1.2 122980 1uufA 369 33.23 b.35.1.2,c.2.1.1 100006,100007 2a4kA 263 33.63 c.2.1.2 126156 1yb1A 272 34.34 c.2.1.2 116599 2dt5A 211 34.66 a.4.5.38,c.2.1.12 131708,131709 1hxhA 253 34.79 c.2.1.2 76725 1x7gA 261 35.17 c.2.1.2 114929 1n7hA 381 35.30 c.2.1.2 80250 1q7bA 244 36.10 c.2.1.2 96026 1l1eA 287 36.30 c.66.1.18 73454 2gasA 307 36.86 1rkxA 357 37.10 c.2.1.2 97631 1fmcA 255 37.12 c.2.1.2 29856 2gz1A 366 37.21 c.2.1.3,d.81.1.1 135887,135888 1xkqA 280 37.39 c.2.1.2 115417 1zk4A 251 37.60 c.2.1.2 125176 1nffA 260 38.83 c.2.1.2 80457 1zmtA 254 39.39 c.2.1.2 125363 1w6uA 302 39.47 c.2.1.2 114288 1x13A 401 41.87 5nul 138 43.08 1yxmA 303 43.18 c.2.1.2 124192 2ag5A 246 44.32 c.2.1.2 126719 2bzgA 232 44.72 c.66.1.36 129559 2o23A 265 45.31 c.2.1.2 138884 1qycA 308 45.41 c.2.1.2 96581 2c5aA 379 45.93 c.2.1.2 129894 1spxA 278 46.36 c.2.1.2 98958 2fdxA 138 48.31 c.23.5.1 31192 1e7wA 291 48.41 c.2.1.2 59373 1ja9A 274 48.53 c.2.1.2 62817 1hdcA 253 48.85 c.2.1.2 29862 2qa1A 500 49.38 2jahA 247 49.38 2yx0A 342 49.65 2gdzA 267 51.50 c.2.1.2 135043 1pl8A 356 51.78 b.35.1.2,c.2.1.1 94878,94879 1kewA 361 52.29 c.2.1.2 68544 1vl8A 267 52.98 c.2.1.2 108733 2r00A 336 53.61 1cydA 244 53.61 c.2.1.2 29825 2pnfA 248 56.92 1cf2O 337 57.28 c.2.1.3,d.81.1.1 29994,39909 1xu9A 286 58.01 c.2.1.2 116052 1h5qA 265 58.06 c.2.1.2 60643 2bgkA 278 58.44 c.2.1.2 128480 1bxkA 355 60.12 c.2.1.2 29803 1t2aA 375 60.88 c.2.1.2 99078 1zmdA 474 61.71 1b16A 254 61.87 c.2.1.2 29875 2ekpA 239 62.03 1y1pA 342 62.28 c.2.1.2 122550 1i2cA 404 64.04 c.2.1.2 83666 2gqwA 408 64.10 1orrA 347 64.67 c.2.1.2 93460 1e3jA 352 66.29 b.35.1.2,c.2.1.1 24765,29781 2cduA 452 66.91 2r0cA 549 67.62 2b5wA 357 67.69 3bioA 304 68.36 1e6uA 321 69.54 c.2.1.2 29805 2cf5A 357 70.24 1gtmA 419 70.58 c.2.1.7,c.58.1.1 30223,33871 1xg5A 279 70.93 c.2.1.2 115277 1eyzA 392 70.96 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1l9cA 389 72.42 c.3.1.2,d.16.1.3 77815,77816 2hsjA 214 73.19 1pbeA 394 74.39 c.3.1.2,d.16.1.2 30338,37869 1bdbA 277 74.68 c.2.1.2 29874 1fl2A 310 75.28 c.3.1.5,c.3.1.5 59869,59870 2ph3A 245 75.47 2q46A 253 75.67 c.2.1.2 139825 1xgkA 352 76.04 c.2.1.2 115286 2gf3A 389 78.31 c.3.1.2,d.16.1.3 135070,135071 1e6wA 260 79.55 c.2.1.2 59326 1yqzA 438 81.06 1kjqA 391 82.86 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1zk7A 467 84.80 3ladA 476 86.00 c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1b6rA 355 87.39 b.84.2.1,c.30.1.1,d.142.1.2 28241,31648,41493 2c29D 337 87.68 1dv2A 452 87.75 b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1nhp 447 88.66 2nwqA 272 89.03 1y56B 382 89.57 2cdcA 366 89.97