# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 8.46e-13 2h78A 302 1.42e-12 2i76A 276 6.41e-12 1vpdA 299 7.27e-12 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 1.20e-11 a.100.1.10,c.2.1.6 126775,126776 2rcyA 262 1.35e-11 2izzA 322 2.99e-11 2pgdA 482 5.82e-11 a.100.1.1,c.2.1.6 18778,30190 2f1kA 279 5.90e-11 a.100.1.12,c.2.1.6 132772,132773 2graA 277 8.49e-11 1yqgA 263 1.10e-10 2p4qA 497 1.17e-10 2cvzA 289 1.67e-10 a.100.1.1,c.2.1.6 130890,130891 2pv7A 298 3.29e-10 2g5cA 281 4.67e-10 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 1.30e-09 a.100.1.2,c.2.1.6 85946,85947 2pgd 482 1.69e-09 1pgjA 478 3.87e-09 a.100.1.1,c.2.1.6 18783,30195 3c24A 286 1.12e-08 1i36A 264 2.98e-08 a.100.1.8,c.2.1.6 71108,71109 1bg6 359 5.62e-08 1ks9A 291 6.00e-08 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 1.03e-07 1txgA 335 1.18e-07 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 1.82e-07 a.100.1.2,c.2.1.6 18785,30182 2ew2A 316 4.36e-07 1evyA 366 4.96e-07 a.100.1.6,c.2.1.6 18811,30215 1zejA 293 6.26e-07 2o3jA 481 1.21e-06 1dljA 402 2.31e-06 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1mv8A 436 2.99e-06 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1f0yA 302 3.17e-06 a.100.1.3,c.2.1.6 18793,30197 1dliA 402 5.23e-06 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1z82A 335 1.06e-05 1zcjA 463 3.94e-05 1jayA 212 4.76e-05 c.2.1.6 66478 1bg6A 359 0.000643 a.100.1.5,c.2.1.6 18810,30214 1ff9A 450 0.001278 c.2.1.3,d.81.1.2 30039,39954 2dpoA 319 0.001695 1x0vA 354 0.002895 2nacA 393 0.006233 c.2.1.4,c.23.12.1 30088,31348 1gdhA 320 0.006864 c.2.1.4,c.23.12.1 30095,31355 1mx3A 347 0.01878 c.2.1.4,c.23.12.1 79638,79639 1tltA 319 0.01923 c.2.1.3,d.81.1.5 107135,107136 2qytA 317 0.02055 2b0jA 358 0.02416 a.100.1.11,c.2.1.6 127639,127640 1u8xX 472 0.02429 c.2.1.5,d.162.1.2 107741,107742 2fssA 365 0.02638 1wwkA 307 0.03439 1t2dA 322 0.04233 c.2.1.5,d.162.1.1 99084,99085 2hk9A 275 0.04242 2j6iA 364 0.04580 1j4aA 333 0.04614 c.2.1.4,c.23.12.1 71502,71503 1ldg 316 0.05069 1xwfA 431 0.05860 c.2.1.4,c.23.12.3 122392,122393 1d4fA 431 0.05902 c.2.1.4,c.23.12.3 30110,31370 2g76A 335 0.06123 1xdwA 331 0.06631 1psdA 409 0.06665 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1vllA 334 0.06672 c.2.1.13 108834 1lldA 319 0.06927 c.2.1.5,d.162.1.1 30177,42144 1gpjA 404 0.07087 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1lssA 140 0.07365 c.2.1.9 74246 1omoA 322 0.08219 c.2.1.13 104017 1up6A 416 0.08588 c.2.1.5,d.162.1.2 107976,107977 1uxjA 309 0.08880 c.2.1.5,d.162.1.1 108112,108113 1li4A 432 0.09025 c.2.1.4,c.23.12.3 84616,84617 1sc6A 404 0.09252 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1dxy 333 0.1099 1ur5A 309 0.1119 c.2.1.5,d.162.1.1 99807,99808 1pzgA 331 0.1286 c.2.1.5,d.162.1.1 95425,95426 1x7dA 350 0.1296 c.2.1.13 114927 2dbqA 334 0.1411 2d0iA 333 0.1419 1xeaA 323 0.1607 c.2.1.3,d.81.1.5 109572,109573 1v8bA 479 0.1772 c.2.1.4,c.23.12.3 113564,113565 2o4cA 380 0.2314 1up7A 417 0.2782 c.2.1.5,d.162.1.2 113374,113375 1ygyA 529 0.3770 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2ewdA 317 0.3987 2pi1A 334 0.4180 1nytA 271 0.4252 c.2.1.7,c.58.1.5 86417,86418 1obbA 480 0.5569 c.2.1.5,d.162.1.2 86760,86761 1vjtA 483 0.5786 c.2.1.5,d.162.1.2 100833,100834 1qp8A 303 0.6124 c.2.1.4,c.23.12.1 30092,31352 2vhxA 377 0.6440 2nvwA 479 0.6462 c.2.1.3,d.81.1.5 138665,138666 1hyhA 309 0.6607 c.2.1.5,d.162.1.1 30150,42117 2d5cA 263 0.6974 2eggA 297 0.7016 2gcgA 330 0.7095 2nloA 302 0.7185 1f06A 320 0.7336 c.2.1.3,d.81.1.3 59556,59557 1dxyA 333 0.7993 c.2.1.4,c.23.12.1 30094,31354 2eklA 313 0.8432 2cukA 311 0.9122 1qv9A 283 0.9286 c.127.1.1 96356 6ldhA 329 0.9315 c.2.1.5,d.162.1.1 30161,42128 1guzA 310 1.082 c.2.1.5,d.162.1.1 65586,65587 1lehA 364 1.100 c.2.1.7,c.58.1.1 30268,33916 2axqA 467 1.195 2d59A 144 1.270 c.2.1.8 131266 1nvtA 287 1.290 c.2.1.7,c.58.1.5 86270,86271 2i6tA 303 1.292 1lsuA 147 1.408 c.2.1.9 74250 2hmvA 144 1.419 c.2.1.9 136615 1pjcA 361 1.422 c.2.1.4,c.23.12.2 30101,31361 1c1dA 355 1.551 c.2.1.7,c.58.1.1 30270,33918 1a5zA 319 1.585 c.2.1.5,d.162.1.1 30181,42148 1iukA 140 1.598 c.2.1.8 83712 1p77A 272 1.789 c.2.1.7,c.58.1.5 94214,94215 2g1uA 155 1.927 1gcuA 295 1.928 c.2.1.3,d.81.1.4 30063,39978 2vojA 371 1.965 2v7pA 310 2.002 3c85A 183 2.052 2aefA 234 2.198 1s6yA 450 2.714 c.2.1.5,d.162.1.2 105314,105315 2glxA 332 2.786 1npyA 271 2.904 c.2.1.7,c.58.1.5 85995,85996 2ho3A 325 2.908 2gptA 523 3.019 1j5pA 253 3.533 d.81.1.3,c.2.1.3 71577,83092 1a4iA 301 3.860 c.2.1.7,c.58.1.2 30278,33926 1ez4A 318 4.195 c.2.1.5,d.162.1.1 64917,64918 1ofgA 381 4.254 c.2.1.3,d.81.1.5 30064,39979 2dc1A 236 4.639 1y81A 138 5.035 c.2.1.8 122731 2csuA 457 5.063 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2o7sA 523 5.726 1h6dA 433 5.782 c.2.1.3,d.81.1.5 65656,65657 2p2sA 336 5.782 1vknA 351 5.918 c.2.1.3,d.81.1.1 108676,108677 1scuA 288 5.966 c.2.1.8,c.23.4.1 30307,31135 2q4eA 362 6.311 1luaA 287 6.392 c.2.1.7,c.58.1.4 78216,78217 3ceaA 346 7.208 2cmdA 312 7.317 c.2.1.5,d.162.1.1 30135,42102 1hdoA 206 7.473 c.2.1.2 60965 3c1aA 315 7.903 2czcA 334 8.567 d.81.1.1 131044 1l7dA 384 8.846 c.2.1.4,c.23.12.2 77774,77775 1vi2A 300 9.464 c.2.1.7,c.58.1.5 100726,100727 2ph5A 480 9.917 2nqtA 352 10.75 1nvmB 312 11.53 c.2.1.3,d.81.1.1 86251,86252 1drw 273 11.57 2z1nA 260 11.95 1lc0A 294 12.07 c.2.1.3,d.81.1.4 73823,73824 1b0aA 288 12.11 c.2.1.7,c.58.1.2 30286,33934 1rydA 387 12.80 c.2.1.3,d.81.1.5 118801,118802 1xcbA 211 13.21 a.4.5.38,c.2.1.12 109552,109553 1k2wA 256 13.83 c.2.1.2 90927 1drwA 273 15.99 c.2.1.3,d.81.1.3 30057,39972 1qydA 313 16.84 c.2.1.2 96583 2g17A 337 17.04 c.2.1.3,d.81.1.1 134512,134513 2v3aA 384 17.80 1jw9B 249 18.26 c.111.1.1 67377 2gz1A 366 18.39 c.2.1.3,d.81.1.1 135887,135888 2exxA 306 18.80 1zud1 251 20.61 2hjsA 340 21.27 c.2.1.3,d.81.1.1 136547,136548 2ozpA 345 22.22 2o4uX 334 24.29 1xhlA 297 24.66 c.2.1.2 109591 1n7hA 381 24.78 c.2.1.2 80250 1x7gA 261 25.23 c.2.1.2 114929 2q49A 359 26.86 c.2.1.3,d.81.1.1 139831,139832 2a4kA 263 28.22 c.2.1.2 126156 1xq6A 253 28.24 c.2.1.2 115829 1uufA 369 28.92 b.35.1.2,c.2.1.1 100006,100007 1gegA 256 30.19 c.2.1.2 29888 2yx0A 342 32.32 1k6xA 352 32.43 c.2.1.2 68238 1l1eA 287 33.29 c.66.1.18 73454 2pd6A 264 33.82 1fmcA 255 34.62 c.2.1.2 29856 2dt5A 211 34.74 a.4.5.38,c.2.1.12 131708,131709 1xseA 295 35.80 c.2.1.2 115925 2ag5A 246 35.94 c.2.1.2 126719 1qycA 308 36.45 c.2.1.2 96581 2gasA 307 36.76 1ydeA 270 36.90 c.2.1.2 122980 1xkqA 280 38.30 c.2.1.2 115417 1pl8A 356 38.51 b.35.1.2,c.2.1.1 94878,94879 2a9fA 398 39.08 2r6jA 318 39.61 1x13A 401 41.31 1kpgA 287 41.78 c.66.1.18 68735 2bzgA 232 41.79 c.66.1.36 129559 2cf5A 357 43.77 1spxA 278 44.48 c.2.1.2 98958 1zk4A 251 44.77 c.2.1.2 125176 1zh8A 340 45.62 c.2.1.3,d.81.1.5 125077,125078 1e7wA 291 45.73 c.2.1.2 59373 2qa1A 500 46.56 1id1A 153 46.85 c.2.1.9 62286 1l9cA 389 47.47 c.3.1.2,d.16.1.3 77815,77816 3bioA 304 47.52 2bryA 497 47.90 2jahA 247 47.99 1zmtA 254 48.06 c.2.1.2 125363 1cf2O 337 48.16 c.2.1.3,d.81.1.1 29994,39909 1yb1A 272 48.60 c.2.1.2 116599 1w6uA 302 48.82 c.2.1.2 114288 1b16A 254 48.82 c.2.1.2 29875 1ja9A 274 49.71 c.2.1.2 62817 1gtmA 419 50.17 c.2.1.7,c.58.1.1 30223,33871 1i2cA 404 50.44 c.2.1.2 83666 2r00A 336 50.48 5nul 138 50.53 1e3jA 352 50.69 b.35.1.2,c.2.1.1 24765,29781 1cydA 244 52.43 c.2.1.2 29825 1pwxA 254 52.50 c.2.1.2 95262 1orrA 347 52.56 c.2.1.2 93460 2gdzA 267 53.14 c.2.1.2 135043 2r0cA 549 53.16 1yxmA 303 53.24 c.2.1.2 124192 1o6zA 303 53.48 c.2.1.5,d.162.1.1 81107,81108 2c29D 337 54.28 1zd8A 227 54.57 2cduA 452 54.57 1rkxA 357 56.31 c.2.1.2 97631 2o23A 265 56.92 c.2.1.2 138884 2gf3A 389 56.97 c.3.1.2,d.16.1.3 135070,135071 2c5aA 379 57.99 c.2.1.2 129894 2ixaA 444 58.68 1vl8A 267 58.91 c.2.1.2 108733 1xgkA 352 59.42 c.2.1.2 115286 1zmdA 474 60.15 1pjqA 457 60.29 c.2.1.11,c.90.1.1,e.37.1.1 94766,94767,94768 1y1pA 342 60.61 c.2.1.2 122550 2pnfA 248 61.31 1nffA 260 61.48 c.2.1.2 80457 1xg5A 279 61.99 c.2.1.2 115277 1yqzA 438 63.51 1kewA 361 65.12 c.2.1.2 68544 2ph3A 245 66.08 2hsjA 214 67.38 1f4pA 147 70.22 c.23.5.1 59651 1xu9A 286 71.19 c.2.1.2 116052 2bgkA 278 71.27 c.2.1.2 128480 1pbeA 394 71.41 c.3.1.2,d.16.1.2 30338,37869 1hwxA 501 72.31 c.2.1.7,c.58.1.1 30250,33898 2fdxA 138 73.19 c.23.5.1 31192 2ekpA 239 73.39 2nwqA 272 73.51 1hxhA 253 73.68 c.2.1.2 76725 2gqwA 408 74.47 1hyuA 521 75.06 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1sbyA 254 77.44 c.2.1.2 118930 1t2aA 375 78.97 c.2.1.2 99078 1bgvA 449 79.41 c.2.1.7,c.58.1.1 30217,33865 1hdcA 253 81.62 c.2.1.2 29862 1db3A 372 82.42 c.2.1.2 29813 1fl2A 310 82.68 c.3.1.5,c.3.1.5 59869,59870 5nulA 138 83.06 c.23.5.1 31191 2b5wA 357 83.55 1q7bA 244 84.57 c.2.1.2 96026 2blnA 305 84.74 b.46.1.1,c.65.1.1 128734,128735 1othA 321 85.66 c.78.1.1,c.78.1.1 35260,35261 1in4A 334 86.63 a.4.5.11,c.37.1.20 62597,62598 1k7cA 233 87.25 c.23.10.4 68267 2o14A 375 87.44 1h5qA 265 87.99 c.2.1.2 60643 2b69A 343 89.86 c.2.1.2 127974