# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 1.53e-06 2h78A 302 2.38e-06 1vpdA 299 5.93e-06 a.100.1.1,c.2.1.6 113951,113952 2pgdA 482 9.97e-06 a.100.1.1,c.2.1.6 18778,30190 2p4qA 497 1.12e-05 2cvzA 289 2.69e-05 a.100.1.1,c.2.1.6 130890,130891 2ahrA 259 2.83e-05 a.100.1.10,c.2.1.6 126775,126776 2f1kA 279 2.97e-05 a.100.1.12,c.2.1.6 132772,132773 2rcyA 262 3.02e-05 2izzA 322 3.77e-05 2graA 277 4.90e-05 2i76A 276 4.91e-05 1pgjA 478 6.44e-05 a.100.1.1,c.2.1.6 18783,30195 2pgd 482 7.60e-05 1yqgA 263 7.90e-05 2g5cA 281 8.69e-05 a.100.1.12,c.2.1.6 134646,134647 1np3A 338 0.000191 a.100.1.2,c.2.1.6 85946,85947 2pv7A 298 0.000203 1ks9A 291 0.000347 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.000440 2ew2A 316 0.000720 1txgA 335 0.000787 a.100.1.6,c.2.1.6 112775,112776 3c24A 286 0.001104 1i36A 264 0.001170 a.100.1.8,c.2.1.6 71108,71109 1evyA 366 0.001762 a.100.1.6,c.2.1.6 18811,30215 1bg6 359 0.001918 1qmgA 524 0.003627 a.100.1.2,c.2.1.6 18785,30182 1zejA 293 0.005590 1z82A 335 0.005645 1f0yA 302 0.005663 a.100.1.3,c.2.1.6 18793,30197 2o3jA 481 0.006448 1dliA 402 0.02274 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1dljA 402 0.02381 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zcjA 463 0.02673 1jayA 212 0.03300 c.2.1.6 66478 1bg6A 359 0.06323 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.1003 1ff9A 450 0.1747 c.2.1.3,d.81.1.2 30039,39954 1mv8A 436 0.1907 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2nacA 393 0.2384 c.2.1.4,c.23.12.1 30088,31348 1tltA 319 0.2683 c.2.1.3,d.81.1.5 107135,107136 2dpoA 319 0.2863 1gdhA 320 0.3283 c.2.1.4,c.23.12.1 30095,31355 1mx3A 347 0.3555 c.2.1.4,c.23.12.1 79638,79639 1vllA 334 0.3567 c.2.1.13 108834 2qytA 317 0.4116 1li4A 432 0.5234 c.2.1.4,c.23.12.3 84616,84617 1omoA 322 0.5848 c.2.1.13 104017 1d4fA 431 0.5896 c.2.1.4,c.23.12.3 30110,31370 1v8bA 479 0.6104 c.2.1.4,c.23.12.3 113564,113565 2fssA 365 0.6296 2g76A 335 0.6369 1lldA 319 0.6984 c.2.1.5,d.162.1.1 30177,42144 1wwkA 307 0.7289 1psdA 409 0.7345 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 2hk9A 275 0.8819 1x7dA 350 0.9847 c.2.1.13 114927 2dbqA 334 1.022 1xdwA 331 1.039 1j4aA 333 1.044 c.2.1.4,c.23.12.1 71502,71503 1xwfA 431 1.118 c.2.1.4,c.23.12.3 122392,122393 2d0iA 333 1.148 2j6iA 364 1.203 1t2dA 322 1.279 c.2.1.5,d.162.1.1 99084,99085 1gpjA 404 1.308 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1xeaA 323 1.334 c.2.1.3,d.81.1.5 109572,109573 1pzgA 331 1.448 c.2.1.5,d.162.1.1 95425,95426 1dxy 333 1.482 2b0jA 358 1.493 a.100.1.11,c.2.1.6 127639,127640 1ygyA 529 1.563 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1ldg 316 1.676 1uxjA 309 1.804 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 1.947 c.2.1.5,d.162.1.1 99807,99808 1sc6A 404 2.386 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1gcuA 295 2.649 c.2.1.3,d.81.1.4 30063,39978 2gcgA 330 2.884 1u8xX 472 2.992 c.2.1.5,d.162.1.2 107741,107742 6ldhA 329 3.180 c.2.1.5,d.162.1.1 30161,42128 2ewdA 317 3.208 2pi1A 334 3.247 1nytA 271 3.292 c.2.1.7,c.58.1.5 86417,86418 1hyhA 309 3.701 c.2.1.5,d.162.1.1 30150,42117 2nvwA 479 3.913 c.2.1.3,d.81.1.5 138665,138666 2eggA 297 4.042 2g17A 337 4.444 c.2.1.3,d.81.1.1 134512,134513 3ceaA 346 4.488 2o4cA 380 4.508 2glxA 332 4.616 1lssA 140 4.711 c.2.1.9 74246 2d5cA 263 4.722 1ez4A 318 4.944 c.2.1.5,d.162.1.1 64917,64918 1up7A 417 5.170 c.2.1.5,d.162.1.2 113374,113375 3c1aA 315 5.292 2v7pA 310 5.590 1guzA 310 5.698 c.2.1.5,d.162.1.1 65586,65587 1ofgA 381 5.762 c.2.1.3,d.81.1.5 30064,39979 2vojA 371 5.857 1s6yA 450 5.975 c.2.1.5,d.162.1.2 105314,105315 1up6A 416 6.056 c.2.1.5,d.162.1.2 107976,107977 2q49A 359 6.115 c.2.1.3,d.81.1.1 139831,139832 2ho3A 325 6.196 1zh8A 340 6.466 c.2.1.3,d.81.1.5 125077,125078 2axqA 467 6.473 2nloA 302 7.003 2vhxA 377 7.454 2hmvA 144 7.585 c.2.1.9 136615 1dxyA 333 7.585 c.2.1.4,c.23.12.1 30094,31354 2g1uA 155 7.703 2p2sA 336 7.704 2q4eA 362 7.866 2dc1A 236 7.956 1vjtA 483 8.275 c.2.1.5,d.162.1.2 100833,100834 1lehA 364 8.463 c.2.1.7,c.58.1.1 30268,33916 1nvmB 312 8.464 c.2.1.3,d.81.1.1 86251,86252 2o4uX 334 9.058 1qp8A 303 9.159 c.2.1.4,c.23.12.1 30092,31352 1hdoA 206 9.207 c.2.1.2 60965 2r6jA 318 9.209 2i6tA 303 9.413 2eklA 313 9.450 1f06A 320 9.569 c.2.1.3,d.81.1.3 59556,59557 2gptA 523 9.883 1npyA 271 10.49 c.2.1.7,c.58.1.5 85995,85996 1luaA 287 10.61 c.2.1.7,c.58.1.4 78216,78217 1vknA 351 11.05 c.2.1.3,d.81.1.1 108676,108677 1h6dA 433 11.16 c.2.1.3,d.81.1.5 65656,65657 2nqtA 352 11.17 1nvtA 287 11.18 c.2.1.7,c.58.1.5 86270,86271 2ozpA 345 11.26 1q7gA 359 11.33 c.2.1.3,d.81.1.2 96038,96039 1a5zA 319 11.43 c.2.1.5,d.162.1.1 30181,42148 2ph5A 480 11.69 1j5pA 253 12.25 d.81.1.3,c.2.1.3 71577,83092 1pjcA 361 12.41 c.2.1.4,c.23.12.2 30101,31361 1p77A 272 12.60 c.2.1.7,c.58.1.5 94214,94215 1lsuA 147 12.79 c.2.1.9 74250 2o7sA 523 12.92 1qydA 313 13.32 c.2.1.2 96583 1c1dA 355 14.34 c.2.1.7,c.58.1.1 30270,33918 2hjsA 340 14.77 c.2.1.3,d.81.1.1 136547,136548 1drw 273 14.90 1obbA 480 15.13 c.2.1.5,d.162.1.2 86760,86761 2aefA 234 16.62 2gz1A 366 17.23 c.2.1.3,d.81.1.1 135887,135888 1qv9A 283 17.89 c.127.1.1 96356 1drwA 273 18.53 c.2.1.3,d.81.1.3 30057,39972 2gasA 307 19.02 1n7hA 381 19.32 c.2.1.2 80250 1k6xA 352 20.59 c.2.1.2 68238 1lc0A 294 20.82 c.2.1.3,d.81.1.4 73823,73824 1xq6A 253 21.04 c.2.1.2 115829 1rydA 387 21.12 c.2.1.3,d.81.1.5 118801,118802 2ixaA 444 22.23 1vi2A 300 22.41 c.2.1.7,c.58.1.5 100726,100727 1qycA 308 22.99 c.2.1.2 96581 1l7dA 384 23.89 c.2.1.4,c.23.12.2 77774,77775 3c85A 183 24.38 2cukA 311 25.55 1id1A 153 26.97 c.2.1.9 62286 1ek6A 348 27.23 c.2.1.2 29800 2d59A 144 29.53 c.2.1.8 131266 1iukA 140 30.35 c.2.1.8 83712 2r00A 336 31.99 1a4iA 301 32.19 c.2.1.7,c.58.1.2 30278,33926 1t2aA 375 32.86 c.2.1.2 99078 1bdb 277 36.47 1e6wA 260 36.94 c.2.1.2 59326 2q46A 253 38.87 c.2.1.2 139825 2c5aA 379 39.08 c.2.1.2 129894 2cmdA 312 39.19 c.2.1.5,d.162.1.1 30135,42102 1hxhA 253 40.74 c.2.1.2 76725 2bllA 345 42.54 c.2.1.2 128733 1orrA 347 43.55 c.2.1.2 93460 1t4bA 367 44.40 c.2.1.3,d.81.1.1 106406,106407 2exxA 306 44.43 1bdbA 277 44.61 c.2.1.2 29874 1ja9A 274 44.97 c.2.1.2 62817 1rpnA 335 45.62 c.2.1.2 97708 1o6zA 303 47.37 c.2.1.5,d.162.1.1 81107,81108 2pzmA 330 47.87 1nffA 260 48.15 c.2.1.2 80457 2csuA 457 48.41 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 3c8mA 331 49.34 2b69A 343 50.89 c.2.1.2 127974 2o23A 265 51.68 c.2.1.2 138884 1othA 321 54.47 c.78.1.1,c.78.1.1 35260,35261 1x7gA 261 54.65 c.2.1.2 114929 1h5qA 265 55.27 c.2.1.2 60643 1hdcA 253 55.50 c.2.1.2 29862 2czcA 334 57.86 d.81.1.1 131044 3bioA 304 62.17 1sb8A 352 62.61 c.2.1.2 105410 1xg5A 279 62.95 c.2.1.2 115277 1q7bA 244 63.90 c.2.1.2 96026 1x13A 401 64.25 1b7gO 340 66.93 c.2.1.3,d.81.1.1 29992,39907 1zemA 262 68.85 c.2.1.2 124984 1hyuA 521 69.69 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1gegA 256 72.07 c.2.1.2 29888 1b0aA 288 72.50 c.2.1.7,c.58.1.2 30286,33934 1rkxA 357 72.60 c.2.1.2 97631 1kjqA 391 73.34 b.84.2.1,c.30.1.1,d.142.1.2 72616,72617,72618 1brmA 367 73.48 c.2.1.3,d.81.1.1 30030,39945 1mb4A 370 73.71 c.2.1.3,d.81.1.1 78908,78909 2z1mA 345 74.74 1qsgA 265 76.50 c.2.1.2 29935 1vl6A 388 77.88 c.2.1.7,c.58.1.3 108724,108725 1u9jA 358 79.95 c.2.1.2 113243 1eyzA 392 80.52 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 1fl2A 310 81.83 c.3.1.5,c.3.1.5 59869,59870 1y81A 138 81.93 c.2.1.8 122731 2yutA 207 85.39 1zud1 251 85.99 1cf2O 337 87.61 c.2.1.3,d.81.1.1 29994,39909 1xel 338 88.32 1nhp 447 89.16