# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1yb4A 295 9.99e-06 2h78A 302 1.88e-05 2i76A 276 3.09e-05 1vpdA 299 4.26e-05 a.100.1.1,c.2.1.6 113951,113952 2ahrA 259 4.53e-05 a.100.1.10,c.2.1.6 126775,126776 2pgdA 482 4.89e-05 a.100.1.1,c.2.1.6 18778,30190 2rcyA 262 5.58e-05 2izzA 322 5.60e-05 2p4qA 497 6.27e-05 2graA 277 6.31e-05 2f1kA 279 8.09e-05 a.100.1.12,c.2.1.6 132772,132773 1yqgA 263 9.45e-05 2cvzA 289 0.000121 a.100.1.1,c.2.1.6 130890,130891 2pv7A 298 0.000222 2g5cA 281 0.000236 a.100.1.12,c.2.1.6 134646,134647 2pgd 482 0.000366 1pgjA 478 0.000510 a.100.1.1,c.2.1.6 18783,30195 1np3A 338 0.000543 a.100.1.2,c.2.1.6 85946,85947 3c24A 286 0.001077 1ks9A 291 0.001737 a.100.1.7,c.2.1.6 68857,68858 1yrlA 491 0.002473 1i36A 264 0.003084 a.100.1.8,c.2.1.6 71108,71109 1txgA 335 0.003142 a.100.1.6,c.2.1.6 112775,112776 1bg6 359 0.003684 1evyA 366 0.005111 a.100.1.6,c.2.1.6 18811,30215 2ew2A 316 0.005373 1qmgA 524 0.005478 a.100.1.2,c.2.1.6 18785,30182 1zejA 293 0.01111 2o3jA 481 0.01457 1f0yA 302 0.01464 a.100.1.3,c.2.1.6 18793,30197 1z82A 335 0.02148 1dljA 402 0.02621 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 0.02848 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1mv8A 436 0.04099 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1zcjA 463 0.06052 1jayA 212 0.08629 c.2.1.6 66478 1ff9A 450 0.2449 c.2.1.3,d.81.1.2 30039,39954 1bg6A 359 0.2738 a.100.1.5,c.2.1.6 18810,30214 1x0vA 354 0.2835 2dpoA 319 0.3090 2nacA 393 0.8449 c.2.1.4,c.23.12.1 30088,31348 2qytA 317 1.048 1gdhA 320 1.065 c.2.1.4,c.23.12.1 30095,31355 1tltA 319 1.304 c.2.1.3,d.81.1.5 107135,107136 1mx3A 347 1.374 c.2.1.4,c.23.12.1 79638,79639 2fssA 365 1.513 1u8xX 472 1.535 c.2.1.5,d.162.1.2 107741,107742 2g76A 335 1.558 1vllA 334 1.619 c.2.1.13 108834 1j4aA 333 1.795 c.2.1.4,c.23.12.1 71502,71503 2j6iA 364 1.805 2b0jA 358 1.870 a.100.1.11,c.2.1.6 127639,127640 1psdA 409 2.028 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1lldA 319 2.032 c.2.1.5,d.162.1.1 30177,42144 1wwkA 307 2.038 1xdwA 331 2.049 1gpjA 404 2.263 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1d4fA 431 2.385 c.2.1.4,c.23.12.3 30110,31370 1omoA 322 2.483 c.2.1.13 104017 1x7dA 350 2.613 c.2.1.13 114927 2d0iA 333 3.000 1xwfA 431 3.062 c.2.1.4,c.23.12.3 122392,122393 1s6yA 450 3.131 c.2.1.5,d.162.1.2 105314,105315 1li4A 432 3.193 c.2.1.4,c.23.12.3 84616,84617 2hk9A 275 3.275 1uxjA 309 3.344 c.2.1.5,d.162.1.1 108112,108113 1pzgA 331 3.402 c.2.1.5,d.162.1.1 95425,95426 2dbqA 334 3.405 1dxy 333 3.464 1ldg 316 3.498 1gcuA 295 3.517 c.2.1.3,d.81.1.4 30063,39978 1ur5A 309 3.545 c.2.1.5,d.162.1.1 99807,99808 1xeaA 323 3.728 c.2.1.3,d.81.1.5 109572,109573 1t2dA 322 3.760 c.2.1.5,d.162.1.1 99084,99085 1v8bA 479 4.938 c.2.1.4,c.23.12.3 113564,113565 1up6A 416 4.941 c.2.1.5,d.162.1.2 107976,107977 1ygyA 529 5.015 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 1lssA 140 5.358 c.2.1.9 74246 1up7A 417 5.380 c.2.1.5,d.162.1.2 113374,113375 1sc6A 404 5.465 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 2gcgA 330 5.775 2nvwA 479 5.926 c.2.1.3,d.81.1.5 138665,138666 3c1aA 315 5.937 2glxA 332 6.606 1nytA 271 6.793 c.2.1.7,c.58.1.5 86417,86418 2d5cA 263 6.924 3ceaA 346 7.404 1hyhA 309 7.806 c.2.1.5,d.162.1.1 30150,42117 2eggA 297 8.168 1guzA 310 8.220 c.2.1.5,d.162.1.1 65586,65587 2ewdA 317 8.469 2nloA 302 8.584 2dc1A 236 8.637 1zh8A 340 8.707 c.2.1.3,d.81.1.5 125077,125078 2q4eA 362 9.471 2o4cA 380 9.568 1npyA 271 9.906 c.2.1.7,c.58.1.5 85995,85996 2hmvA 144 10.24 c.2.1.9 136615 2pi1A 334 10.54 1obbA 480 10.86 c.2.1.5,d.162.1.2 86760,86761 1luaA 287 11.16 c.2.1.7,c.58.1.4 78216,78217 2p2sA 336 11.45 1lsuA 147 11.57 c.2.1.9 74250 1lehA 364 11.80 c.2.1.7,c.58.1.1 30268,33916 1qv9A 283 11.93 c.127.1.1 96356 2gptA 523 12.14 6ldhA 329 12.26 c.2.1.5,d.162.1.1 30161,42128 1nvtA 287 12.77 c.2.1.7,c.58.1.5 86270,86271 1j5pA 253 12.82 d.81.1.3,c.2.1.3 71577,83092 1f06A 320 13.21 c.2.1.3,d.81.1.3 59556,59557 1c1dA 355 14.23 c.2.1.7,c.58.1.1 30270,33918 2i6tA 303 14.35 2g1uA 155 14.36 1pjcA 361 14.56 c.2.1.4,c.23.12.2 30101,31361 2ho3A 325 14.59 2o7sA 523 14.90 1p77A 272 15.80 c.2.1.7,c.58.1.5 94214,94215 2o4uX 334 15.81 1hdoA 206 16.82 c.2.1.2 60965 1vjtA 483 16.93 c.2.1.5,d.162.1.2 100833,100834 1ez4A 318 17.48 c.2.1.5,d.162.1.1 64917,64918 1qp8A 303 17.60 c.2.1.4,c.23.12.1 30092,31352 2v7pA 310 17.79 1dxyA 333 18.47 c.2.1.4,c.23.12.1 30094,31354 2vhxA 377 18.60 1nvmB 312 18.88 c.2.1.3,d.81.1.1 86251,86252 1a5zA 319 18.94 c.2.1.5,d.162.1.1 30181,42148 2axqA 467 19.90 1vknA 351 20.80 c.2.1.3,d.81.1.1 108676,108677 2nqtA 352 21.47 2hjsA 340 21.95 c.2.1.3,d.81.1.1 136547,136548 1rydA 387 22.40 c.2.1.3,d.81.1.5 118801,118802 1lc0A 294 22.48 c.2.1.3,d.81.1.4 73823,73824 1vi2A 300 23.47 c.2.1.7,c.58.1.5 100726,100727 2eklA 313 25.00 2czcA 334 28.23 d.81.1.1 131044 2q49A 359 29.92 c.2.1.3,d.81.1.1 139831,139832 1ofgA 381 30.07 c.2.1.3,d.81.1.5 30064,39979 2vojA 371 30.26 2g17A 337 30.37 c.2.1.3,d.81.1.1 134512,134513 2cukA 311 30.65 1drw 273 31.11 2d59A 144 31.24 c.2.1.8 131266 3c85A 183 32.72 2gz1A 366 32.93 c.2.1.3,d.81.1.1 135887,135888 1h6dA 433 33.23 c.2.1.3,d.81.1.5 65656,65657 1iukA 140 33.55 c.2.1.8 83712 2r6jA 318 34.29 1drwA 273 34.46 c.2.1.3,d.81.1.3 30057,39972 1k6xA 352 35.03 c.2.1.2 68238 2aefA 234 35.25 3c8mA 331 38.15 1id1A 153 41.15 c.2.1.9 62286 1xq6A 253 41.58 c.2.1.2 115829 1qydA 313 44.74 c.2.1.2 96583 2csuA 457 45.55 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 1a4iA 301 45.69 c.2.1.7,c.58.1.2 30278,33926 2r00A 336 50.72 2ozpA 345 50.96 2ph5A 480 51.12 1t2aA 375 56.28 c.2.1.2 99078 1scuA 288 58.61 c.2.1.8,c.23.4.1 30307,31135 1l7dA 384 58.66 c.2.1.4,c.23.12.2 77774,77775 1wmaA 276 59.77 c.2.1.2 121042 1yovA 537 61.31 c.111.1.2 123785 1x7gA 261 62.71 c.2.1.2 114929 1ys4A 354 63.27 2ixaA 444 63.72 1n7hA 381 63.94 c.2.1.2 80250 2cmdA 312 64.74 c.2.1.5,d.162.1.1 30135,42102 2gasA 307 67.57 2exxA 306 69.51 1k2wA 256 70.50 c.2.1.2 90927 1nffA 260 71.70 c.2.1.2 80457 2q46A 253 74.04 c.2.1.2 139825 1cf2O 337 75.08 c.2.1.3,d.81.1.1 29994,39909 1gegA 256 75.89 c.2.1.2 29888 1bdbA 277 77.75 c.2.1.2 29874 1rkxA 357 78.77 c.2.1.2 97631 1hxhA 253 80.61 c.2.1.2 76725 1y81A 138 83.11 c.2.1.8 122731 2c5aA 379 85.36 c.2.1.2 129894 1e6wA 260 86.27 c.2.1.2 59326 1x13A 401 88.62