# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2h78A 302 0.5891 1vpdA 299 0.9250 a.100.1.1,c.2.1.6 113951,113952 1yb4A 295 1.098 2ahrA 259 1.211 a.100.1.10,c.2.1.6 126775,126776 2p4qA 497 1.295 2rcyA 262 1.604 2pgdA 482 1.757 a.100.1.1,c.2.1.6 18778,30190 2cvzA 289 1.804 a.100.1.1,c.2.1.6 130890,130891 2izzA 322 1.906 1yqgA 263 1.960 1pgjA 478 2.032 a.100.1.1,c.2.1.6 18783,30195 2graA 277 2.311 2f1kA 279 2.393 a.100.1.12,c.2.1.6 132772,132773 2g5cA 281 2.516 a.100.1.12,c.2.1.6 134646,134647 2i76A 276 2.643 2pgd 482 3.004 1yrlA 491 3.081 1f0yA 302 4.428 a.100.1.3,c.2.1.6 18793,30197 1bg6 359 4.634 2ew2A 316 5.015 1evyA 366 5.446 a.100.1.6,c.2.1.6 18811,30215 3c24A 286 5.860 2pv7A 298 5.985 1i36A 264 6.310 a.100.1.8,c.2.1.6 71108,71109 1z82A 335 6.486 1np3A 338 6.488 a.100.1.2,c.2.1.6 85946,85947 1zcjA 463 6.927 1x0vA 354 7.849 1dliA 402 7.992 a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1txgA 335 8.124 a.100.1.6,c.2.1.6 112775,112776 1qmgA 524 8.165 a.100.1.2,c.2.1.6 18785,30182 1ks9A 291 8.572 a.100.1.7,c.2.1.6 68857,68858 1dljA 402 8.804 a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1zejA 293 9.154 1bg6A 359 9.589 a.100.1.5,c.2.1.6 18810,30214 1mv8A 436 10.15 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 2dpoA 319 12.52 2o3jA 481 16.62 2qytA 317 17.02 1jayA 212 19.58 c.2.1.6 66478 2hk9A 275 23.93 1xwfA 431 27.91 c.2.1.4,c.23.12.3 122392,122393 1v8bA 479 27.95 c.2.1.4,c.23.12.3 113564,113565 1d4fA 431 29.89 c.2.1.4,c.23.12.3 30110,31370 1li4A 432 31.17 c.2.1.4,c.23.12.3 84616,84617 1lldA 319 32.83 c.2.1.5,d.162.1.1 30177,42144 2q4eA 362 35.23 2nacA 393 35.80 c.2.1.4,c.23.12.1 30088,31348 3ceaA 346 35.82 1x7dA 350 37.02 c.2.1.13 114927 2glxA 332 37.79 2d5cA 263 39.08 2g76A 335 41.44 2o4uX 334 42.12 2i6tA 303 43.92 1pzgA 331 44.86 c.2.1.5,d.162.1.1 95425,95426 1lehA 364 45.33 c.2.1.7,c.58.1.1 30268,33916 1xeaA 323 47.10 c.2.1.3,d.81.1.5 109572,109573 1c1dA 355 47.38 c.2.1.7,c.58.1.1 30270,33918 1ldg 316 47.44 2eggA 297 50.84 6ldhA 329 51.55 c.2.1.5,d.162.1.1 30161,42128 1t2dA 322 54.27 c.2.1.5,d.162.1.1 99084,99085 1a5zA 319 54.66 c.2.1.5,d.162.1.1 30181,42148 1ff9A 450 55.60 c.2.1.3,d.81.1.2 30039,39954 2nvwA 479 56.34 c.2.1.3,d.81.1.5 138665,138666 1rydA 387 56.75 c.2.1.3,d.81.1.5 118801,118802 1nytA 271 56.96 c.2.1.7,c.58.1.5 86417,86418 1h6dA 433 58.12 c.2.1.3,d.81.1.5 65656,65657 1tltA 319 59.31 c.2.1.3,d.81.1.5 107135,107136 1wwkA 307 61.98 1vllA 334 62.30 c.2.1.13 108834 1psdA 409 63.44 c.2.1.4,c.23.12.1,d.58.18.1 30097,31357,39354 1qydA 313 64.46 c.2.1.2 96583 1uxjA 309 64.56 c.2.1.5,d.162.1.1 108112,108113 1ez4A 318 65.15 c.2.1.5,d.162.1.1 64917,64918 2ewdA 317 65.55 2fk8A 318 65.77 c.66.1.18 133648 1ofgA 381 66.71 c.2.1.3,d.81.1.5 30064,39979 2v7pA 310 68.32 1ur5A 309 70.67 c.2.1.5,d.162.1.1 99807,99808 1mx3A 347 71.32 c.2.1.4,c.23.12.1 79638,79639 1npyA 271 71.37 c.2.1.7,c.58.1.5 85995,85996 1obbA 480 72.00 c.2.1.5,d.162.1.2 86760,86761 1omoA 322 72.41 c.2.1.13 104017 1ygyA 529 73.97 c.2.1.4,c.23.12.1,d.58.18.1,d.81.2.2 123150,123151,123152,123153 2b0jA 358 75.81 a.100.1.11,c.2.1.6 127639,127640 1zh8A 340 77.58 c.2.1.3,d.81.1.5 125077,125078 1qycA 308 77.63 c.2.1.2 96581 1pjcA 361 77.72 c.2.1.4,c.23.12.2 30101,31361 1nvmB 312 77.73 c.2.1.3,d.81.1.1 86251,86252 2a4kA 263 78.13 c.2.1.2 126156 1guzA 310 78.22 c.2.1.5,d.162.1.1 65586,65587 2dbqA 334 79.36 2r6jA 318 80.51 2ho3A 325 81.24 2axqA 467 81.52 1sc6A 404 83.02 c.2.1.4,c.23.12.1,d.58.18.1 118932,118933,118934 1lssA 140 83.02 c.2.1.9 74246 1l7dA 384 83.50 c.2.1.4,c.23.12.2 77774,77775 1hyhA 309 84.33 c.2.1.5,d.162.1.1 30150,42117 2eklA 313 88.02 1kpgA 287 89.91 c.66.1.18 68735 1yovA 537 89.92 c.111.1.2 123785