Best Alignments for T0393

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1yqgA/T0393-1yqgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yqgA/T0393-1yqgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4686e-174.01e-96
2ahrA/T0393-2ahrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ahrA/T0393-2ahrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.2561e-171.52e-102 a.100.1.10
c.2.1.6
2i76A/T0393-2i76A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2i76A/T0393-2i76A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4017e-161.86e-65
1vpdA/T0393-1vpdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vpdA/T0393-1vpdA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1572e-161.87e-92 a.100.1.1
c.2.1.6
2rcyA/T0393-2rcyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2rcyA/T0393-2rcyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1239e-151.01e-91
2izzA/T0393-2izzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2izzA/T0393-2izzA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.5056e-157.77e-97
2graA/T0393-2graA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2graA/T0393-2graA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2573e-141.89e-82
1yb4A/T0393-1yb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yb4A/T0393-1yb4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4693e-144.60e-79
2h78A/T0393-2h78A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2h78A/T0393-2h78A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6490e-142.18e-85
2f1kA/T0393-2f1kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f1kA/T0393-2f1kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0788e-137.82e-75 a.100.1.12
c.2.1.6

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001