Best Alignments for T0393

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vpdA/T0393-1vpdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vpdA/T0393-1vpdA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8993e-201.06e-126 a.100.1.1
c.2.1.6
1yb4A/T0393-1yb4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yb4A/T0393-1yb4A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.1729e-181.33e-108
2h78A/T0393-2h78A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2h78A/T0393-2h78A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.3426e-183.23e-126
2izzA/T0393-2izzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2izzA/T0393-2izzA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4953e-172.41e-115
2graA/T0393-2graA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2graA/T0393-2graA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8051e-176.64e-96
2rcyA/T0393-2rcyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2rcyA/T0393-2rcyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.9882e-171.05e-99
2ahrA/T0393-2ahrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ahrA/T0393-2ahrA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4464e-162.24e-105 a.100.1.10
c.2.1.6
1yqgA/T0393-1yqgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1yqgA/T0393-1yqgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7224e-161.20e-100
3cumA/T0393-3cumA-t04-global-adpstyle1.a2m 3cumA/T0393-3cumA-t04-global-adpstyle1.al 1.7130e-154.85e-49
2i9pA/T0393-2i9pA-t04-global-adpstyle1.a2m 2i9pA/T0393-2i9pA-t04-global-adpstyle1.al 1.8870e-154.85e-49

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001