PFRMAT SS
TARGET T0393
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0393.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 640
METHOD
MODEL 1
M C 0.861
K C 0.682
R C 0.538
S T 0.544
I T 0.620
E T 0.697
D T 0.786
T T 0.419
P E 0.704
I E 0.986
V E 0.994
L E 0.993
I E 0.973
G E 0.671
A C 0.662
G C 0.717
N H 0.964
L H 0.974
A H 0.997
T H 0.998
N H 0.998
L H 0.998
A H 0.997
K H 0.996
A H 0.994
L H 0.992
Y H 0.973
R H 0.942
K H 0.787
G C 0.915
F C 0.865
R C 0.514
I E 0.942
V E 0.983
Q E 0.977
V E 0.932
Y E 0.734
S C 0.481
R C 0.579
T C 0.874
E H 0.908
E H 0.946
S H 0.972
A H 0.994
R H 0.993
E H 0.994
L H 0.992
A H 0.984
Q H 0.969
K H 0.902
V H 0.613
E C 0.853
A C 0.766
E C 0.521
Y C 0.431
T C 0.512
T C 0.662
D C 0.767
L H 0.832
A H 0.836
E H 0.780
V H 0.817
N H 0.712
P H 0.483
Y T 0.455
A T 0.574
K C 0.521
L E 0.952
Y E 0.996
I E 0.995
V E 0.981
S E 0.840
L C 0.612
K C 0.752
D T 0.527
S H 0.354
A H 0.590
F H 0.867
A H 0.921
E H 0.916
L H 0.931
L H 0.899
Q H 0.892
G H 0.833
I H 0.712
V H 0.568
E H 0.532
G H 0.361
K T 0.302
R T 0.723
E T 0.829
E T 0.868
A E 0.499
L E 0.938
M E 0.985
V E 0.982
H E 0.919
T E 0.552
A T 0.440
G T 0.494
S T 0.451
I C 0.390
P T 0.388
M H 0.413
N H 0.508
V H 0.631
W H 0.665
E H 0.685
G H 0.730
H H 0.734
V H 0.719
P H 0.585
H H 0.338
Y C 0.525
G C 0.541
V E 0.486
F E 0.767
Y E 0.794
P E 0.676
M E 0.389
Q T 0.411
T T 0.483
F T 0.525
S T 0.487
K T 0.389
Q H 0.368
R H 0.510
E H 0.515
V H 0.505
D H 0.541
F H 0.444
K C 0.316
E C 0.441
I C 0.341
P E 0.427
F E 0.676
F E 0.653
I E 0.488
E T 0.338
A T 0.434
S C 0.556
S C 0.779
T H 0.891
E H 0.928
D H 0.961
A H 0.989
A H 0.989
F H 0.989
L H 0.986
K H 0.990
A H 0.979
I H 0.983
A H 0.953
S H 0.901
T H 0.800
L H 0.534
S C 0.554
N C 0.518
R E 0.607
V E 0.873
Y E 0.918
D E 0.884
A E 0.544
D C 0.504
S T 0.585
E T 0.490
Q H 0.440
R H 0.699
K H 0.822
S H 0.797
L H 0.820
H H 0.898
L H 0.945
A H 0.952
A H 0.945
V H 0.910
F H 0.844
T H 0.868
C H 0.933
N H 0.965
F H 0.981
T H 0.993
N H 0.997
H H 0.997
M H 0.997
Y H 0.998
A H 0.997
L H 0.996
A H 0.997
A H 0.994
E H 0.989
L H 0.991
L H 0.978
K H 0.952
K H 0.936
Y H 0.866
N C 0.942
L C 0.924
P C 0.900
F H 0.612
D H 0.583
V H 0.650
M H 0.940
L H 0.961
P H 0.959
L H 0.959
I H 0.971
D H 0.966
E H 0.943
T H 0.941
A H 0.894
R H 0.925
K H 0.752
V H 0.796
H H 0.760
E H 0.819
L H 0.753
E C 0.595
P C 0.334
K T 0.297
T T 0.316
A T 0.318
Q T 0.428
T T 0.395
G C 0.530
P C 0.390
A T 0.371
I T 0.329
R T 0.325
Y C 0.414
D C 0.421
E H 0.983
N H 0.992
V H 0.995
I H 0.999
G H 0.999
N H 0.999
H H 0.999
L H 0.998
R H 0.994
M H 0.985
L H 0.957
A H 0.887
D H 0.701
D H 0.469
P H 0.434
A H 0.689
M H 0.792
Q H 0.843
R H 0.925
L H 0.954
Y H 0.956
E H 0.947
L H 0.936
L H 0.901
S H 0.866
R H 0.839
S H 0.806
I H 0.710
H H 0.572
E H 0.506
R C 0.555
Q C 0.814
END