PFRMAT SS
TARGET T0393
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0393.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 640
METHOD
MODEL 1
M C 0.996
K C 0.743
R C 0.484
S C 0.541
I C 0.314
E T 0.472
D T 0.492
T S 0.506
P C 0.430
I E 0.921
V E 0.983
L E 0.985
I E 0.952
G C 0.495
A C 0.518
G S 0.313
N H 0.851
L H 0.941
A H 0.980
T H 0.988
N H 0.992
L H 0.995
A H 0.995
K H 0.995
A H 0.996
L H 0.996
Y H 0.989
R H 0.894
K T 0.831
G T 0.960
F C 0.937
R E 0.489
I E 0.978
V E 0.994
Q E 0.995
V E 0.966
Y E 0.760
S C 0.377
R C 0.608
T C 0.723
E H 0.769
E H 0.831
S H 0.870
A H 0.958
R H 0.958
E H 0.953
L H 0.955
A H 0.947
Q H 0.881
K H 0.778
V H 0.409
E T 0.572
A C 0.834
E C 0.644
Y C 0.498
T C 0.513
T C 0.335
D C 0.439
L H 0.711
A H 0.808
E H 0.826
V H 0.853
N H 0.637
P T 0.504
Y T 0.643
A C 0.847
K S 0.716
L E 0.985
Y E 0.998
I E 0.999
V E 0.991
S E 0.610
L C 0.500
K C 0.748
D C 0.340
S T 0.307
A H 0.465
F H 0.785
A H 0.872
E H 0.902
L H 0.922
L H 0.932
Q H 0.875
G H 0.832
I H 0.753
V H 0.675
E H 0.592
G H 0.519
K H 0.325
R C 0.419
E T 0.699
E T 0.739
A C 0.586
L E 0.771
M E 0.945
V E 0.970
H E 0.940
T E 0.710
A C 0.418
G C 0.256
S S 0.284
I C 0.461
P C 0.763
M H 0.576
N H 0.597
V H 0.664
W H 0.717
E H 0.723
G H 0.750
H H 0.704
V H 0.595
P H 0.422
H T 0.316
Y T 0.471
G C 0.452
V E 0.422
F E 0.723
Y E 0.738
P E 0.698
M E 0.481
Q C 0.516
T C 0.431
F C 0.306
S C 0.430
K C 0.325
Q H 0.394
R H 0.515
E H 0.618
V H 0.553
D H 0.479
F H 0.360
K C 0.311
E C 0.277
I C 0.258
P E 0.400
F E 0.555
F E 0.546
I E 0.359
E C 0.257
A T 0.280
S C 0.504
S C 0.710
T H 0.918
E H 0.945
D H 0.962
A H 0.984
A H 0.978
F H 0.971
L H 0.980
K H 0.988
A H 0.989
I H 0.989
A H 0.985
S H 0.926
T H 0.787
L H 0.453
S T 0.770
N C 0.469
R C 0.516
V E 0.641
Y E 0.829
D E 0.836
A E 0.484
D C 0.752
S T 0.323
E H 0.319
Q H 0.500
R H 0.774
K H 0.833
S H 0.905
L H 0.922
H H 0.934
L H 0.923
A H 0.943
A H 0.924
V H 0.809
F H 0.722
T H 0.831
C H 0.941
N H 0.972
F H 0.988
T H 0.995
N H 0.996
H H 0.997
M H 0.997
Y H 0.998
A H 0.995
L H 0.993
A H 0.993
A H 0.992
E H 0.989
L H 0.989
L H 0.990
K H 0.975
K H 0.820
Y T 0.799
N T 0.889
L C 0.792
P C 0.921
F H 0.485
D H 0.647
V H 0.730
M H 0.909
L H 0.953
P H 0.975
L H 0.980
I H 0.983
D H 0.973
E H 0.959
T H 0.946
A H 0.915
R H 0.818
K H 0.658
V H 0.660
H H 0.767
E H 0.606
L H 0.451
E C 0.394
P C 0.501
K C 0.308
T C 0.304
A C 0.259
Q S 0.227
T C 0.347
G C 0.469
P C 0.474
A H 0.291
I H 0.357
R H 0.333
Y T 0.401
D C 0.523
E H 0.944
N H 0.971
V H 0.983
I H 0.996
G H 0.998
N H 0.996
H H 0.994
L H 0.994
R H 0.977
M H 0.934
L H 0.881
A H 0.738
D H 0.607
D H 0.462
P C 0.392
A H 0.591
M H 0.743
Q H 0.846
R H 0.921
L H 0.935
Y H 0.944
E H 0.923
L H 0.923
L H 0.865
S H 0.757
R H 0.640
S H 0.535
I H 0.513
H H 0.351
E T 0.317
R C 0.569
Q C 0.997
END