T0393.best_hits

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
2i76A	276	2.5587e-23
1yqgA	263	1.7090e-16
2ahrA	259	3.7737e-16		c.2.1.6
				a.100.1.10
1vpdA	299	1.4291e-14		a.100.1.1
				c.2.1.6
2f1kA	279	2.7165e-14		c.2.1.6
				a.100.1.12
2rcyA	262	3.7156e-13
2izzA	322	5.2622e-13
2graA	277	5.9088e-13
2cvzA	289	1.2127e-12		a.100.1.1
				c.2.1.6
1yb4A	295	2.9751e-12
2i9pA	319	6.6596e-12
2gf2A	296	8.4545e-12
1gpjA	404	6.9418e-11		c.2.1.7
				d.58.39.1
				a.151.1.1
3c24A	286	7.2276e-11
3cumA	302	7.3581e-11
2uyyA	316	9.7394e-11
1pgjA	478	3.4980e-10	2pgd	a.100.1.1
				c.2.1.6
2h78A	297	3.8033e-10
2gerA	321	6.7166e-10
2p4qA	497	9.0635e-10
2pgdA	482	2.7794e-09		a.100.1.1
				c.2.1.6
1bg6A	359	8.8557e-09		a.100.1.5
				c.2.1.6
2iz1A	474	9.7543e-09
2iypA	473	1.0154e-08
2iyoA	472	1.0632e-08
2hk9A	275	1.1172e-08
1x0vA	354	1.2595e-08
2g5cA	281	2.0071e-08		c.2.1.6
				a.100.1.12
2eggA	297	2.0737e-08
1z82A	335	2.2225e-08
1np3A	338	6.8531e-08		a.100.1.2
				c.2.1.6
1evyA	366	9.3631e-08	1evyA	c.2.1.6
				a.100.1.6
1bg6	350	2.3262e-07	1bg6
1jayA	212	2.7464e-07		c.2.1.6
2pgd	474	4.0699e-07	2pgd
1i36A	264	5.2533e-07		c.2.1.6
				a.100.1.8
1txgA	335	7.0242e-07		a.100.1.6
				c.2.1.6
2hk8A	269	7.6141e-07
1nytA	271	8.4592e-07		c.2.1.7
				c.58.1.5
2pv7A	298	9.3158e-07
2b0jA	358	1.7354e-06		c.2.1.6
				a.100.1.11
2ew2A	316	2.5256e-06
2d5cA	263	3.1648e-06
1nvtA	287	5.2618e-06		c.2.1.7
				c.58.1.5
1zejA	293	7.6519e-06
1mv8A	436	9.3208e-06		c.26.3.1
				a.100.1.4
				c.2.1.6
1wpqA	349	1.6185e-05
2nloA	302	3.6460e-05
2o7sA	523	4.5169e-05
1f0yA	302	4.6740e-05	2hdhA	a.100.1.3
				c.2.1.6
1p77A	272	5.4568e-05		c.2.1.7
				c.58.1.5
2dbqA	334	8.0538e-05
1zcjA	463	1.1310e-04
1ks9A	291	1.3484e-04		a.100.1.7
				c.2.1.6
1j4aA	333	1.5578e-04		c.23.12.1
				c.2.1.4
2gptA	523	1.8658e-04
1zh8A	340	1.8879e-04		c.2.1.3
				d.81.1.5
1yrlA	491	2.1478e-04
2hdhA	293	2.2854e-04	2hdhA	a.100.1.3
				c.2.1.6
1npyA	271	2.2922e-04		c.58.1.5
				c.2.1.7
2ho3A	325	2.4109e-04
1pjcA	361	2.4577e-04	1sayA	c.23.12.2
				c.2.1.4
1ff9A	450	2.8154e-04	1ff9A	d.81.1.2
				c.2.1.3
2plaA	349	3.5889e-04
1wwkA	307	3.9112e-04
1sayA	361	4.6290e-04	1sayA	c.2.1.4
				c.23.12.2
2pi1A	334	5.0688e-04
2gcgA	330	5.1526e-04
2d0iA	333	5.2735e-04
1dljA	402	5.9461e-04	1dliA	c.26.3.1
				c.2.1.6

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
				a.100.1.4
2dldA	337	7.0014e-04	1dxy	c.23.12.1
				c.2.1.4
2dpoA	319	7.9656e-04
2vhxA	377	7.9901e-04
2vojA	371	8.1369e-04
1b3rA	431	8.5573e-04	1b3rA	c.2.1.4
				c.23.12.3
2axqA	467	8.7309e-04
2o4uX	334	9.6477e-04
2cukA	311	1.0208e-03
1lssA	140	1.0571e-03		c.2.1.9
2eklA	313	1.0990e-03
1xdwA	331	1.1303e-03
1li4A	432	1.2275e-03		c.2.1.4
				c.23.12.3
1npdA	288	1.3619e-03		c.58.1.5
				c.2.1.7
1yj8A	375	1.6694e-03
1tltA	319	1.7432e-03		d.81.1.5
				c.2.1.3
2q4eA	362	1.7465e-03
1dxyA	333	1.8512e-03		c.2.1.4
				c.23.12.1
1a7aA	432	2.2938e-03	1b3rA	c.23.12.3
				c.2.1.4
1ygyA	529	2.3241e-03		d.81.2.2
				c.23.12.1
				c.2.1.4
				d.58.18.1
2cdcA	366	2.6156e-03
2vhvA	377	2.6901e-03
1d4fA	431	2.7216e-03	1b3rA	c.2.1.4
				c.23.12.3
2nvwA	479	3.0259e-03		d.81.1.5
				c.2.1.3
2j6iA	364	3.0569e-03
2q50A	328	3.0911e-03
2fssA	365	3.2603e-03
1lsuA	147	3.4666e-03		c.2.1.9
2o4cA	380	3.4777e-03
1dliA	402	3.6607e-03	1dliA	c.2.1.6
				a.100.1.4
				c.26.3.1
1mx3A	347	4.3124e-03		c.23.12.1
				c.2.1.4
2hmvA	144	4.5526e-03		c.2.1.9
1x7dA	350	4.8515e-03		c.2.1.13
2g76A	335	6.4893e-03
1uufA	369	6.8659e-03		c.2.1.1
				b.35.1.2
1qmgA	524	8.3202e-03	1qmgA	a.100.1.2
				c.2.1.6
1dxy	331	1.1654e-02	1dxy
2cf5A	357	1.2288e-02
2qytA	317	1.2496e-02
1qp8A	303	1.2947e-02	1qp8A	c.23.12.1
				c.2.1.4
2nadA	393	1.3935e-02	2nadA	c.23.12.1
				c.2.1.4
1hyhA	309	1.4504e-02	1hyhA	d.162.1.1
				c.2.1.5
2nacA	393	1.4876e-02	2nadA	c.23.12.1
				c.2.1.4
1a5zA	319	1.5986e-02		c.2.1.5
				d.162.1.1
2dc1A	236	2.3318e-02
2o3jA	481	2.3564e-02
1psdA	409	2.5414e-02	1psdA	c.2.1.4
				d.58.18.1
				c.23.12.1
1gdhA	320	2.8159e-02	1gdhA	c.23.12.1
				c.2.1.4
1xwfA	431	3.4470e-02		c.23.12.3
				c.2.1.4
1ldnA	316	3.8829e-02	1hyhA	d.162.1.1
				c.2.1.5
1ur5A	309	4.3942e-02		d.162.1.1
				c.2.1.5
1lldA	319	4.5998e-02	3ldh	d.162.1.1
				c.2.1.5
1uxjA	309	5.0371e-02		d.162.1.1
				c.2.1.5
2dvmA	439	7.0901e-02
1sc6A	404	8.6046e-02		c.23.12.1
				d.58.18.1
				c.2.1.4
1ceqA	316	8.9210e-02	1ceqA	d.162.1.1
				c.2.1.5
1t2dA	322	9.1380e-02		c.2.1.5
				d.162.1.1
1ez4A	318	1.0148e-01		c.2.1.5
				d.162.1.1
1guzA	310	1.4139e-01		c.2.1.5
				d.162.1.1
1y81A	138	1.5713e-01		c.2.1.8
1qo0D	196	1.9644e-01	1qo0D	c.23.1.3
2v7pA	310	2.3172e-01
1v8bA	479	2.8116e-01		c.23.12.3
				c.2.1.4

Sequence_ID	Length	Evalue	FSSP-rep	SCOP_domain
2ewdA	317	3.0102e-01

Please cite the following papers:

Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R. ``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction'' Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003
Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus. ``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.'' Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003.