# TARGET T0393 # Using neural net dunbrack-40pc-3157-t04-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0393.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 24.6639 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 Y 0.010 0.565 0.188 0.014 0.189 0.017 0.004 0.001 0.011 0.001 0.001 2 D 0.010 0.321 0.448 0.007 0.034 0.134 0.009 0.001 0.033 0.001 0.002 3 A 0.102 0.283 0.454 0.027 0.037 0.068 0.003 0.001 0.021 0.002 0.003 4 D 0.155 0.137 0.396 0.055 0.026 0.151 0.015 0.003 0.050 0.009 0.002 5 S 0.902 0.009 0.046 0.028 0.006 0.003 0.002 0.001 0.002 0.002 0.001 6 E 0.939 0.009 0.013 0.033 0.001 0.001 0.002 0.001 0.001 0.001 0.001 7 Q 0.621 0.007 0.011 0.343 0.006 0.004 0.005 0.001 0.001 0.001 0.001 8 R 0.926 0.011 0.029 0.018 0.003 0.003 0.005 0.001 0.003 0.001 0.001 9 K 0.982 0.003 0.007 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 S 0.986 0.002 0.003 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 L 0.984 0.002 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 H 0.983 0.003 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 L 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 A 0.997 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 A 0.980 0.010 0.003 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 16 V 0.949 0.035 0.005 0.004 0.001 0.002 0.001 0.001 0.003 0.001 0.001 17 F 0.891 0.043 0.025 0.019 0.005 0.008 0.003 0.001 0.005 0.001 0.001 18 T 0.770 0.036 0.029 0.119 0.016 0.014 0.009 0.001 0.006 0.001 0.001 19 C 0.844 0.019 0.023 0.084 0.009 0.006 0.008 0.001 0.004 0.001 0.001 20 N 0.707 0.011 0.033 0.177 0.014 0.016 0.031 0.004 0.004 0.003 0.001 21 F 0.893 0.010 0.016 0.051 0.013 0.005 0.006 0.002 0.002 0.001 0.001 22 T 0.979 0.008 0.004 0.005 0.001 0.001 0.002 0.001 0.001 0.001 0.001 23 N 0.985 0.003 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 H 0.985 0.003 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 M 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 L 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 K 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 K 0.958 0.001 0.001 0.038 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 Y 0.099 0.002 0.004 0.885 0.001 0.001 0.007 0.001 0.001 0.001 0.001 37 N 0.015 0.003 0.010 0.037 0.004 0.008 0.831 0.086 0.003 0.004 0.001 38 L 0.038 0.196 0.646 0.012 0.027 0.024 0.009 0.001 0.041 0.006 0.001 39 P 0.134 0.005 0.753 0.017 0.001 0.064 0.001 0.001 0.002 0.003 0.020 40 F 0.676 0.049 0.124 0.094 0.013 0.022 0.008 0.005 0.007 0.001 0.001 41 D 0.755 0.060 0.070 0.058 0.010 0.015 0.016 0.007 0.006 0.002 0.001 42 V 0.688 0.057 0.070 0.140 0.017 0.018 0.003 0.001 0.005 0.001 0.001 43 M 0.772 0.046 0.057 0.101 0.005 0.011 0.003 0.001 0.004 0.001 0.001 44 L 0.667 0.098 0.125 0.006 0.004 0.022 0.018 0.001 0.061 0.001 0.001 45 P 0.969 0.001 0.024 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 L 0.919 0.004 0.020 0.051 0.001 0.003 0.001 0.001 0.002 0.001 0.001 47 I 0.974 0.003 0.008 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 48 D 0.984 0.002 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 E 0.987 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 T 0.953 0.002 0.006 0.034 0.001 0.002 0.001 0.001 0.001 0.001 0.001 51 A 0.995 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 R 0.992 0.002 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 K 0.915 0.002 0.002 0.073 0.002 0.001 0.003 0.001 0.001 0.001 0.001 54 V 0.926 0.005 0.025 0.039 0.001 0.003 0.001 0.001 0.001 0.001 0.001 55 H 0.831 0.026 0.031 0.092 0.002 0.006 0.009 0.001 0.003 0.001 0.001 56 E 0.673 0.042 0.058 0.168 0.012 0.016 0.023 0.003 0.005 0.002 0.001 57 L 0.418 0.047 0.092 0.408 0.008 0.011 0.006 0.003 0.006 0.001 0.001 58 E 0.045 0.100 0.406 0.008 0.030 0.027 0.029 0.002 0.346 0.007 0.001 59 P 0.789 0.001 0.183 0.011 0.001 0.003 0.001 0.001 0.001 0.001 0.010 60 K 0.849 0.035 0.049 0.052 0.003 0.004 0.003 0.002 0.002 0.001 0.001 61 T 0.578 0.077 0.078 0.210 0.016 0.015 0.014 0.003 0.008 0.001 0.001 62 A 0.606 0.140 0.120 0.062 0.031 0.008 0.012 0.006 0.013 0.003 0.001 63 Q 0.469 0.188 0.155 0.124 0.008 0.026 0.013 0.001 0.012 0.001 0.002 64 T 0.166 0.164 0.154 0.373 0.036 0.015 0.052 0.004 0.033 0.002 0.002 65 G 0.029 0.051 0.335 0.010 0.176 0.016 0.032 0.042 0.075 0.233 0.002 66 P 0.207 0.010 0.704 0.014 0.006 0.017 0.002 0.001 0.004 0.005 0.031 67 A 0.380 0.098 0.397 0.048 0.029 0.023 0.006 0.003 0.010 0.002 0.004 68 I 0.244 0.345 0.240 0.074 0.030 0.037 0.007 0.002 0.020 0.001 0.001 69 R 0.198 0.234 0.242 0.167 0.065 0.043 0.020 0.003 0.020 0.005 0.003 70 Y 0.159 0.051 0.161 0.257 0.116 0.080 0.056 0.049 0.018 0.052 0.002 71 D 0.287 0.095 0.252 0.123 0.064 0.064 0.029 0.005 0.071 0.009 0.001 72 E 0.944 0.003 0.023 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 73 N 0.937 0.009 0.012 0.028 0.003 0.002 0.006 0.002 0.001 0.001 0.001 74 V 0.948 0.029 0.010 0.006 0.002 0.004 0.001 0.001 0.002 0.001 0.001 75 I 0.992 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 G 0.988 0.003 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 N 0.966 0.002 0.001 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 H 0.965 0.001 0.003 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 L 0.991 0.001 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 R 0.991 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 M 0.962 0.002 0.005 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 L 0.766 0.010 0.029 0.181 0.001 0.004 0.003 0.001 0.005 0.001 0.001 83 A 0.826 0.009 0.040 0.077 0.004 0.005 0.030 0.003 0.002 0.002 0.001 84 D 0.329 0.020 0.052 0.549 0.011 0.016 0.012 0.005 0.004 0.002 0.001 85 D 0.175 0.058 0.427 0.033 0.015 0.032 0.019 0.001 0.234 0.005 0.001 86 P 0.960 0.001 0.031 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.002 87 A 0.942 0.005 0.012 0.035 0.001 0.002 0.002 0.001 0.001 0.001 0.001 88 M 0.938 0.001 0.005 0.054 0.001 0.001 0.001 0.001 0.001 0.001 0.001 89 Q 0.989 0.002 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 90 R 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 91 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 92 Y 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 E 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 L 0.966 0.001 0.002 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 S 0.966 0.002 0.005 0.021 0.001 0.001 0.002 0.001 0.001 0.001 0.001 97 R 0.965 0.004 0.003 0.022 0.001 0.001 0.004 0.001 0.001 0.001 0.001 98 S 0.921 0.011 0.016 0.040 0.005 0.002 0.002 0.001 0.002 0.001 0.001 99 I 0.783 0.020 0.032 0.150 0.002 0.007 0.003 0.001 0.003 0.001 0.001 100 H 0.722 0.074 0.054 0.105 0.011 0.009 0.014 0.001 0.009 0.001 0.001 101 E 0.548 0.087 0.098 0.176 0.017 0.022 0.035 0.003 0.011 0.001 0.001 102 R 0.238 0.208 0.222 0.196 0.039 0.028 0.035 0.005 0.026 0.002 0.001 103 Q 0.205 0.198 0.367 0.064 0.032 0.039 0.051 0.006 0.030 0.006 0.002 104 Y 0.010 0.565 0.188 0.014 0.189 0.017 0.004 0.001 0.011 0.001 0.001 105 D 0.010 0.321 0.448 0.007 0.034 0.134 0.009 0.001 0.033 0.001 0.002 106 A 0.102 0.283 0.454 0.027 0.037 0.068 0.003 0.001 0.021 0.002 0.003 107 D 0.155 0.137 0.396 0.055 0.026 0.151 0.015 0.003 0.050 0.009 0.002 108 S 0.902 0.009 0.046 0.028 0.006 0.003 0.002 0.001 0.002 0.002 0.001 109 E 0.939 0.009 0.013 0.033 0.001 0.001 0.002 0.001 0.001 0.001 0.001 110 Q 0.621 0.007 0.011 0.343 0.006 0.004 0.005 0.001 0.001 0.001 0.001 111 R 0.926 0.011 0.029 0.018 0.003 0.003 0.005 0.001 0.003 0.001 0.001 112 K 0.982 0.003 0.007 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 S 0.986 0.002 0.003 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 L 0.984 0.002 0.002 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 H 0.983 0.003 0.004 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 L 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 A 0.997 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 A 0.980 0.010 0.003 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 119 V 0.949 0.035 0.005 0.004 0.001 0.002 0.001 0.001 0.003 0.001 0.001 120 F 0.891 0.043 0.025 0.019 0.005 0.008 0.003 0.001 0.005 0.001 0.001 121 T 0.770 0.036 0.029 0.119 0.016 0.014 0.009 0.001 0.006 0.001 0.001 122 C 0.844 0.019 0.023 0.084 0.009 0.006 0.008 0.001 0.004 0.001 0.001 123 N 0.707 0.011 0.033 0.177 0.014 0.016 0.031 0.004 0.004 0.003 0.001 124 F 0.893 0.010 0.016 0.051 0.013 0.005 0.006 0.002 0.002 0.001 0.001 125 T 0.979 0.008 0.004 0.005 0.001 0.001 0.002 0.001 0.001 0.001 0.001 126 N 0.985 0.003 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 127 H 0.985 0.003 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 128 M 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 129 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 130 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 131 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 132 A 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 133 A 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 134 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 135 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 136 L 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 137 K 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 138 K 0.958 0.001 0.001 0.038 0.001 0.001 0.001 0.001 0.001 0.001 0.001 139 Y 0.099 0.002 0.004 0.885 0.001 0.001 0.007 0.001 0.001 0.001 0.001 140 N 0.015 0.003 0.010 0.037 0.004 0.008 0.831 0.086 0.003 0.004 0.001 141 L 0.038 0.196 0.646 0.012 0.027 0.024 0.009 0.001 0.041 0.006 0.001 142 P 0.134 0.005 0.753 0.017 0.001 0.064 0.001 0.001 0.002 0.003 0.020 143 F 0.676 0.049 0.124 0.094 0.013 0.022 0.008 0.005 0.007 0.001 0.001 144 D 0.755 0.060 0.070 0.058 0.010 0.015 0.016 0.007 0.006 0.002 0.001 145 V 0.688 0.057 0.070 0.140 0.017 0.018 0.003 0.001 0.005 0.001 0.001 146 M 0.772 0.046 0.057 0.101 0.005 0.011 0.003 0.001 0.004 0.001 0.001 147 L 0.667 0.098 0.125 0.006 0.004 0.022 0.018 0.001 0.061 0.001 0.001 148 P 0.969 0.001 0.024 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 149 L 0.919 0.004 0.020 0.051 0.001 0.003 0.001 0.001 0.002 0.001 0.001 150 I 0.974 0.003 0.008 0.011 0.001 0.002 0.001 0.001 0.001 0.001 0.001 151 D 0.984 0.002 0.005 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 152 E 0.987 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 153 T 0.953 0.002 0.006 0.034 0.001 0.002 0.001 0.001 0.001 0.001 0.001 154 A 0.995 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 155 R 0.992 0.002 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 156 K 0.915 0.002 0.002 0.073 0.002 0.001 0.003 0.001 0.001 0.001 0.001 157 V 0.926 0.005 0.025 0.039 0.001 0.003 0.001 0.001 0.001 0.001 0.001 158 H 0.831 0.026 0.031 0.092 0.002 0.006 0.009 0.001 0.003 0.001 0.001 159 E 0.673 0.042 0.058 0.168 0.012 0.016 0.023 0.003 0.005 0.002 0.001 160 L 0.418 0.047 0.092 0.408 0.008 0.011 0.006 0.003 0.006 0.001 0.001 161 E 0.045 0.100 0.406 0.008 0.030 0.027 0.029 0.002 0.346 0.007 0.001 162 P 0.789 0.001 0.183 0.011 0.001 0.003 0.001 0.001 0.001 0.001 0.010 163 K 0.849 0.035 0.049 0.052 0.003 0.004 0.003 0.002 0.002 0.001 0.001 164 T 0.578 0.077 0.078 0.210 0.016 0.015 0.014 0.003 0.008 0.001 0.001 165 A 0.606 0.140 0.120 0.062 0.031 0.008 0.012 0.006 0.013 0.003 0.001 166 Q 0.469 0.188 0.155 0.124 0.008 0.026 0.013 0.001 0.012 0.001 0.002 167 T 0.166 0.164 0.154 0.373 0.036 0.015 0.052 0.004 0.033 0.002 0.002 168 G 0.029 0.051 0.335 0.010 0.176 0.016 0.032 0.042 0.075 0.233 0.002 169 P 0.207 0.010 0.704 0.014 0.006 0.017 0.002 0.001 0.004 0.005 0.031 170 A 0.380 0.098 0.397 0.048 0.029 0.023 0.006 0.003 0.010 0.002 0.004 171 I 0.244 0.345 0.240 0.074 0.030 0.037 0.007 0.002 0.020 0.001 0.001 172 R 0.198 0.234 0.242 0.167 0.065 0.043 0.020 0.003 0.020 0.005 0.003 173 Y 0.159 0.051 0.161 0.257 0.116 0.080 0.056 0.049 0.018 0.052 0.002 174 D 0.287 0.095 0.252 0.123 0.064 0.064 0.029 0.005 0.071 0.009 0.001 175 E 0.944 0.003 0.023 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 176 N 0.937 0.009 0.012 0.028 0.003 0.002 0.006 0.002 0.001 0.001 0.001 177 V 0.948 0.029 0.010 0.006 0.002 0.004 0.001 0.001 0.002 0.001 0.001 178 I 0.992 0.003 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 179 G 0.988 0.003 0.005 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 180 N 0.966 0.002 0.001 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 181 H 0.965 0.001 0.003 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 182 L 0.991 0.001 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 183 R 0.991 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 184 M 0.962 0.002 0.005 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 185 L 0.766 0.010 0.029 0.181 0.001 0.004 0.003 0.001 0.005 0.001 0.001 186 A 0.826 0.009 0.040 0.077 0.004 0.005 0.030 0.003 0.002 0.002 0.001 187 D 0.329 0.020 0.052 0.549 0.011 0.016 0.012 0.005 0.004 0.002 0.001 188 D 0.175 0.058 0.427 0.033 0.015 0.032 0.019 0.001 0.234 0.005 0.001 189 P 0.960 0.001 0.031 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.002 190 A 0.942 0.005 0.012 0.035 0.001 0.002 0.002 0.001 0.001 0.001 0.001 191 M 0.938 0.001 0.005 0.054 0.001 0.001 0.001 0.001 0.001 0.001 0.001 192 Q 0.989 0.002 0.003 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 193 R 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 194 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 195 Y 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 196 E 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 197 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 198 L 0.966 0.001 0.002 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 199 S 0.966 0.002 0.005 0.021 0.001 0.001 0.002 0.001 0.001 0.001 0.001 200 R 0.965 0.004 0.003 0.022 0.001 0.001 0.004 0.001 0.001 0.001 0.001 201 S 0.921 0.011 0.016 0.040 0.005 0.002 0.002 0.001 0.002 0.001 0.001 202 I 0.783 0.020 0.032 0.150 0.002 0.007 0.003 0.001 0.003 0.001 0.001 203 H 0.722 0.074 0.054 0.105 0.011 0.009 0.014 0.001 0.009 0.001 0.001 204 E 0.548 0.087 0.098 0.176 0.017 0.022 0.035 0.003 0.011 0.001 0.001 205 R 0.238 0.208 0.222 0.196 0.039 0.028 0.035 0.005 0.026 0.002 0.001 206 Q 0.205 0.198 0.367 0.064 0.032 0.039 0.051 0.006 0.030 0.006 0.002